Wall clock time and date at job start Sun Mar 29 2020 22:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86807 * 119.99986 * 2 1 4 4 H 1.48497 * 109.46855 * 274.98435 * 3 2 1 5 5 H 1.48503 * 109.46840 * 34.97902 * 3 2 1 6 6 H 1.48492 * 109.47220 * 154.98028 * 3 2 1 7 7 C 1.40042 * 120.00214 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00007 * 186.14983 * 7 2 1 9 9 C 1.46378 * 120.00013 * 6.15376 * 7 2 1 10 10 O 1.21679 * 119.99835 * 353.93612 * 9 7 2 11 11 N 1.34774 * 119.99979 * 173.93707 * 9 7 2 12 12 C 1.46494 * 119.99950 * 179.97438 * 11 9 7 13 13 C 1.53004 * 109.47246 * 180.02562 * 12 11 9 14 14 N 1.46504 * 109.47110 * 180.02562 * 13 12 11 15 15 N 1.28877 * 125.45077 * 90.00199 * 14 13 12 16 16 C 1.31042 * 107.91860 * 179.97438 * 15 14 13 17 17 N 1.33322 * 106.89543 * 0.02562 * 16 15 14 18 18 N 1.28787 * 125.44577 * 269.69260 * 14 13 12 19 19 H 0.96999 * 120.00205 * 0.02562 * 1 2 3 20 20 H 0.96998 * 120.00206 * 0.02562 * 11 9 7 21 21 H 1.09005 * 109.47389 * 60.00126 * 12 11 9 22 22 H 1.08994 * 109.47571 * 300.00013 * 12 11 9 23 23 H 1.09006 * 109.47132 * 300.00121 * 13 12 11 24 24 H 1.09000 * 109.46967 * 60.00227 * 13 12 11 25 25 H 1.07997 * 126.55150 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 2.3829 2.1072 -1.3948 5 1 1.4947 2.6200 0.8027 6 1 3.5869 1.4122 0.5921 7 6 2.0070 -1.2128 0.0005 8 1 3.0824 -1.2154 0.1007 9 6 1.2815 -2.4769 -0.1348 10 8 0.0647 -2.4828 -0.1367 11 7 1.9612 -3.6342 -0.2572 12 6 1.2351 -4.8994 -0.3920 13 6 2.2352 -6.0510 -0.5130 14 7 1.5090 -7.3162 -0.6485 15 7 1.1400 -7.8508 -1.7616 16 6 0.5206 -8.9718 -1.4846 17 7 0.5257 -9.0998 -0.1575 18 7 1.1422 -8.0748 0.3255 19 1 -0.4850 0.8400 -0.0004 20 1 2.9312 -3.6295 -0.2552 21 1 0.6094 -4.8659 -1.2840 22 1 0.6081 -5.0539 0.4860 23 1 2.8626 -5.8967 -1.3909 24 1 2.8605 -6.0843 0.3792 25 1 0.0878 -9.6601 -2.1954 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308160098.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:59 Heat of formation + Delta-G solvation = 89.695099 kcal Electronic energy + Delta-G solvation = -13146.535260 eV Core-core repulsion = 10584.623935 eV Total energy + Delta-G solvation = -2561.911325 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.081 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -44.29216 -37.67309 -35.61657 -33.45917 -32.89145 -32.35636 -29.44014 -26.47587 -24.15585 -23.90892 -21.98893 -19.97264 -17.96930 -17.40172 -16.73208 -15.68074 -15.32739 -14.79705 -14.48276 -13.96825 -13.74338 -12.68068 -12.64831 -12.12901 -11.99482 -11.31827 -11.26053 -10.97467 -10.94192 -10.89283 -10.58264 -10.35933 -10.25444 -8.94512 -7.79317 -7.79144 -6.30417 -4.75745 1.26235 1.92622 2.24613 3.08613 3.16010 3.19466 4.01895 4.09713 4.40697 4.46979 4.59324 4.84105 4.94451 5.06992 5.59934 5.68569 5.77283 6.05211 6.12099 6.26706 7.33982 7.69786 7.83377 8.18031 8.38924 8.91660 9.31972 10.46087 10.64068 Molecular weight = 211.08amu Principal moments of inertia in cm(-1) A = 0.096034 B = 0.005552 C = 0.005421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 291.493541 B = 5042.345973 C = 5163.384399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.087 3.913 3 Si 0.911 3.089 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.544 4.544 8 H 0.071 0.929 9 C 0.555 3.445 10 O -0.577 6.577 11 N -0.763 5.763 12 C 0.122 3.878 13 C 0.117 3.883 14 N -0.127 5.127 15 N -0.307 5.307 16 C 0.136 3.864 17 N -0.294 5.294 18 N -0.058 5.058 19 H 0.270 0.730 20 H 0.383 0.617 21 H 0.062 0.938 22 H 0.062 0.938 23 H 0.119 0.881 24 H 0.121 0.879 25 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.981 -10.386 -2.754 12.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.134 4.134 3 Si 0.736 3.264 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.580 4.580 8 H 0.089 0.911 9 C 0.359 3.641 10 O -0.459 6.459 11 N -0.422 5.422 12 C -0.005 4.005 13 C -0.003 4.003 14 N -0.041 5.041 15 N -0.157 5.157 16 C -0.167 4.167 17 N -0.165 5.165 18 N -0.052 5.052 19 H 0.081 0.919 20 H 0.215 0.785 21 H 0.080 0.920 22 H 0.080 0.920 23 H 0.137 0.863 24 H 0.139 0.861 25 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 5.069 -10.018 -2.165 11.434 hybrid contribution 0.706 0.519 -0.615 1.070 sum 5.774 -9.499 -2.780 11.459 Atomic orbital electron populations 1.70019 1.07157 1.27549 1.34657 1.25729 0.94645 1.00455 0.92549 0.86303 0.80178 0.81227 0.78740 1.19737 1.20392 1.18807 1.20837 0.94180 0.89179 1.53846 0.91097 1.18292 0.87190 0.82048 0.76529 1.90623 1.14114 1.86011 1.55136 1.46082 1.08689 1.04707 1.82689 1.21081 0.93570 0.83414 1.02481 1.22610 0.94612 0.76493 1.06594 1.50210 1.35056 1.18152 1.00662 1.74746 1.17151 1.11046 1.12778 1.27359 1.00807 0.95205 0.93310 1.75869 1.16222 1.15501 1.08861 1.79019 1.10707 0.98465 1.16993 0.91915 0.78454 0.91963 0.91959 0.86259 0.86097 0.74985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.52 11.85 55.55 0.66 -21.87 15 2 C 0.09 2.35 5.49 -17.37 -0.10 2.25 15 3 Si 0.91 19.49 29.56 -169.99 -5.03 14.47 15 4 H -0.27 -5.71 7.11 56.52 0.40 -5.31 15 5 H -0.28 -5.88 7.11 56.52 0.40 -5.47 15 6 H -0.26 -5.42 7.11 56.52 0.40 -5.02 15 7 C -0.54 -14.72 9.53 -35.63 -0.34 -15.06 15 8 H 0.07 1.73 7.85 -52.48 -0.41 1.31 15 9 C 0.55 15.18 7.74 -12.99 -0.10 15.08 15 10 O -0.58 -18.38 15.04 5.21 0.08 -18.31 15 11 N -0.76 -15.55 5.55 -61.72 -0.34 -15.89 15 12 C 0.12 2.16 6.00 -4.04 -0.02 2.14 15 13 C 0.12 1.47 6.72 -4.04 -0.03 1.44 15 14 N -0.13 -1.83 4.00 -10.67 -0.04 -1.88 15 15 N -0.31 -4.30 12.13 29.34 0.36 -3.95 15 16 C 0.14 1.66 13.26 -91.58 -1.21 0.44 15 17 N -0.29 -4.34 12.50 29.33 0.37 -3.97 15 18 N -0.06 -0.91 13.25 60.35 0.80 -0.11 15 19 H 0.27 7.19 8.29 -40.82 -0.34 6.85 15 20 H 0.38 6.36 8.45 -40.82 -0.35 6.01 15 21 H 0.06 1.23 8.14 -51.93 -0.42 0.81 15 22 H 0.06 1.23 8.14 -51.93 -0.42 0.81 15 23 H 0.12 1.23 8.14 -51.93 -0.42 0.80 15 24 H 0.12 1.23 8.14 -51.93 -0.42 0.81 15 25 H 0.23 1.64 8.06 -52.49 -0.42 1.22 15 LS Contribution 239.19 15.07 3.60 3.60 Total: -1.00 -35.42 239.19 -3.35 -38.78 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -2.01 Total: 2.83 kcal Atomic # 6 Polarization: 8.09 SS G_CDS: -1.80 Total: 6.29 kcal Atomic # 7 Polarization: -49.45 SS G_CDS: 1.80 Total: -47.66 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: 0.08 Total: -18.31 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.03 Total: 14.47 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -35.42 -3.35 -38.78 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308160098.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.472 kcal (2) G-P(sol) polarization free energy of solvation -35.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds