Wall clock time and date at job start Sun Mar 29 2020 21:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46506 * 109.46932 * 2 1 4 4 C 1.36939 * 120.00030 * 94.57792 * 3 2 1 5 5 H 1.07995 * 119.99923 * 37.87122 * 4 3 2 6 6 C 1.38810 * 119.99935 * 217.59645 * 4 3 2 7 7 N 1.31613 * 120.00208 * 211.97629 * 6 4 3 8 8 Si 1.86803 * 119.99852 * 31.97667 * 6 4 3 9 9 H 1.48488 * 109.47168 * 86.00113 * 8 6 4 10 10 H 1.48506 * 109.46798 * 206.00254 * 8 6 4 11 11 H 1.48503 * 109.47035 * 325.99460 * 8 6 4 12 12 C 1.46500 * 119.99902 * 274.57609 * 3 2 1 13 13 C 1.50697 * 109.47044 * 275.35283 * 12 3 2 14 14 C 1.39679 * 127.05122 * 95.00426 * 13 12 3 15 15 N 1.31373 * 105.90406 * 179.97438 * 14 13 12 16 16 N 1.28608 * 108.71586 * 359.97438 * 15 14 13 17 17 C 1.46501 * 124.61772 * 179.97438 * 16 15 14 18 18 N 1.28600 * 110.75924 * 359.74648 * 16 15 14 19 19 H 1.09002 * 109.47264 * 304.92350 * 1 2 3 20 20 H 1.08999 * 109.47438 * 64.92959 * 1 2 3 21 21 H 1.09001 * 109.47198 * 184.92839 * 1 2 3 22 22 H 1.08995 * 109.47119 * 239.99865 * 2 1 3 23 23 H 1.09002 * 109.46880 * 119.99301 * 2 1 3 24 24 H 0.97000 * 120.00771 * 180.02562 * 7 6 4 25 25 H 1.09001 * 109.46802 * 35.35200 * 12 3 2 26 26 H 1.08994 * 109.47145 * 155.34816 * 12 3 2 27 27 H 1.08008 * 127.04533 * 359.97438 * 14 13 12 28 28 H 1.08995 * 109.46972 * 90.02231 * 17 16 15 29 29 H 1.09005 * 109.46544 * 210.02224 * 17 16 15 30 30 H 1.08994 * 109.47036 * 330.01861 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3357 1.9953 1.1821 5 1 2.8152 1.4340 1.9704 6 6 2.0465 3.3405 1.3651 7 7 2.8263 4.0846 2.1203 8 14 0.5502 4.0948 0.5394 9 1 -0.6445 3.8894 1.3969 10 1 0.7742 5.5496 0.3427 11 1 0.3317 3.4451 -0.7780 12 6 2.1670 2.1056 -1.2647 13 6 3.5042 1.7775 -1.8772 14 6 3.7728 0.7991 -2.8372 15 7 5.0633 0.8708 -3.0729 16 7 5.5658 1.7998 -2.3392 17 6 6.9819 2.1751 -2.3255 18 7 4.6551 2.3576 -1.6228 19 1 -0.3634 0.5883 0.8426 20 1 -0.3634 0.4354 -0.9308 21 1 -0.3634 -1.0239 0.0883 22 1 1.8933 -0.5138 -0.8899 23 1 1.8933 -0.5137 0.8901 24 1 2.6240 5.0246 2.2485 25 1 1.3716 1.8095 -1.9486 26 1 2.1058 3.1778 -1.0787 27 1 3.0648 0.1223 -3.2923 28 1 7.1589 2.9524 -3.0687 29 1 7.2489 2.5496 -1.3372 30 1 7.5913 1.3024 -2.5602 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308189220.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:13 Heat of formation + Delta-G solvation = 113.596479 kcal Electronic energy + Delta-G solvation = -14131.392052 eV Core-core repulsion = 11771.776174 eV Total energy + Delta-G solvation = -2359.615878 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -44.28933 -38.05795 -34.64587 -33.92637 -33.33925 -31.33917 -29.35406 -26.93596 -25.51937 -23.14805 -22.49215 -21.38704 -18.92756 -17.93873 -17.61552 -17.00268 -16.05494 -15.70500 -15.19916 -15.12995 -14.54430 -13.98802 -13.68885 -13.61566 -13.21803 -13.11632 -12.66669 -12.62429 -12.23592 -11.89305 -11.57556 -11.55884 -11.38115 -11.03605 -10.54386 -9.95329 -8.78218 -8.20267 -5.48023 0.99111 1.39799 1.47111 1.55057 1.62741 1.69906 2.50081 3.05664 3.37754 3.58360 4.06396 4.29415 4.31789 4.48067 4.51253 4.53946 4.66722 4.81321 4.89687 4.99448 5.15073 5.32799 5.34764 5.41687 5.62763 5.94973 5.98190 6.22734 7.04009 7.55188 7.69645 8.12409 9.00215 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.029565 B = 0.012385 C = 0.010094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.827299 B = 2260.227608 C = 2773.237187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.139 3.861 3 N -0.600 5.600 4 C -0.264 4.264 5 H 0.025 0.975 6 C -0.004 4.004 7 N -0.933 5.933 8 Si 0.917 3.083 9 H -0.290 1.290 10 H -0.305 1.305 11 H -0.226 1.226 12 C 0.223 3.777 13 C -0.016 4.016 14 C -0.026 4.026 15 N -0.309 5.309 16 N -0.173 5.173 17 C 0.100 3.900 18 N -0.312 5.312 19 H 0.030 0.970 20 H 0.056 0.944 21 H 0.073 0.927 22 H 0.065 0.935 23 H 0.036 0.964 24 H 0.261 0.739 25 H 0.097 0.903 26 H 0.046 0.954 27 H 0.227 0.773 28 H 0.105 0.895 29 H 0.098 0.902 30 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.103 -6.177 -11.850 13.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.014 3.986 3 N -0.323 5.323 4 C -0.394 4.394 5 H 0.043 0.957 6 C -0.203 4.203 7 N -0.575 5.575 8 Si 0.742 3.258 9 H -0.217 1.217 10 H -0.232 1.232 11 H -0.149 1.149 12 C 0.095 3.905 13 C -0.181 4.181 14 C -0.208 4.208 15 N -0.151 5.151 16 N -0.075 5.075 17 C -0.038 4.038 18 N -0.155 5.155 19 H 0.050 0.950 20 H 0.075 0.925 21 H 0.092 0.908 22 H 0.084 0.916 23 H 0.055 0.945 24 H 0.070 0.930 25 H 0.115 0.885 26 H 0.064 0.936 27 H 0.243 0.757 28 H 0.124 0.876 29 H 0.116 0.884 30 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.525 -5.690 -11.768 13.313 hybrid contribution -1.149 0.580 0.448 1.362 sum 1.376 -5.110 -11.321 12.496 Atomic orbital electron populations 1.22213 0.97347 1.01390 1.01053 1.21044 0.93385 0.84306 0.99824 1.44158 1.74900 1.12467 1.00770 1.18385 1.33386 0.93590 0.94000 0.95746 1.26004 0.99572 0.96902 0.97796 1.70164 1.36603 1.06546 1.44143 0.86358 0.81915 0.76383 0.81094 1.21741 1.23191 1.14862 1.19765 0.87853 0.96026 0.86863 1.24739 0.96631 0.97770 0.99002 1.25058 0.92414 1.02550 1.00804 1.73837 1.11826 1.11140 1.18303 1.48475 1.10647 1.22431 1.25959 1.22387 0.71305 1.04237 1.05906 1.74214 0.99364 1.24304 1.17620 0.95046 0.92489 0.90835 0.91626 0.94526 0.93017 0.88478 0.93594 0.75685 0.87650 0.88359 0.86029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.13 10.24 71.98 0.74 -4.39 16 2 C 0.14 5.19 6.41 86.38 0.55 5.74 16 3 N -0.60 -27.94 2.03 -706.35 -1.43 -29.38 16 4 C -0.26 -15.20 9.78 84.03 0.82 -14.37 16 5 H 0.02 1.61 8.06 -2.91 -0.02 1.58 16 6 C 0.00 -0.26 5.04 84.86 0.43 0.17 16 7 N -0.93 -59.32 13.97 21.65 0.30 -59.02 16 8 Si 0.92 44.71 26.49 68.60 1.82 46.52 16 9 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 10 H -0.30 -15.16 7.11 99.48 0.71 -14.46 16 11 H -0.23 -9.63 5.49 99.48 0.55 -9.09 16 12 C 0.22 9.41 4.44 85.63 0.38 9.79 16 13 C -0.02 -0.66 6.93 42.98 0.30 -0.36 16 14 C -0.03 -0.87 12.16 85.11 1.03 0.17 16 15 N -0.31 -10.62 12.05 -56.86 -0.69 -11.31 16 16 N -0.17 -6.23 4.35 -206.56 -0.90 -7.13 16 17 C 0.10 2.36 11.57 127.77 1.48 3.84 16 18 N -0.31 -13.84 12.05 -47.25 -0.57 -14.41 16 19 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 20 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 21 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 22 H 0.07 2.08 8.11 -2.39 -0.02 2.06 16 23 H 0.04 1.46 8.00 -2.39 -0.02 1.44 16 24 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 25 H 0.10 3.31 8.09 -2.39 -0.02 3.29 16 26 H 0.05 2.18 4.45 -2.39 -0.01 2.17 16 27 H 0.23 5.33 8.06 -2.91 -0.02 5.31 16 28 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.10 2.33 8.14 -2.38 -0.02 2.31 16 30 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -74.51 259.13 5.22 -69.29 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: 0.96 Total: 4.85 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: 5.73 Total: 0.58 kcal Atomic # 7 Polarization: -117.96 SS G_CDS: -3.29 Total: -121.24 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 1.82 Total: 46.52 kcal Total: -74.51 5.22 -69.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308189220.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.882 kcal (2) G-P(sol) polarization free energy of solvation -74.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds