Wall clock time and date at job start Sun Mar 29 2020 21:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47178 * 2 1 4 4 C 1.50700 * 109.46840 * 240.00251 * 2 1 3 5 5 H 1.08004 * 119.99718 * 239.99766 * 4 2 1 6 6 C 1.37871 * 120.00190 * 60.00435 * 4 2 1 7 7 N 1.31513 * 120.00046 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00347 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47517 * 89.99443 * 8 6 4 10 10 H 1.48497 * 109.47488 * 209.99942 * 8 6 4 11 11 H 1.48504 * 109.47116 * 329.99757 * 8 6 4 12 12 N 1.46898 * 109.47131 * 120.00230 * 2 1 3 13 13 C 1.46893 * 111.00071 * 274.99971 * 12 2 1 14 14 C 1.50701 * 109.47176 * 179.97438 * 13 12 2 15 15 C 1.35358 * 126.90954 * 94.98035 * 14 13 12 16 16 N 1.33767 * 106.49287 * 180.29657 * 15 14 13 17 17 N 1.28632 * 108.88855 * 359.56308 * 16 15 14 18 18 N 1.28713 * 110.17975 * 0.44871 * 17 16 15 19 19 C 1.46496 * 125.87197 * 179.70317 * 18 17 16 20 20 H 1.09005 * 109.46961 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.46951 * 299.99772 * 1 2 3 22 22 H 1.08998 * 109.47144 * 59.99735 * 1 2 3 23 23 H 0.97005 * 120.00611 * 180.02562 * 7 6 4 24 24 H 1.00905 * 111.00200 * 38.95288 * 12 2 1 25 25 H 1.09003 * 109.47504 * 59.99889 * 13 12 2 26 26 H 1.08997 * 109.47562 * 299.99926 * 13 12 2 27 27 H 1.08002 * 126.74926 * 0.02751 * 15 14 13 28 28 H 1.08996 * 109.47269 * 270.02768 * 19 18 17 29 29 H 1.09005 * 109.46889 * 30.02435 * 19 18 17 30 30 H 1.09003 * 109.47070 * 150.02098 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2392 -2.4827 7 7 0.9429 0.8298 -2.6034 8 14 2.3224 -1.1193 -4.0080 9 1 1.3448 -2.1613 -4.4125 10 1 2.4873 -0.1400 -5.1120 11 1 3.6308 -1.7564 -3.7121 12 7 2.0197 -0.6925 1.1994 13 6 2.0825 0.2224 2.3468 14 6 2.5874 -0.5220 3.5559 15 6 3.8657 -0.5851 3.9966 16 7 3.8530 -1.3557 5.0899 17 7 2.6455 -1.7366 5.3168 18 7 1.8542 -1.2625 4.4191 19 6 0.4084 -1.4865 4.3444 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 0.7082 1.1611 -3.4843 24 1 1.4496 -1.4980 1.4100 25 1 1.0871 0.6162 2.5525 26 1 2.7589 1.0461 2.1183 27 1 4.7271 -0.1104 3.5504 28 1 0.2089 -2.3755 3.7461 29 1 0.0103 -1.6280 5.3493 30 1 -0.0697 -0.6227 3.8825 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308145925.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:29 Heat of formation + Delta-G solvation = 97.597029 kcal Electronic energy + Delta-G solvation = -13709.286154 eV Core-core repulsion = 11348.976489 eV Total energy + Delta-G solvation = -2360.309666 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.01342 -36.40818 -34.45081 -33.00810 -31.13455 -28.40368 -27.75929 -25.33407 -24.50083 -22.32613 -20.53943 -20.34174 -17.16716 -16.46403 -16.35058 -14.93543 -14.76408 -14.41824 -13.78471 -13.27511 -13.08057 -12.92363 -12.68640 -11.97200 -11.81477 -11.33511 -11.00697 -10.95636 -10.65294 -10.62799 -10.28369 -10.04391 -9.88278 -9.16033 -8.90214 -8.45135 -7.46693 -6.07502 -4.11169 1.78248 2.52318 2.82292 3.28126 3.35080 3.40121 4.37444 4.50502 4.69582 4.94601 5.06872 5.19188 5.24645 5.29805 5.39631 5.79769 5.89933 6.11505 6.43237 6.50876 6.66030 6.74842 6.90954 7.15398 7.58857 7.76497 8.11209 8.30923 8.44555 8.71347 8.95964 9.54826 10.99523 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.051810 B = 0.007001 C = 0.006607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.310355 B = 3998.714621 C = 4236.776011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.211 3.789 3 H 0.038 0.962 4 C -0.498 4.498 5 H 0.063 0.937 6 C 0.057 3.943 7 N -0.898 5.898 8 Si 0.898 3.102 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.273 1.273 12 N -0.675 5.675 13 C 0.129 3.871 14 C 0.003 3.997 15 C -0.041 4.041 16 N -0.276 5.276 17 N -0.101 5.101 18 N -0.293 5.293 19 C 0.080 3.920 20 H 0.028 0.972 21 H 0.004 0.996 22 H 0.092 0.908 23 H 0.261 0.739 24 H 0.324 0.676 25 H 0.033 0.967 26 H 0.097 0.903 27 H 0.189 0.811 28 H 0.092 0.908 29 H 0.098 0.902 30 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.336 -0.870 9.469 9.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.104 3.896 3 H 0.056 0.944 4 C -0.536 4.536 5 H 0.082 0.918 6 C -0.144 4.144 7 N -0.537 5.537 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.198 1.198 12 N -0.306 5.306 13 C -0.002 4.002 14 C -0.129 4.129 15 C -0.199 4.199 16 N -0.142 5.142 17 N -0.080 5.080 18 N -0.087 5.087 19 C -0.062 4.062 20 H 0.047 0.953 21 H 0.023 0.977 22 H 0.110 0.890 23 H 0.071 0.929 24 H 0.140 0.860 25 H 0.051 0.949 26 H 0.115 0.885 27 H 0.206 0.794 28 H 0.110 0.890 29 H 0.117 0.883 30 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.655 -1.541 10.440 10.682 hybrid contribution -0.997 0.300 -1.697 1.991 sum -2.652 -1.242 8.742 9.220 Atomic orbital electron populations 1.22462 1.00573 0.99275 1.00673 1.19234 0.89655 0.94624 0.86051 0.94411 1.21123 1.30481 1.12603 0.89431 0.91835 1.24936 0.95240 0.95148 0.99093 1.69865 1.37195 1.23113 1.23540 0.86486 0.79323 0.79234 0.82313 1.20821 1.21287 1.19791 1.60907 1.58364 1.08635 1.02673 1.20433 0.99117 0.94718 0.85946 1.22469 0.92548 1.00979 0.96940 1.23331 0.96942 1.03395 0.96198 1.75006 1.11137 1.12368 1.15696 1.78207 0.95872 1.20229 1.13729 1.47148 1.10058 1.33026 1.18506 1.22231 0.74048 1.04545 1.05345 0.95266 0.97682 0.88960 0.92947 0.85986 0.94926 0.88525 0.79411 0.88983 0.88289 0.88460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.74 8.94 37.16 0.33 -3.41 16 2 C 0.21 4.92 2.57 -68.86 -0.18 4.75 16 3 H 0.04 0.96 7.80 -51.93 -0.40 0.55 16 4 C -0.50 -13.20 8.84 -34.44 -0.30 -13.51 16 5 H 0.06 1.72 7.81 -52.48 -0.41 1.31 16 6 C 0.06 1.51 5.30 -17.82 -0.09 1.42 16 7 N -0.90 -24.67 11.32 55.43 0.63 -24.04 16 8 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 9 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 12 N -0.68 -13.18 6.22 -109.22 -0.68 -13.86 16 13 C 0.13 2.07 5.71 -4.98 -0.03 2.04 16 14 C 0.00 0.05 6.51 -82.08 -0.53 -0.49 16 15 C -0.04 -0.65 11.99 -17.74 -0.21 -0.87 16 16 N -0.28 -4.88 12.41 30.24 0.38 -4.50 16 17 N -0.10 -1.70 13.16 60.35 0.79 -0.90 16 18 N -0.29 -4.25 3.74 -63.79 -0.24 -4.49 16 19 C 0.08 0.78 11.21 59.84 0.67 1.45 16 20 H 0.03 0.61 8.13 -51.93 -0.42 0.19 16 21 H 0.00 0.08 7.45 -51.93 -0.39 -0.31 16 22 H 0.09 2.30 6.07 -51.93 -0.32 1.98 16 23 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 24 H 0.32 6.03 8.46 -39.29 -0.33 5.70 16 25 H 0.03 0.49 6.61 -51.93 -0.34 0.14 16 26 H 0.10 1.53 8.05 -51.93 -0.42 1.11 16 27 H 0.19 2.55 8.06 -52.49 -0.42 2.12 16 28 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.10 0.84 7.22 -51.93 -0.38 0.47 16 LS Contribution 259.06 15.07 3.90 3.90 Total: -1.00 -29.97 259.06 -4.40 -34.37 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -3.81 Total: 2.21 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: -0.35 Total: -8.61 kcal Atomic # 7 Polarization: -48.67 SS G_CDS: 0.88 Total: -47.79 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -29.97 -4.40 -34.37 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308145925.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.964 kcal (2) G-P(sol) polarization free energy of solvation -29.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds