Wall clock time and date at job start Sun Mar 29 2020 21:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46506 * 109.46932 * 2 1 4 4 C 1.36939 * 120.00030 * 94.57792 * 3 2 1 5 5 H 1.07995 * 119.99923 * 37.87122 * 4 3 2 6 6 C 1.38810 * 119.99935 * 217.59645 * 4 3 2 7 7 N 1.31613 * 120.00208 * 211.97629 * 6 4 3 8 8 Si 1.86803 * 119.99852 * 31.97667 * 6 4 3 9 9 H 1.48488 * 109.47168 * 86.00113 * 8 6 4 10 10 H 1.48506 * 109.46798 * 206.00254 * 8 6 4 11 11 H 1.48503 * 109.47035 * 325.99460 * 8 6 4 12 12 C 1.46500 * 119.99902 * 274.57609 * 3 2 1 13 13 C 1.50697 * 109.47044 * 275.35283 * 12 3 2 14 14 C 1.39679 * 127.05122 * 95.00426 * 13 12 3 15 15 N 1.31373 * 105.90406 * 179.97438 * 14 13 12 16 16 N 1.28608 * 108.71586 * 359.97438 * 15 14 13 17 17 C 1.46501 * 124.61772 * 179.97438 * 16 15 14 18 18 N 1.28600 * 110.75924 * 359.74648 * 16 15 14 19 19 H 1.09002 * 109.47264 * 304.92350 * 1 2 3 20 20 H 1.08999 * 109.47438 * 64.92959 * 1 2 3 21 21 H 1.09001 * 109.47198 * 184.92839 * 1 2 3 22 22 H 1.08995 * 109.47119 * 239.99865 * 2 1 3 23 23 H 1.09002 * 109.46880 * 119.99301 * 2 1 3 24 24 H 0.97000 * 120.00771 * 180.02562 * 7 6 4 25 25 H 1.09001 * 109.46802 * 35.35200 * 12 3 2 26 26 H 1.08994 * 109.47145 * 155.34816 * 12 3 2 27 27 H 1.08008 * 127.04533 * 359.97438 * 14 13 12 28 28 H 1.08995 * 109.46972 * 90.02231 * 17 16 15 29 29 H 1.09005 * 109.46544 * 210.02224 * 17 16 15 30 30 H 1.08994 * 109.47036 * 330.01861 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3357 1.9953 1.1821 5 1 2.8152 1.4340 1.9704 6 6 2.0465 3.3405 1.3651 7 7 2.8263 4.0846 2.1203 8 14 0.5502 4.0948 0.5394 9 1 -0.6445 3.8894 1.3969 10 1 0.7742 5.5496 0.3427 11 1 0.3317 3.4451 -0.7780 12 6 2.1670 2.1056 -1.2647 13 6 3.5042 1.7775 -1.8772 14 6 3.7728 0.7991 -2.8372 15 7 5.0633 0.8708 -3.0729 16 7 5.5658 1.7998 -2.3392 17 6 6.9819 2.1751 -2.3255 18 7 4.6551 2.3576 -1.6228 19 1 -0.3634 0.5883 0.8426 20 1 -0.3634 0.4354 -0.9308 21 1 -0.3634 -1.0239 0.0883 22 1 1.8933 -0.5138 -0.8899 23 1 1.8933 -0.5137 0.8901 24 1 2.6240 5.0246 2.2485 25 1 1.3716 1.8095 -1.9486 26 1 2.1058 3.1778 -1.0787 27 1 3.0648 0.1223 -3.2923 28 1 7.1589 2.9524 -3.0687 29 1 7.2489 2.5496 -1.3372 30 1 7.5913 1.3024 -2.5602 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308189220.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:13 Heat of formation + Delta-G solvation = 137.628226 kcal Electronic energy + Delta-G solvation = -14130.349957 eV Core-core repulsion = 11771.776174 eV Total energy + Delta-G solvation = -2358.573783 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.81934 -36.28088 -33.24095 -31.89461 -31.82909 -29.75872 -27.78998 -25.36919 -23.71507 -21.69464 -20.91134 -19.69426 -17.05037 -16.44876 -16.14812 -15.05388 -14.37484 -14.31612 -13.59392 -13.31403 -12.79072 -12.68863 -12.42120 -12.10678 -11.72691 -11.43038 -11.03213 -10.64762 -10.56397 -10.05172 -10.01987 -9.92693 -9.62086 -9.40187 -8.49714 -8.40286 -6.84243 -6.00431 -3.31173 2.45284 2.90790 3.13365 3.41630 3.52312 3.55420 4.59795 4.67466 5.11327 5.24483 5.35012 5.40810 5.50288 5.64762 5.91476 5.95043 6.19897 6.31343 6.31938 6.54366 6.69319 6.82817 6.87888 6.89524 7.08328 7.33539 8.07343 8.44882 9.01412 9.05090 9.76778 10.18452 11.15408 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.029565 B = 0.012385 C = 0.010094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.827299 B = 2260.227608 C = 2773.237187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.143 3.857 3 N -0.590 5.590 4 C -0.275 4.275 5 H 0.072 0.928 6 C 0.050 3.950 7 N -0.879 5.879 8 Si 0.851 3.149 9 H -0.288 1.288 10 H -0.296 1.296 11 H -0.260 1.260 12 C 0.224 3.776 13 C 0.008 3.992 14 C -0.035 4.035 15 N -0.309 5.309 16 N -0.175 5.175 17 C 0.114 3.886 18 N -0.266 5.266 19 H 0.056 0.944 20 H 0.041 0.959 21 H 0.040 0.960 22 H 0.036 0.964 23 H 0.052 0.948 24 H 0.262 0.738 25 H 0.059 0.941 26 H 0.073 0.927 27 H 0.187 0.813 28 H 0.080 0.920 29 H 0.099 0.901 30 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.078 -4.887 -9.254 10.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.018 3.982 3 N -0.311 5.311 4 C -0.403 4.403 5 H 0.089 0.911 6 C -0.152 4.152 7 N -0.517 5.517 8 Si 0.678 3.322 9 H -0.215 1.215 10 H -0.223 1.223 11 H -0.185 1.185 12 C 0.095 3.905 13 C -0.159 4.159 14 C -0.218 4.218 15 N -0.151 5.151 16 N -0.075 5.075 17 C -0.026 4.026 18 N -0.107 5.107 19 H 0.075 0.925 20 H 0.060 0.940 21 H 0.059 0.941 22 H 0.055 0.945 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.077 0.923 26 H 0.091 0.909 27 H 0.204 0.796 28 H 0.099 0.901 29 H 0.118 0.882 30 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.512 -4.361 -9.134 10.714 hybrid contribution -1.623 0.271 -0.343 1.680 sum 1.889 -4.090 -9.477 10.493 Atomic orbital electron populations 1.22342 0.99604 0.99595 1.01433 1.20889 0.91666 0.86521 0.99154 1.44077 1.74203 1.11207 1.01625 1.18588 1.34771 0.93772 0.93144 0.91052 1.25417 0.97266 0.96295 0.96266 1.70047 1.34576 1.06243 1.40855 0.87414 0.86487 0.77738 0.80557 1.21547 1.22283 1.18482 1.19768 0.86005 0.97674 0.87030 1.24849 0.97196 0.96301 0.97531 1.24524 0.92044 1.03199 1.02075 1.73832 1.11569 1.11287 1.18427 1.47983 1.09526 1.23065 1.26974 1.21912 0.73651 1.02074 1.04992 1.74294 0.97951 1.22511 1.15978 0.92500 0.93954 0.94101 0.94515 0.92948 0.92780 0.92269 0.90852 0.79592 0.90124 0.88207 0.88824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.00 10.24 37.16 0.38 -2.62 16 2 C 0.14 2.84 6.41 -4.04 -0.03 2.82 16 3 N -0.59 -14.03 2.03 -174.61 -0.35 -14.39 16 4 C -0.27 -7.71 9.78 -15.06 -0.15 -7.86 16 5 H 0.07 2.19 8.06 -52.49 -0.42 1.77 16 6 C 0.05 1.44 5.04 -17.43 -0.09 1.35 16 7 N -0.88 -26.85 13.97 55.49 0.78 -26.07 16 8 Si 0.85 21.41 26.49 -169.99 -4.50 16.91 16 9 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 10 H -0.30 -7.58 7.11 56.52 0.40 -7.17 16 11 H -0.26 -6.05 5.49 56.52 0.31 -5.74 16 12 C 0.22 4.98 4.44 -5.20 -0.02 4.96 16 13 C 0.01 0.17 6.93 -82.25 -0.57 -0.40 16 14 C -0.04 -0.65 12.16 -17.21 -0.21 -0.86 16 15 N -0.31 -5.75 12.05 30.68 0.37 -5.38 16 16 N -0.18 -3.29 4.35 -16.64 -0.07 -3.37 16 17 C 0.11 1.45 11.57 59.85 0.69 2.14 16 18 N -0.27 -5.98 12.05 33.71 0.41 -5.57 16 19 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 20 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 21 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.04 0.65 8.11 -51.93 -0.42 0.23 16 23 H 0.05 1.06 8.00 -51.93 -0.42 0.64 16 24 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 25 H 0.06 1.14 8.09 -51.93 -0.42 0.72 16 26 H 0.07 1.79 4.45 -51.93 -0.23 1.56 16 27 H 0.19 2.68 8.06 -52.48 -0.42 2.26 16 28 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 30 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 259.13 15.07 3.91 3.91 Total: -1.00 -33.37 259.13 -3.56 -36.93 By element: Atomic # 1 Polarization: 1.60 SS G_CDS: -4.10 Total: -2.49 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: 0.01 Total: -0.48 kcal Atomic # 7 Polarization: -55.90 SS G_CDS: 1.12 Total: -54.77 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.50 Total: 16.91 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -33.37 -3.56 -36.93 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308189220.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.555 kcal (2) G-P(sol) polarization free energy of solvation -33.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds