Wall clock time and date at job start Sun Mar 29 2020 21:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47178 * 2 1 4 4 C 1.50700 * 109.46840 * 240.00251 * 2 1 3 5 5 H 1.08004 * 119.99718 * 239.99766 * 4 2 1 6 6 C 1.37871 * 120.00190 * 60.00435 * 4 2 1 7 7 N 1.31513 * 120.00046 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00347 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47517 * 89.99443 * 8 6 4 10 10 H 1.48497 * 109.47488 * 209.99942 * 8 6 4 11 11 H 1.48504 * 109.47116 * 329.99757 * 8 6 4 12 12 N 1.46898 * 109.47131 * 120.00230 * 2 1 3 13 13 C 1.46893 * 111.00071 * 274.99971 * 12 2 1 14 14 C 1.50701 * 109.47176 * 179.97438 * 13 12 2 15 15 C 1.35358 * 126.90954 * 94.98035 * 14 13 12 16 16 N 1.33767 * 106.49287 * 180.29657 * 15 14 13 17 17 N 1.28632 * 108.88855 * 359.56308 * 16 15 14 18 18 N 1.28713 * 110.17975 * 0.44871 * 17 16 15 19 19 C 1.46496 * 125.87197 * 179.70317 * 18 17 16 20 20 H 1.09005 * 109.46961 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.46951 * 299.99772 * 1 2 3 22 22 H 1.08998 * 109.47144 * 59.99735 * 1 2 3 23 23 H 0.97005 * 120.00611 * 180.02562 * 7 6 4 24 24 H 1.00905 * 111.00200 * 38.95288 * 12 2 1 25 25 H 1.09003 * 109.47504 * 59.99889 * 13 12 2 26 26 H 1.08997 * 109.47562 * 299.99926 * 13 12 2 27 27 H 1.08002 * 126.74926 * 0.02751 * 15 14 13 28 28 H 1.08996 * 109.47269 * 270.02768 * 19 18 17 29 29 H 1.09005 * 109.46889 * 30.02435 * 19 18 17 30 30 H 1.09003 * 109.47070 * 150.02098 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2392 -2.4827 7 7 0.9429 0.8298 -2.6034 8 14 2.3224 -1.1193 -4.0080 9 1 1.3448 -2.1613 -4.4125 10 1 2.4873 -0.1400 -5.1120 11 1 3.6308 -1.7564 -3.7121 12 7 2.0197 -0.6925 1.1994 13 6 2.0825 0.2224 2.3468 14 6 2.5874 -0.5220 3.5559 15 6 3.8657 -0.5851 3.9966 16 7 3.8530 -1.3557 5.0899 17 7 2.6455 -1.7366 5.3168 18 7 1.8542 -1.2625 4.4191 19 6 0.4084 -1.4865 4.3444 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 0.7082 1.1611 -3.4843 24 1 1.4496 -1.4980 1.4100 25 1 1.0871 0.6162 2.5525 26 1 2.7589 1.0461 2.1183 27 1 4.7271 -0.1104 3.5504 28 1 0.2089 -2.3755 3.7461 29 1 0.0103 -1.6280 5.3493 30 1 -0.0697 -0.6227 3.8825 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308145925.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:29 Heat of formation + Delta-G solvation = 75.892044 kcal Electronic energy + Delta-G solvation = -13710.227353 eV Core-core repulsion = 11348.976489 eV Total energy + Delta-G solvation = -2361.250865 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -44.21300 -38.01676 -35.62391 -34.72927 -32.68345 -29.93797 -28.77406 -27.23360 -25.97537 -23.52289 -22.18759 -21.68558 -18.59755 -17.97853 -17.61065 -16.77982 -16.23591 -15.68161 -15.32307 -14.60853 -14.34227 -14.16157 -13.71432 -13.55519 -13.44562 -12.91155 -12.73699 -12.67524 -12.32388 -12.15070 -11.99149 -11.81241 -11.07268 -10.99934 -10.46691 -10.17928 -9.02683 -8.09034 -6.19077 0.57923 1.43664 1.46094 1.50653 1.55621 1.57940 2.45545 3.20334 3.37939 3.65593 3.81499 3.92795 4.17868 4.24852 4.52781 4.65671 4.66305 4.78139 4.87495 4.95582 5.09421 5.24817 5.41633 5.64747 5.72227 5.83189 6.27733 6.59812 6.73183 6.94073 7.48692 7.50873 8.95913 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.051810 B = 0.007001 C = 0.006607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.310355 B = 3998.714621 C = 4236.776011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.217 3.783 3 H 0.014 0.986 4 C -0.516 4.516 5 H 0.051 0.949 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.954 3.046 9 H -0.277 1.277 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.682 5.682 13 C 0.138 3.862 14 C -0.001 4.001 15 C -0.048 4.048 16 N -0.306 5.306 17 N -0.115 5.115 18 N -0.283 5.283 19 C 0.066 3.934 20 H 0.032 0.968 21 H 0.035 0.965 22 H 0.061 0.939 23 H 0.261 0.739 24 H 0.330 0.670 25 H 0.052 0.948 26 H 0.096 0.904 27 H 0.205 0.795 28 H 0.103 0.897 29 H 0.121 0.879 30 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.942 -1.181 9.792 10.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.109 3.891 3 H 0.032 0.968 4 C -0.555 4.555 5 H 0.069 0.931 6 C -0.185 4.185 7 N -0.559 5.559 8 Si 0.780 3.220 9 H -0.203 1.203 10 H -0.210 1.210 11 H -0.199 1.199 12 N -0.313 5.313 13 C 0.007 3.993 14 C -0.135 4.135 15 C -0.206 4.206 16 N -0.171 5.171 17 N -0.095 5.095 18 N -0.078 5.078 19 C -0.074 4.074 20 H 0.051 0.949 21 H 0.054 0.946 22 H 0.080 0.920 23 H 0.070 0.930 24 H 0.147 0.853 25 H 0.070 0.930 26 H 0.115 0.885 27 H 0.222 0.778 28 H 0.122 0.878 29 H 0.139 0.861 30 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.274 -1.868 10.790 11.184 hybrid contribution -0.836 0.395 -1.749 1.979 sum -3.111 -1.473 9.041 9.674 Atomic orbital electron populations 1.22258 0.99447 0.99460 1.00628 1.18963 0.90372 0.93088 0.86639 0.96824 1.21442 1.30421 1.12461 0.91168 0.93052 1.25598 0.95503 0.95815 1.01574 1.69975 1.37930 1.24044 1.23997 0.85620 0.78723 0.78301 0.79331 1.20254 1.21022 1.19871 1.60696 1.58393 1.09279 1.02929 1.20342 1.00220 0.93995 0.84737 1.22341 0.92574 1.01511 0.97036 1.23738 0.97966 1.03041 0.95866 1.74983 1.11860 1.13486 1.16738 1.78137 0.96072 1.20727 1.14525 1.47487 1.11420 1.31563 1.17303 1.22683 0.71542 1.05791 1.07340 0.94860 0.94634 0.92005 0.92978 0.85283 0.92992 0.88538 0.77828 0.87823 0.86050 0.86905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.71 8.94 71.98 0.64 -6.07 16 2 C 0.22 9.94 2.57 44.17 0.11 10.06 16 3 H 0.01 0.70 7.80 -2.39 -0.02 0.68 16 4 C -0.52 -27.23 8.84 25.60 0.23 -27.01 16 5 H 0.05 2.77 7.81 -2.91 -0.02 2.75 16 6 C 0.01 0.72 5.30 84.65 0.45 1.17 16 7 N -0.92 -50.45 11.32 21.44 0.24 -50.21 16 8 Si 0.95 42.67 29.54 68.60 2.03 44.70 16 9 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 10 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 12 N -0.68 -25.55 6.22 -499.47 -3.11 -28.66 16 13 C 0.14 4.12 5.71 85.56 0.49 4.61 16 14 C 0.00 -0.04 6.51 41.36 0.27 0.23 16 15 C -0.05 -1.47 11.99 83.73 1.00 -0.46 16 16 N -0.31 -10.52 12.41 -58.25 -0.72 -11.24 16 17 N -0.12 -3.71 13.16 37.02 0.49 -3.23 16 18 N -0.28 -7.58 3.74 -355.72 -1.33 -8.91 16 19 C 0.07 1.09 11.21 127.77 1.43 2.53 16 20 H 0.03 1.34 8.13 -2.38 -0.02 1.32 16 21 H 0.03 1.25 7.45 -2.39 -0.02 1.23 16 22 H 0.06 3.03 6.07 -2.39 -0.01 3.02 16 23 H 0.26 13.72 8.31 -92.70 -0.77 12.95 16 24 H 0.33 11.63 8.46 -89.69 -0.76 10.87 16 25 H 0.05 1.38 6.61 -2.39 -0.02 1.36 16 26 H 0.10 2.91 8.05 -2.39 -0.02 2.89 16 27 H 0.20 5.30 8.06 -2.91 -0.02 5.27 16 28 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.12 1.48 8.14 -2.38 -0.02 1.46 16 30 H 0.11 1.54 7.22 -2.39 -0.02 1.52 16 Total: -1.00 -62.91 259.06 2.61 -60.31 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: 0.38 Total: 12.18 kcal Atomic # 6 Polarization: -19.56 SS G_CDS: 4.63 Total: -14.94 kcal Atomic # 7 Polarization: -97.81 SS G_CDS: -4.43 Total: -102.24 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -62.91 2.61 -60.31 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308145925.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.199 kcal (2) G-P(sol) polarization free energy of solvation -62.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds