Wall clock time and date at job start Sun Mar 29 2020 21:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.46181 * 2 1 4 4 C 1.50700 * 109.47152 * 239.99980 * 2 1 3 5 5 H 1.07998 * 119.99454 * 239.99550 * 4 2 1 6 6 C 1.37869 * 120.00010 * 59.99751 * 4 2 1 7 7 N 1.31515 * 120.00607 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99872 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.46997 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46989 * 120.00204 * 8 6 4 11 11 H 1.48493 * 109.47098 * 239.99915 * 8 6 4 12 12 N 1.46899 * 109.47201 * 119.99401 * 2 1 3 13 13 C 1.46904 * 111.00301 * 275.00575 * 12 2 1 14 14 C 1.50694 * 109.47110 * 179.97438 * 13 12 2 15 15 C 1.35352 * 126.74848 * 94.70982 * 14 13 12 16 16 N 1.35316 * 106.17299 * 180.26193 * 15 14 13 17 17 C 1.46508 * 125.86875 * 179.97438 * 16 15 14 18 18 N 1.28713 * 108.26344 * 359.97438 * 16 15 14 19 19 N 1.28626 * 110.18105 * 0.02562 * 18 16 15 20 20 H 1.08994 * 109.47122 * 299.99782 * 1 2 3 21 21 H 1.08996 * 109.47251 * 60.00345 * 1 2 3 22 22 H 1.09007 * 109.46362 * 180.02562 * 1 2 3 23 23 H 0.96997 * 120.00519 * 179.97438 * 7 6 4 24 24 H 1.00899 * 110.99753 * 151.04599 * 12 2 1 25 25 H 1.08998 * 109.46728 * 59.99672 * 13 12 2 26 26 H 1.08999 * 109.46401 * 300.00015 * 13 12 2 27 27 H 1.07994 * 126.91730 * 0.26231 * 15 14 13 28 28 H 1.09005 * 109.46514 * 270.01778 * 17 16 15 29 29 H 1.09004 * 109.46872 * 30.01089 * 17 16 15 30 30 H 1.08994 * 109.46923 * 150.01499 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6534 -1.5884 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8295 -2.6035 8 14 2.3226 -1.1196 -4.0079 9 1 3.1475 -2.2864 -3.6036 10 1 1.1679 -1.5867 -4.8164 11 1 3.1473 -0.1859 -4.8160 12 7 2.0198 -0.6924 1.1995 13 6 2.0825 0.2228 2.3470 14 6 2.5873 -0.5215 3.5561 15 6 3.8675 -0.5864 3.9909 16 7 3.8504 -1.3639 5.0983 17 6 5.0132 -1.7189 5.9158 18 7 2.6372 -1.7379 5.3099 19 7 1.8594 -1.2526 4.4077 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3632 -1.0278 0.0005 23 1 0.7087 1.1611 -3.4845 24 1 2.9174 -1.1204 1.0288 25 1 1.0870 0.6164 2.5525 26 1 2.7588 1.0464 2.1182 27 1 4.7291 -0.1129 3.5441 28 1 5.4568 -2.6394 5.5361 29 1 5.7484 -0.9155 5.8701 30 1 4.6994 -1.8661 6.9492 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308133546.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:26 Heat of formation + Delta-G solvation = 74.799908 kcal Electronic energy + Delta-G solvation = -13439.238585 eV Core-core repulsion = 11077.940362 eV Total energy + Delta-G solvation = -2361.298223 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -44.15214 -37.87647 -35.65738 -34.57693 -32.53309 -30.11480 -28.70402 -27.40632 -26.10100 -22.90527 -22.22671 -21.65368 -18.73551 -17.88259 -17.50253 -16.84335 -16.06986 -15.47962 -15.38908 -15.18189 -14.30930 -14.00205 -13.68106 -13.58737 -13.05878 -12.80716 -12.68528 -12.65154 -12.20269 -12.17041 -11.97588 -11.64119 -10.97021 -10.85901 -10.55974 -10.17875 -9.01667 -8.10776 -6.24739 0.67567 1.43286 1.45728 1.51059 1.57556 1.63902 2.44305 3.18050 3.40049 3.72760 3.92176 4.11886 4.25635 4.37817 4.56176 4.66210 4.72338 4.86403 5.01698 5.11703 5.19749 5.23857 5.48823 5.69277 5.74827 5.87249 6.24086 6.49300 6.78403 7.01928 7.45539 7.56416 8.95280 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.054481 B = 0.006292 C = 0.005891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.814464 B = 4448.850931 C = 4751.850573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.217 3.783 3 H -0.019 1.019 4 C -0.535 4.535 5 H 0.058 0.942 6 C 0.014 3.986 7 N -0.917 5.917 8 Si 0.964 3.036 9 H -0.268 1.268 10 H -0.283 1.283 11 H -0.278 1.278 12 N -0.686 5.686 13 C 0.149 3.851 14 C -0.029 4.029 15 C -0.029 4.029 16 N -0.287 5.287 17 C 0.070 3.930 18 N -0.122 5.122 19 N -0.300 5.300 20 H 0.020 0.980 21 H 0.060 0.940 22 H 0.022 0.978 23 H 0.263 0.737 24 H 0.334 0.666 25 H 0.065 0.935 26 H 0.056 0.944 27 H 0.231 0.769 28 H 0.106 0.894 29 H 0.132 0.868 30 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.654 -1.523 13.145 17.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.109 3.891 3 H -0.001 1.001 4 C -0.574 4.574 5 H 0.077 0.923 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.789 3.211 9 H -0.192 1.192 10 H -0.209 1.209 11 H -0.203 1.203 12 N -0.317 5.317 13 C 0.018 3.982 14 C -0.169 4.169 15 C -0.181 4.181 16 N -0.081 5.081 17 C -0.069 4.069 18 N -0.102 5.102 19 N -0.166 5.166 20 H 0.039 0.961 21 H 0.078 0.922 22 H 0.041 0.959 23 H 0.072 0.928 24 H 0.152 0.848 25 H 0.083 0.917 26 H 0.074 0.926 27 H 0.247 0.753 28 H 0.124 0.876 29 H 0.150 0.850 30 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 10.043 -2.493 14.154 17.534 hybrid contribution 1.390 0.774 -1.718 2.341 sum 11.433 -1.719 12.436 16.980 Atomic orbital electron populations 1.21574 0.98164 0.98612 0.99039 1.18928 0.92467 0.91254 0.86430 1.00114 1.21576 1.31665 1.12629 0.91509 0.92344 1.25717 0.95153 0.95671 1.01982 1.70026 1.37410 1.24093 1.24142 0.85423 0.78043 0.78580 0.79029 1.19186 1.20879 1.20321 1.60559 1.32535 1.33588 1.05060 1.20010 1.00171 0.92227 0.85823 1.22080 0.91792 1.03314 0.99708 1.23905 1.00895 1.01535 0.91815 1.47662 1.08996 1.31600 1.19886 1.22757 0.83064 1.05252 0.95794 1.78165 0.88765 1.21803 1.21435 1.74997 1.27417 1.11370 1.02817 0.96099 0.92162 0.95902 0.92799 0.84830 0.91695 0.92591 0.75287 0.87606 0.84967 0.87307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.05 9.19 71.98 0.66 -5.39 16 2 C 0.22 11.27 2.60 44.17 0.11 11.39 16 3 H -0.02 -1.03 7.80 -2.39 -0.02 -1.05 16 4 C -0.54 -29.58 8.59 25.60 0.22 -29.36 16 5 H 0.06 3.17 7.62 -2.91 -0.02 3.15 16 6 C 0.01 0.77 5.30 84.65 0.45 1.22 16 7 N -0.92 -52.86 11.32 21.44 0.24 -52.61 16 8 Si 0.96 43.40 29.54 68.60 2.03 45.42 16 9 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 10 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 11 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 12 N -0.69 -30.43 6.29 -499.45 -3.14 -33.57 16 13 C 0.15 5.58 6.05 85.55 0.52 6.09 16 14 C -0.03 -1.00 6.76 41.59 0.28 -0.72 16 15 C -0.03 -0.70 11.55 83.49 0.96 0.27 16 16 N -0.29 -6.54 3.74 -369.21 -1.38 -7.93 16 17 C 0.07 0.63 11.39 127.77 1.46 2.08 16 18 N -0.12 -3.99 13.16 37.02 0.49 -3.51 16 19 N -0.30 -11.60 12.41 -48.60 -0.60 -12.20 16 20 H 0.02 0.98 7.45 -2.39 -0.02 0.96 16 21 H 0.06 3.39 6.07 -2.39 -0.01 3.38 16 22 H 0.02 1.18 8.14 -2.38 -0.02 1.16 16 23 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 24 H 0.33 14.12 8.22 -89.69 -0.74 13.39 16 25 H 0.06 2.62 7.44 -2.39 -0.02 2.61 16 26 H 0.06 1.88 8.05 -2.39 -0.02 1.86 16 27 H 0.23 3.29 8.06 -2.91 -0.02 3.27 16 28 H 0.11 0.67 8.14 -2.38 -0.02 0.65 16 29 H 0.13 0.28 8.14 -2.38 -0.02 0.26 16 30 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -71.84 260.79 2.70 -69.15 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: 0.40 Total: 9.66 kcal Atomic # 6 Polarization: -19.08 SS G_CDS: 4.66 Total: -14.42 kcal Atomic # 7 Polarization: -105.42 SS G_CDS: -4.40 Total: -109.82 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal Total: -71.84 2.70 -69.15 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308133546.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.946 kcal (2) G-P(sol) polarization free energy of solvation -71.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds