Wall clock time and date at job start Sun Mar 29 2020 22:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86807 * 119.99986 * 2 1 4 4 H 1.48497 * 109.46855 * 274.98435 * 3 2 1 5 5 H 1.48503 * 109.46840 * 34.97902 * 3 2 1 6 6 H 1.48492 * 109.47220 * 154.98028 * 3 2 1 7 7 C 1.40042 * 120.00214 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00007 * 186.14983 * 7 2 1 9 9 C 1.46378 * 120.00013 * 6.15376 * 7 2 1 10 10 O 1.21679 * 119.99835 * 353.93612 * 9 7 2 11 11 N 1.34774 * 119.99979 * 173.93707 * 9 7 2 12 12 C 1.46494 * 119.99950 * 179.97438 * 11 9 7 13 13 C 1.53004 * 109.47246 * 180.02562 * 12 11 9 14 14 N 1.46504 * 109.47110 * 180.02562 * 13 12 11 15 15 N 1.28877 * 125.45077 * 90.00199 * 14 13 12 16 16 C 1.31042 * 107.91860 * 179.97438 * 15 14 13 17 17 N 1.33322 * 106.89543 * 0.02562 * 16 15 14 18 18 N 1.28787 * 125.44577 * 269.69260 * 14 13 12 19 19 H 0.96999 * 120.00205 * 0.02562 * 1 2 3 20 20 H 0.96998 * 120.00206 * 0.02562 * 11 9 7 21 21 H 1.09005 * 109.47389 * 60.00126 * 12 11 9 22 22 H 1.08994 * 109.47571 * 300.00013 * 12 11 9 23 23 H 1.09006 * 109.47132 * 300.00121 * 13 12 11 24 24 H 1.09000 * 109.46967 * 60.00227 * 13 12 11 25 25 H 1.07997 * 126.55150 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 2.3829 2.1072 -1.3948 5 1 1.4947 2.6200 0.8027 6 1 3.5869 1.4122 0.5921 7 6 2.0070 -1.2128 0.0005 8 1 3.0824 -1.2154 0.1007 9 6 1.2815 -2.4769 -0.1348 10 8 0.0647 -2.4828 -0.1367 11 7 1.9612 -3.6342 -0.2572 12 6 1.2351 -4.8994 -0.3920 13 6 2.2352 -6.0510 -0.5130 14 7 1.5090 -7.3162 -0.6485 15 7 1.1400 -7.8508 -1.7616 16 6 0.5206 -8.9718 -1.4846 17 7 0.5257 -9.0998 -0.1575 18 7 1.1422 -8.0748 0.3255 19 1 -0.4850 0.8400 -0.0004 20 1 2.9312 -3.6295 -0.2552 21 1 0.6094 -4.8659 -1.2840 22 1 0.6081 -5.0539 0.4860 23 1 2.8626 -5.8967 -1.3909 24 1 2.8605 -6.0843 0.3792 25 1 0.0878 -9.6601 -2.1954 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308160098.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:59 Heat of formation + Delta-G solvation = 61.130730 kcal Electronic energy + Delta-G solvation = -13147.773904 eV Core-core repulsion = 10584.623935 eV Total energy + Delta-G solvation = -2563.149969 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.081 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -45.36379 -39.58442 -37.00764 -35.02473 -34.48252 -33.99163 -30.90585 -28.37181 -25.60326 -24.94977 -23.19080 -21.90930 -19.57489 -18.67536 -18.07395 -17.39180 -16.70409 -16.26910 -16.00020 -15.73941 -14.90769 -14.45855 -14.29995 -13.57927 -13.24803 -13.10104 -12.84178 -12.63204 -12.53818 -12.04697 -12.04134 -11.98858 -11.41909 -10.94911 -9.97211 -9.67076 -8.33146 -6.88299 0.13625 0.87427 1.24737 1.42805 1.43010 1.59849 2.24726 2.43542 3.02657 3.18215 3.46896 3.50471 3.56224 3.90557 4.06841 4.51250 4.63312 4.77854 4.83040 5.12448 5.31947 5.81430 6.04696 6.22106 6.84722 7.31381 7.46347 8.42606 8.63258 Molecular weight = 211.08amu Principal moments of inertia in cm(-1) A = 0.096034 B = 0.005552 C = 0.005421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 291.493541 B = 5042.345973 C = 5163.384399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.026 3.974 3 Si 1.001 2.999 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.244 1.244 7 C -0.568 4.568 8 H 0.097 0.903 9 C 0.537 3.463 10 O -0.634 6.634 11 N -0.745 5.745 12 C 0.129 3.871 13 C 0.129 3.871 14 N -0.131 5.131 15 N -0.323 5.323 16 C 0.148 3.852 17 N -0.313 5.313 18 N -0.079 5.079 19 H 0.275 0.725 20 H 0.406 0.594 21 H 0.038 0.962 22 H 0.036 0.964 23 H 0.150 0.850 24 H 0.150 0.850 25 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.150 -10.459 -3.256 13.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.189 4.189 3 Si 0.820 3.180 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.167 1.167 7 C -0.604 4.604 8 H 0.115 0.885 9 C 0.342 3.658 10 O -0.521 6.521 11 N -0.403 5.403 12 C 0.002 3.998 13 C 0.010 3.990 14 N -0.045 5.045 15 N -0.173 5.173 16 C -0.155 4.155 17 N -0.184 5.184 18 N -0.072 5.072 19 H 0.085 0.915 20 H 0.241 0.759 21 H 0.056 0.944 22 H 0.055 0.945 23 H 0.167 0.833 24 H 0.168 0.832 25 H 0.294 0.706 Dipole moment (debyes) X Y Z Total from point charges 7.303 -10.147 -2.667 12.783 hybrid contribution -0.011 0.428 -0.483 0.645 sum 7.293 -9.719 -3.151 12.553 Atomic orbital electron populations 1.70197 1.09730 1.29103 1.36225 1.27040 0.95485 1.05219 0.91161 0.84953 0.79007 0.74898 0.79114 1.18851 1.20156 1.16681 1.21431 0.95567 0.89648 1.53750 0.88485 1.18697 0.86745 0.84159 0.76200 1.90580 1.16590 1.87355 1.57623 1.45525 1.09724 1.04167 1.80854 1.20946 0.94446 0.84258 1.00120 1.22575 0.92869 0.74010 1.09567 1.50299 1.35226 1.18339 1.00634 1.74758 1.17892 1.11855 1.12830 1.28278 0.99146 0.94934 0.93097 1.75854 1.16653 1.15631 1.10238 1.78995 1.11426 0.99135 1.17693 0.91525 0.75856 0.94391 0.94532 0.83255 0.83214 0.70604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -49.67 11.85 21.83 0.26 -49.41 15 2 C 0.03 1.41 5.49 85.30 0.47 1.88 15 3 Si 1.00 39.35 29.56 68.60 2.03 41.38 15 4 H -0.26 -9.94 7.11 99.48 0.71 -9.24 15 5 H -0.28 -10.66 7.11 99.48 0.71 -9.95 15 6 H -0.24 -8.71 7.11 99.48 0.71 -8.00 15 7 C -0.57 -30.55 9.53 24.83 0.24 -30.31 15 8 H 0.10 4.53 7.85 -2.91 -0.02 4.51 15 9 C 0.54 29.88 7.74 86.36 0.67 30.55 15 10 O -0.63 -42.09 15.04 -4.28 -0.06 -42.15 15 11 N -0.75 -30.02 5.55 -467.42 -2.59 -32.62 15 12 C 0.13 4.61 6.00 86.38 0.52 5.13 15 13 C 0.13 2.99 6.72 86.38 0.58 3.57 15 14 N -0.13 -3.59 4.00 -187.67 -0.75 -4.34 15 15 N -0.32 -8.49 12.13 -61.09 -0.74 -9.24 15 16 C 0.15 3.28 13.26 180.68 2.40 5.68 15 17 N -0.31 -8.85 12.50 -61.11 -0.76 -9.62 15 18 N -0.08 -2.38 13.25 37.02 0.49 -1.89 15 19 H 0.27 15.03 8.29 -92.71 -0.77 14.26 15 20 H 0.41 12.65 8.45 -92.71 -0.78 11.87 15 21 H 0.04 1.54 8.14 -2.38 -0.02 1.52 15 22 H 0.04 1.49 8.14 -2.39 -0.02 1.47 15 23 H 0.15 2.60 8.14 -2.38 -0.02 2.58 15 24 H 0.15 2.62 8.14 -2.39 -0.02 2.61 15 25 H 0.28 2.98 8.06 -2.91 -0.02 2.96 15 Total: -1.00 -79.98 239.19 3.18 -76.81 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: 0.44 Total: 14.57 kcal Atomic # 6 Polarization: 11.63 SS G_CDS: 4.87 Total: 16.50 kcal Atomic # 7 Polarization: -103.01 SS G_CDS: -4.10 Total: -107.11 kcal Atomic # 8 Polarization: -42.09 SS G_CDS: -0.06 Total: -42.15 kcal Atomic # 14 Polarization: 39.35 SS G_CDS: 2.03 Total: 41.38 kcal Total: -79.98 3.18 -76.81 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308160098.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.937 kcal (2) G-P(sol) polarization free energy of solvation -79.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds