Wall clock time and date at job start Sun Mar 29 2020 21:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.46181 * 2 1 4 4 C 1.50700 * 109.47152 * 239.99980 * 2 1 3 5 5 H 1.07998 * 119.99454 * 239.99550 * 4 2 1 6 6 C 1.37869 * 120.00010 * 59.99751 * 4 2 1 7 7 N 1.31515 * 120.00607 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99872 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.46997 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46989 * 120.00204 * 8 6 4 11 11 H 1.48493 * 109.47098 * 239.99915 * 8 6 4 12 12 N 1.46899 * 109.47201 * 119.99401 * 2 1 3 13 13 C 1.46904 * 111.00301 * 275.00575 * 12 2 1 14 14 C 1.50694 * 109.47110 * 179.97438 * 13 12 2 15 15 C 1.35352 * 126.74848 * 94.70982 * 14 13 12 16 16 N 1.35316 * 106.17299 * 180.26193 * 15 14 13 17 17 C 1.46508 * 125.86875 * 179.97438 * 16 15 14 18 18 N 1.28713 * 108.26344 * 359.97438 * 16 15 14 19 19 N 1.28626 * 110.18105 * 0.02562 * 18 16 15 20 20 H 1.08994 * 109.47122 * 299.99782 * 1 2 3 21 21 H 1.08996 * 109.47251 * 60.00345 * 1 2 3 22 22 H 1.09007 * 109.46362 * 180.02562 * 1 2 3 23 23 H 0.96997 * 120.00519 * 179.97438 * 7 6 4 24 24 H 1.00899 * 110.99753 * 151.04599 * 12 2 1 25 25 H 1.08998 * 109.46728 * 59.99672 * 13 12 2 26 26 H 1.08999 * 109.46401 * 300.00015 * 13 12 2 27 27 H 1.07994 * 126.91730 * 0.26231 * 15 14 13 28 28 H 1.09005 * 109.46514 * 270.01778 * 17 16 15 29 29 H 1.09004 * 109.46872 * 30.01089 * 17 16 15 30 30 H 1.08994 * 109.46923 * 150.01499 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6534 -1.5884 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8295 -2.6035 8 14 2.3226 -1.1196 -4.0079 9 1 3.1475 -2.2864 -3.6036 10 1 1.1679 -1.5867 -4.8164 11 1 3.1473 -0.1859 -4.8160 12 7 2.0198 -0.6924 1.1995 13 6 2.0825 0.2228 2.3470 14 6 2.5873 -0.5215 3.5561 15 6 3.8675 -0.5864 3.9909 16 7 3.8504 -1.3639 5.0983 17 6 5.0132 -1.7189 5.9158 18 7 2.6372 -1.7379 5.3099 19 7 1.8594 -1.2526 4.4077 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3632 -1.0278 0.0005 23 1 0.7087 1.1611 -3.4845 24 1 2.9174 -1.1204 1.0288 25 1 1.0870 0.6164 2.5525 26 1 2.7588 1.0464 2.1182 27 1 4.7291 -0.1129 3.5441 28 1 5.4568 -2.6394 5.5361 29 1 5.7484 -0.9155 5.8701 30 1 4.6994 -1.8661 6.9492 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308133546.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:26 Heat of formation + Delta-G solvation = 99.714876 kcal Electronic energy + Delta-G solvation = -13438.158191 eV Core-core repulsion = 11077.940362 eV Total energy + Delta-G solvation = -2360.217829 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.00965 -36.11151 -34.49264 -32.78956 -30.99057 -28.49158 -27.77740 -25.39948 -24.42893 -21.83311 -20.90315 -19.72987 -17.26426 -16.45938 -16.34080 -14.98002 -14.64553 -13.95757 -13.87707 -13.73091 -13.13573 -13.07483 -12.31786 -11.86427 -11.48934 -11.15676 -10.89707 -10.75755 -10.50719 -10.23493 -10.07611 -10.03410 -9.84442 -9.00308 -8.75903 -8.45627 -7.23312 -6.00774 -4.07072 1.74398 2.45572 2.81628 3.29847 3.37884 3.42084 4.36322 4.42495 4.67370 4.79070 5.04904 5.10377 5.29751 5.31088 5.64946 5.73200 6.13344 6.32010 6.48866 6.68816 6.94745 7.21431 7.28325 7.54334 7.80414 7.93123 8.31230 8.41451 8.67801 8.75801 9.03505 9.58774 11.05570 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.054481 B = 0.006292 C = 0.005891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.814464 B = 4448.850931 C = 4751.850573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.212 3.788 3 H 0.003 0.997 4 C -0.517 4.517 5 H 0.060 0.940 6 C 0.062 3.938 7 N -0.889 5.889 8 Si 0.897 3.103 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.285 1.285 12 N -0.681 5.681 13 C 0.141 3.859 14 C 0.004 3.996 15 C -0.056 4.056 16 N -0.301 5.301 17 C 0.085 3.915 18 N -0.098 5.098 19 N -0.251 5.251 20 H 0.006 0.994 21 H 0.080 0.920 22 H 0.032 0.968 23 H 0.260 0.740 24 H 0.330 0.670 25 H 0.083 0.917 26 H 0.038 0.962 27 H 0.188 0.812 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.352 -1.109 12.730 15.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.105 3.895 3 H 0.020 0.980 4 C -0.555 4.555 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.528 5.528 8 Si 0.725 3.275 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.211 1.211 12 N -0.312 5.312 13 C 0.010 3.990 14 C -0.135 4.135 15 C -0.207 4.207 16 N -0.095 5.095 17 C -0.057 4.057 18 N -0.077 5.077 19 N -0.118 5.118 20 H 0.025 0.975 21 H 0.099 0.901 22 H 0.051 0.949 23 H 0.070 0.930 24 H 0.147 0.853 25 H 0.101 0.899 26 H 0.056 0.944 27 H 0.205 0.795 28 H 0.106 0.894 29 H 0.114 0.886 30 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 7.725 -2.059 13.690 15.853 hybrid contribution 2.021 0.640 -1.696 2.715 sum 9.747 -1.419 11.994 15.520 Atomic orbital electron populations 1.21719 0.97697 0.99543 0.99408 1.19140 0.92826 0.92294 0.85263 0.97974 1.21285 1.31385 1.12461 0.90405 0.92207 1.24911 0.95060 0.95008 0.99010 1.69908 1.36638 1.22939 1.23342 0.86469 0.78615 0.79571 0.82892 1.19818 1.20955 1.21128 1.60699 1.32109 1.32940 1.05491 1.20161 1.00443 0.92115 0.86273 1.22227 0.90009 1.01704 0.99554 1.23405 1.01287 1.03263 0.92696 1.47176 1.08778 1.33474 1.20118 1.22173 0.84540 1.02986 0.96000 1.78276 0.87194 1.20879 1.21396 1.75076 1.25428 1.09814 1.01489 0.97480 0.90113 0.94873 0.92979 0.85331 0.89919 0.94389 0.79531 0.89354 0.88602 0.88380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.22 9.19 37.16 0.34 -2.88 16 2 C 0.21 5.43 2.60 -68.86 -0.18 5.26 16 3 H 0.00 0.07 7.80 -51.93 -0.40 -0.33 16 4 C -0.52 -14.26 8.59 -34.44 -0.30 -14.56 16 5 H 0.06 1.64 7.62 -52.49 -0.40 1.24 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.46 11.32 55.43 0.63 -24.83 16 8 Si 0.90 21.30 29.54 -169.99 -5.02 16.27 16 9 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 12 N -0.68 -15.11 6.29 -109.22 -0.69 -15.79 16 13 C 0.14 2.67 6.05 -4.98 -0.03 2.64 16 14 C 0.00 0.06 6.76 -82.78 -0.56 -0.50 16 15 C -0.06 -0.75 11.55 -17.04 -0.20 -0.94 16 16 N -0.30 -3.85 3.74 -68.05 -0.25 -4.10 16 17 C 0.08 0.55 11.39 59.85 0.68 1.23 16 18 N -0.10 -1.65 13.16 60.35 0.79 -0.85 16 19 N -0.25 -4.85 12.41 33.29 0.41 -4.44 16 20 H 0.01 0.15 7.45 -51.93 -0.39 -0.24 16 21 H 0.08 2.22 6.07 -51.93 -0.32 1.91 16 22 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 23 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 24 H 0.33 7.06 8.22 -39.29 -0.32 6.74 16 25 H 0.08 1.64 7.44 -51.93 -0.39 1.25 16 26 H 0.04 0.66 8.05 -51.93 -0.42 0.24 16 27 H 0.19 1.80 8.06 -52.49 -0.42 1.38 16 28 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 260.79 15.07 3.93 3.93 Total: -1.00 -32.77 260.79 -4.41 -37.19 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -3.88 Total: 0.77 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: -0.33 Total: -8.14 kcal Atomic # 7 Polarization: -50.92 SS G_CDS: 0.89 Total: -50.02 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -32.77 -4.41 -37.19 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308133546.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.900 kcal (2) G-P(sol) polarization free energy of solvation -32.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds