Wall clock time and date at job start Sun Mar 29 2020 21:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31440 * 1 3 3 Si 1.86794 * 120.00246 * 2 1 4 4 H 1.48501 * 109.47503 * 240.00416 * 3 2 1 5 5 H 1.48500 * 109.47151 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47210 * 119.99987 * 3 2 1 7 7 C 1.38760 * 119.99925 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99923 * 179.97438 * 7 2 1 9 9 O 1.34918 * 120.00121 * 359.97438 * 7 2 1 10 10 C 1.34306 * 117.00247 * 179.97438 * 9 7 2 11 11 O 1.21209 * 120.00116 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00086 * 179.97438 * 10 9 7 13 13 H 1.09004 * 115.56587 * 34.31272 * 12 10 9 14 14 C 1.53000 * 117.50175 * 248.62467 * 12 10 9 15 15 C 1.52997 * 60.00347 * 252.51187 * 14 12 10 16 16 H 1.08997 * 117.50044 * 107.48590 * 15 14 12 17 17 C 1.53001 * 117.51528 * 252.52230 * 15 14 12 18 18 C 1.53782 * 113.60988 * 226.12150 * 17 15 14 19 19 C 1.53782 * 87.08091 * 220.01718 * 18 17 15 20 20 C 1.53777 * 113.61499 * 128.62804 * 17 15 14 21 21 H 0.96997 * 120.00138 * 359.97438 * 1 2 3 22 22 H 1.09002 * 117.49696 * 0.02562 * 14 12 10 23 23 H 1.09002 * 117.50343 * 145.02291 * 14 12 10 24 24 H 1.09001 * 112.85126 * 357.42507 * 17 15 14 25 25 H 1.09006 * 113.61590 * 334.56675 * 18 17 15 26 26 H 1.09005 * 113.61731 * 105.47075 * 18 17 15 27 27 H 1.08993 * 113.61435 * 270.88252 * 19 18 17 28 28 H 1.09009 * 113.61182 * 139.97898 * 19 18 17 29 29 H 1.09002 * 113.61371 * 254.52690 * 20 17 15 30 30 H 1.09004 * 113.61720 * 25.34611 * 20 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6176 0.0000 4 1 3.1022 1.6964 -1.2125 5 1 1.2835 2.7464 0.0006 6 1 3.1022 1.6963 1.2126 7 6 2.0082 -1.2017 -0.0005 8 1 3.0882 -1.2017 -0.0010 9 8 1.3336 -2.3701 -0.0005 10 6 2.0650 -3.4966 -0.0016 11 8 3.2755 -3.4332 -0.0020 12 6 1.3809 -4.8392 -0.0011 13 1 0.4430 -4.8895 -0.5543 14 6 1.5023 -5.6936 1.2623 15 6 2.2694 -6.0849 -0.0023 16 1 3.3487 -5.9332 -0.0034 17 6 1.7737 -7.3054 -0.7804 18 6 2.8972 -8.2713 -1.1922 19 6 2.1625 -8.4292 -2.5340 20 6 1.5629 -7.0361 -2.2797 21 1 -0.4850 0.8400 0.0004 22 1 2.0767 -5.2842 2.0934 23 1 0.6444 -6.3059 1.5403 24 1 0.9268 -7.7972 -0.3018 25 1 3.8728 -7.7934 -1.2822 26 1 2.9258 -9.1859 -0.5999 27 1 1.4227 -9.2295 -2.5351 28 1 2.8297 -8.4668 -3.3953 29 1 0.5142 -6.9534 -2.5653 30 1 2.1726 -6.2196 -2.6667 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308189382.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:06 Heat of formation + Delta-G solvation = -45.873043 kcal Electronic energy + Delta-G solvation = -13505.436756 eV Core-core repulsion = 11074.320259 eV Total energy + Delta-G solvation = -2431.116497 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.104 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.58761 -38.50224 -35.98434 -34.48320 -32.09161 -26.64296 -25.51923 -25.44737 -23.36149 -20.96666 -19.51018 -19.09511 -17.68502 -16.75559 -15.50137 -15.13972 -14.67594 -14.33587 -14.27295 -13.29443 -12.76484 -12.37616 -12.34372 -11.85003 -11.72195 -11.44798 -11.17174 -10.69011 -10.56514 -10.48235 -10.41270 -10.31677 -9.82576 -9.63065 -9.52301 -8.95804 -8.53868 -6.37216 -4.04912 3.12191 3.20464 3.24778 3.39761 3.91198 4.19812 4.46992 4.71662 4.79999 4.88076 5.03228 5.15748 5.32410 5.35781 5.52756 5.64299 5.74220 5.86858 5.88407 5.94971 5.98032 6.06696 6.30735 6.34734 6.50611 6.65854 6.89308 7.43020 7.99624 8.76722 9.11429 9.93135 10.81027 Molecular weight = 210.10amu Principal moments of inertia in cm(-1) A = 0.061117 B = 0.006331 C = 0.006307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.028483 B = 4421.966764 C = 4438.529302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.042 3.958 3 Si 0.944 3.056 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.270 1.270 7 C -0.383 4.383 8 H 0.094 0.906 9 O -0.211 6.211 10 C 0.426 3.574 11 O -0.558 6.558 12 C -0.138 4.138 13 H 0.122 0.878 14 C -0.154 4.154 15 C -0.116 4.116 16 H 0.116 0.884 17 C -0.080 4.080 18 C -0.133 4.133 19 C -0.144 4.144 20 C -0.136 4.136 21 H 0.270 0.730 22 H 0.096 0.904 23 H 0.100 0.900 24 H 0.090 0.910 25 H 0.082 0.918 26 H 0.064 0.936 27 H 0.076 0.924 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.243 -12.986 -1.705 13.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.162 4.162 3 Si 0.769 3.231 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.195 1.195 7 C -0.459 4.459 8 H 0.112 0.888 9 O -0.117 6.117 10 C 0.273 3.727 11 O -0.456 6.456 12 C -0.158 4.158 13 H 0.140 0.860 14 C -0.191 4.191 15 C -0.134 4.134 16 H 0.134 0.866 17 C -0.099 4.099 18 C -0.170 4.170 19 C -0.182 4.182 20 C -0.173 4.173 21 H 0.079 0.921 22 H 0.115 0.885 23 H 0.118 0.882 24 H 0.108 0.892 25 H 0.101 0.899 26 H 0.083 0.917 27 H 0.095 0.905 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.353 -12.783 -1.707 12.968 hybrid contribution 0.310 0.917 0.017 0.968 sum 1.663 -11.866 -1.691 12.101 Atomic orbital electron populations 1.69989 1.05998 1.27720 1.46594 1.25333 0.95808 0.98833 0.96248 0.85741 0.78616 0.79459 0.79319 1.19497 1.20366 1.19508 1.21186 0.92326 0.79950 1.52445 0.88822 1.83865 1.39265 1.13230 1.75390 1.22182 0.86016 0.86301 0.78212 1.90531 1.15701 1.87995 1.51393 1.21544 1.01771 0.88197 1.04241 0.86042 1.23049 1.02608 1.01830 0.91611 1.22400 0.98723 0.93105 0.99187 0.86634 1.22157 0.98390 0.94385 0.94931 1.22948 0.98175 0.99114 0.96753 1.22819 0.99888 0.97687 0.97783 1.22939 1.01313 0.97270 0.95777 0.92065 0.88503 0.88198 0.89160 0.89898 0.91721 0.90491 0.91643 0.91567 0.89646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.97 13.67 55.48 0.76 -25.21 16 2 C 0.04 1.20 5.49 -17.53 -0.10 1.11 16 3 Si 0.94 21.75 29.55 -169.99 -5.02 16.73 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.38 -11.69 9.65 30.93 0.30 -11.39 16 8 H 0.09 2.87 6.86 -52.49 -0.36 2.51 16 9 O -0.21 -6.30 9.75 -20.68 -0.20 -6.50 16 10 C 0.43 11.04 7.69 36.00 0.28 11.32 16 11 O -0.56 -15.57 15.49 -19.05 -0.30 -15.87 16 12 C -0.14 -2.69 5.82 -91.77 -0.53 -3.22 16 13 H 0.12 2.20 8.14 -51.93 -0.42 1.78 16 14 C -0.15 -2.45 9.92 -26.73 -0.27 -2.72 16 15 C -0.12 -1.85 5.06 -90.62 -0.46 -2.31 16 16 H 0.12 2.03 7.50 -51.93 -0.39 1.64 16 17 C -0.08 -1.01 3.88 -89.81 -0.35 -1.36 16 18 C -0.13 -1.46 7.63 -25.92 -0.20 -1.66 16 19 C -0.14 -1.49 8.08 -25.92 -0.21 -1.70 16 20 C -0.14 -1.69 7.45 -25.92 -0.19 -1.88 16 21 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 22 H 0.10 1.62 8.14 -51.93 -0.42 1.19 16 23 H 0.10 1.30 8.13 -51.93 -0.42 0.88 16 24 H 0.09 1.02 8.08 -51.93 -0.42 0.60 16 25 H 0.08 0.96 7.98 -51.93 -0.41 0.54 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.08 1.21 8.10 -51.93 -0.42 0.79 16 LS Contribution 264.26 15.07 3.98 3.98 Total: -1.00 -33.12 264.26 -6.60 -39.72 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -4.10 Total: 0.96 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: -1.73 Total: -13.81 kcal Atomic # 7 Polarization: -25.97 SS G_CDS: 0.76 Total: -25.21 kcal Atomic # 8 Polarization: -21.87 SS G_CDS: -0.50 Total: -22.37 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -33.12 -6.60 -39.72 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308189382.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.153 kcal (2) G-P(sol) polarization free energy of solvation -33.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds