Wall clock time and date at job start Sun Mar 29 2020 21:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31440 * 1 3 3 Si 1.86794 * 120.00246 * 2 1 4 4 H 1.48501 * 109.47503 * 240.00416 * 3 2 1 5 5 H 1.48500 * 109.47151 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47210 * 119.99987 * 3 2 1 7 7 C 1.38760 * 119.99925 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99923 * 179.97438 * 7 2 1 9 9 O 1.34918 * 120.00121 * 359.97438 * 7 2 1 10 10 C 1.34306 * 117.00247 * 179.97438 * 9 7 2 11 11 O 1.21209 * 120.00116 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00086 * 179.97438 * 10 9 7 13 13 H 1.09004 * 115.56587 * 34.31272 * 12 10 9 14 14 C 1.53000 * 117.50175 * 248.62467 * 12 10 9 15 15 C 1.52997 * 60.00347 * 252.51187 * 14 12 10 16 16 H 1.08997 * 117.50044 * 107.48590 * 15 14 12 17 17 C 1.53001 * 117.51528 * 252.52230 * 15 14 12 18 18 C 1.53782 * 113.60988 * 226.12150 * 17 15 14 19 19 C 1.53782 * 87.08091 * 220.01718 * 18 17 15 20 20 C 1.53777 * 113.61499 * 128.62804 * 17 15 14 21 21 H 0.96997 * 120.00138 * 359.97438 * 1 2 3 22 22 H 1.09002 * 117.49696 * 0.02562 * 14 12 10 23 23 H 1.09002 * 117.50343 * 145.02291 * 14 12 10 24 24 H 1.09001 * 112.85126 * 357.42507 * 17 15 14 25 25 H 1.09006 * 113.61590 * 334.56675 * 18 17 15 26 26 H 1.09005 * 113.61731 * 105.47075 * 18 17 15 27 27 H 1.08993 * 113.61435 * 270.88252 * 19 18 17 28 28 H 1.09009 * 113.61182 * 139.97898 * 19 18 17 29 29 H 1.09002 * 113.61371 * 254.52690 * 20 17 15 30 30 H 1.09004 * 113.61720 * 25.34611 * 20 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6176 0.0000 4 1 3.1022 1.6964 -1.2125 5 1 1.2835 2.7464 0.0006 6 1 3.1022 1.6963 1.2126 7 6 2.0082 -1.2017 -0.0005 8 1 3.0882 -1.2017 -0.0010 9 8 1.3336 -2.3701 -0.0005 10 6 2.0650 -3.4966 -0.0016 11 8 3.2755 -3.4332 -0.0020 12 6 1.3809 -4.8392 -0.0011 13 1 0.4430 -4.8895 -0.5543 14 6 1.5023 -5.6936 1.2623 15 6 2.2694 -6.0849 -0.0023 16 1 3.3487 -5.9332 -0.0034 17 6 1.7737 -7.3054 -0.7804 18 6 2.8972 -8.2713 -1.1922 19 6 2.1625 -8.4292 -2.5340 20 6 1.5629 -7.0361 -2.2797 21 1 -0.4850 0.8400 0.0004 22 1 2.0767 -5.2842 2.0934 23 1 0.6444 -6.3059 1.5403 24 1 0.9268 -7.7972 -0.3018 25 1 3.8728 -7.7934 -1.2822 26 1 2.9258 -9.1859 -0.5999 27 1 1.4227 -9.2295 -2.5351 28 1 2.8297 -8.4668 -3.3953 29 1 0.5142 -6.9534 -2.5653 30 1 2.1726 -6.2196 -2.6667 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308189382.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:06 Heat of formation + Delta-G solvation = -65.594226 kcal Electronic energy + Delta-G solvation = -13506.291931 eV Core-core repulsion = 11074.320259 eV Total energy + Delta-G solvation = -2431.971672 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.104 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.31042 -39.95671 -37.68170 -36.31476 -34.33275 -28.34026 -27.04614 -26.43409 -25.10227 -22.24695 -21.12888 -20.24331 -19.91336 -18.65536 -16.99744 -16.64631 -16.39863 -16.20268 -15.84211 -14.94244 -14.23462 -13.73416 -13.40592 -13.31226 -13.28048 -13.17676 -12.71032 -12.40999 -12.19758 -12.07107 -11.90339 -11.52163 -11.36710 -11.10298 -10.87579 -10.73084 -10.68905 -8.57296 -6.38275 1.24598 1.31428 1.48183 1.55349 2.07858 2.59523 2.79960 2.99244 3.60862 3.74970 3.83136 3.95973 4.06272 4.15176 4.28507 4.45653 4.62434 4.80334 4.90683 4.91680 4.93184 5.03341 5.13399 5.14431 5.16699 5.25443 5.40036 5.68567 5.79540 6.61549 6.86931 7.74612 8.63582 Molecular weight = 210.10amu Principal moments of inertia in cm(-1) A = 0.061117 B = 0.006331 C = 0.006307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.028483 B = 4421.966764 C = 4438.529302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C -0.004 4.004 3 Si 1.020 2.980 4 H -0.262 1.262 5 H -0.257 1.257 6 H -0.261 1.261 7 C -0.427 4.427 8 H 0.080 0.920 9 O -0.243 6.243 10 C 0.422 3.578 11 O -0.587 6.587 12 C -0.168 4.168 13 H 0.134 0.866 14 C -0.132 4.132 15 C -0.097 4.097 16 H 0.094 0.906 17 C -0.078 4.078 18 C -0.131 4.131 19 C -0.132 4.132 20 C -0.146 4.146 21 H 0.280 0.720 22 H 0.085 0.915 23 H 0.142 0.858 24 H 0.117 0.883 25 H 0.070 0.930 26 H 0.086 0.914 27 H 0.099 0.901 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.878 -14.134 -1.539 14.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.204 4.204 3 Si 0.838 3.162 4 H -0.186 1.186 5 H -0.180 1.180 6 H -0.185 1.185 7 C -0.503 4.503 8 H 0.097 0.903 9 O -0.151 6.151 10 C 0.270 3.730 11 O -0.486 6.486 12 C -0.187 4.187 13 H 0.152 0.848 14 C -0.169 4.169 15 C -0.115 4.115 16 H 0.112 0.888 17 C -0.096 4.096 18 C -0.168 4.168 19 C -0.169 4.169 20 C -0.184 4.184 21 H 0.089 0.911 22 H 0.104 0.896 23 H 0.160 0.840 24 H 0.135 0.865 25 H 0.088 0.912 26 H 0.104 0.896 27 H 0.117 0.883 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.981 -13.961 -1.542 14.080 hybrid contribution 0.437 1.190 -0.034 1.268 sum 1.418 -12.771 -1.576 12.946 Atomic orbital electron populations 1.70072 1.07707 1.29571 1.46615 1.26599 0.96938 1.02406 0.94476 0.84665 0.77616 0.74097 0.79806 1.18601 1.18022 1.18542 1.21418 0.92141 0.81301 1.55413 0.90260 1.83889 1.40344 1.14202 1.76628 1.23483 0.86084 0.87527 0.75861 1.90486 1.17173 1.88625 1.52326 1.21628 1.03052 0.85676 1.08368 0.84771 1.23264 1.03569 0.99846 0.90199 1.22501 0.97236 0.92375 0.99373 0.88813 1.22307 0.99909 0.93099 0.94317 1.22939 0.97071 0.99338 0.97436 1.22805 1.00000 0.96603 0.97515 1.22957 1.01474 0.98016 0.95956 0.91051 0.89610 0.84000 0.86523 0.91155 0.89552 0.88270 0.91299 0.90867 0.92363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.86 13.67 21.63 0.30 -54.56 16 2 C 0.00 -0.23 5.49 84.88 0.47 0.24 16 3 Si 1.02 44.57 29.55 68.60 2.03 46.60 16 4 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 5 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 6 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 7 C -0.43 -27.15 9.65 67.94 0.66 -26.49 16 8 H 0.08 5.10 6.86 -2.91 -0.02 5.08 16 9 O -0.24 -15.17 9.75 14.93 0.15 -15.03 16 10 C 0.42 22.77 7.69 71.23 0.55 23.31 16 11 O -0.59 -34.30 15.49 20.78 0.32 -33.98 16 12 C -0.17 -6.56 5.82 -11.54 -0.07 -6.63 16 13 H 0.13 4.84 8.14 -2.38 -0.02 4.82 16 14 C -0.13 -3.98 9.92 30.59 0.30 -3.68 16 15 C -0.10 -2.99 5.06 -10.79 -0.05 -3.04 16 16 H 0.09 3.33 7.50 -2.39 -0.02 3.32 16 17 C -0.08 -1.76 3.88 -10.27 -0.04 -1.80 16 18 C -0.13 -2.53 7.63 31.12 0.24 -2.29 16 19 C -0.13 -2.36 8.08 31.12 0.25 -2.11 16 20 C -0.15 -3.44 7.45 31.12 0.23 -3.21 16 21 H 0.28 15.36 8.31 -92.71 -0.77 14.59 16 22 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 23 H 0.14 3.12 8.13 -2.39 -0.02 3.10 16 24 H 0.12 2.10 8.08 -2.39 -0.02 2.08 16 25 H 0.07 1.54 7.98 -2.38 -0.02 1.52 16 26 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 27 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 29 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.06 1.67 8.10 -2.38 -0.02 1.65 16 Total: -1.00 -74.80 264.26 6.44 -68.36 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: 1.12 Total: 14.30 kcal Atomic # 6 Polarization: -28.23 SS G_CDS: 2.53 Total: -25.70 kcal Atomic # 7 Polarization: -54.86 SS G_CDS: 0.30 Total: -54.56 kcal Atomic # 8 Polarization: -49.47 SS G_CDS: 0.47 Total: -49.00 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -74.80 6.44 -68.36 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308189382.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.768 kcal (2) G-P(sol) polarization free energy of solvation -74.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds