Wall clock time and date at job start Sun Mar 29 2020 21:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86793 * 120.00177 * 2 1 4 4 H 1.48500 * 109.46917 * 270.00185 * 3 2 1 5 5 H 1.48508 * 109.47242 * 29.99777 * 3 2 1 6 6 H 1.48503 * 109.47404 * 149.99848 * 3 2 1 7 7 C 1.37872 * 119.99621 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99969 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00159 * 359.97438 * 7 2 1 10 10 C 1.53008 * 109.47057 * 180.02562 * 9 7 2 11 11 N 1.46494 * 109.47064 * 180.02562 * 10 9 7 12 12 N 1.40081 * 126.04084 * 269.69411 * 11 10 9 13 13 C 1.30837 * 108.20828 * 180.26238 * 12 11 10 14 14 C 1.39868 * 108.20148 * 0.02562 * 13 12 11 15 15 C 1.34954 * 126.03475 * 90.00102 * 11 10 9 16 16 N 1.48023 * 126.12750 * 359.75762 * 15 11 10 17 17 O 1.21809 * 119.99764 * 359.97438 * 16 15 11 18 18 O 1.21796 * 120.00048 * 180.02562 * 16 15 11 19 19 H 0.97001 * 119.99685 * 0.02562 * 1 2 3 20 20 H 1.08997 * 109.46627 * 60.00358 * 9 7 2 21 21 H 1.08994 * 109.47059 * 300.00328 * 9 7 2 22 22 H 1.09004 * 109.46802 * 60.00042 * 10 9 7 23 23 H 1.08997 * 109.47080 * 300.00747 * 10 9 7 24 24 H 1.08002 * 125.89887 * 179.97438 * 13 12 11 25 25 H 1.07999 * 126.04279 * 179.97438 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 7 1.5126 -4.9308 -0.0012 12 7 1.1054 -5.6479 1.1312 13 6 0.4858 -6.7282 0.7300 14 6 0.4791 -6.7341 -0.6687 15 6 1.1160 -5.6181 -1.0928 16 7 1.3389 -5.2225 -2.5017 17 8 1.9299 -4.1886 -2.7578 18 8 0.9305 -5.9302 -3.4048 19 1 -0.4850 0.8401 -0.0004 20 1 0.6240 -2.5566 -0.8903 21 1 0.6246 -2.5571 0.8896 22 1 2.8718 -3.6044 0.8895 23 1 2.8719 -3.6044 -0.8904 24 1 0.0547 -7.4851 1.3685 25 1 0.0425 -7.4947 -1.2989 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308244899.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:04 Heat of formation + Delta-G solvation = 73.178242 kcal Electronic energy + Delta-G solvation = -13643.281044 eV Core-core repulsion = 11048.360744 eV Total energy + Delta-G solvation = -2594.920300 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.074 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.29617 -41.00059 -36.51637 -34.58375 -32.57342 -31.22123 -29.34449 -26.42936 -25.15806 -22.12476 -21.52483 -20.94644 -18.43856 -18.33856 -17.52295 -16.57799 -15.55537 -15.03120 -14.44448 -14.36202 -13.89048 -13.02113 -12.44851 -11.73085 -11.54507 -11.30620 -11.09102 -10.99553 -10.90081 -10.82177 -10.22764 -10.17733 -9.74752 -9.43991 -8.79569 -8.51744 -6.16040 -4.21710 0.16231 1.07645 1.87645 2.47902 2.56579 3.26764 3.32781 3.35416 4.34227 4.39139 4.82234 5.09267 5.21101 5.49650 5.64079 5.87098 6.10893 6.25797 6.31540 6.71852 7.21379 7.38030 7.43932 7.77569 7.81535 8.10541 8.82124 9.43655 10.95563 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.040233 B = 0.008628 C = 0.007682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.771076 B = 3244.607806 C = 3643.968954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.062 3.938 3 Si 0.902 3.098 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.525 4.525 8 H 0.063 0.937 9 C 0.019 3.981 10 C 0.109 3.891 11 N -0.305 5.305 12 N -0.227 5.227 13 C 0.033 3.967 14 C -0.187 4.187 15 C 0.118 3.882 16 N 0.049 4.951 17 O -0.129 6.129 18 O -0.145 6.145 19 H 0.264 0.736 20 H 0.023 0.977 21 H 0.026 0.974 22 H 0.097 0.903 23 H 0.106 0.894 24 H 0.202 0.798 25 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.662 -11.905 -0.366 12.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.141 4.141 3 Si 0.729 3.271 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.564 4.564 8 H 0.081 0.919 9 C -0.019 4.019 10 C -0.009 4.009 11 N -0.093 5.093 12 N -0.056 5.056 13 C -0.149 4.149 14 C -0.220 4.220 15 C -0.093 4.093 16 N 0.571 4.429 17 O -0.348 6.348 18 O -0.358 6.358 19 H 0.074 0.926 20 H 0.041 0.959 21 H 0.045 0.955 22 H 0.115 0.885 23 H 0.124 0.876 24 H 0.219 0.781 25 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 1.868 -11.180 1.253 11.404 hybrid contribution 0.072 0.585 -1.026 1.183 sum 1.940 -10.594 0.227 10.773 Atomic orbital electron populations 1.69969 1.06250 1.27162 1.49492 1.24995 0.94901 0.99561 0.94601 0.86431 0.79665 0.82614 0.78363 1.20299 1.21113 1.19657 1.20892 0.93150 0.89754 1.52566 0.91917 1.19439 0.93868 0.90184 0.98393 1.23002 0.95885 0.77292 1.04737 1.49753 1.40147 1.19021 1.00337 1.77725 1.15758 1.05882 1.06187 1.23902 1.00205 0.97169 0.93590 1.21247 1.06153 0.98474 0.96097 1.21659 1.09846 0.97632 0.80133 1.42553 0.99079 1.00275 1.00984 1.94672 1.39235 1.11876 1.89003 1.94535 1.52728 1.51672 1.36901 0.92623 0.95909 0.95546 0.88470 0.87603 0.78095 0.81171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.48 13.29 55.43 0.74 -25.75 15 2 C 0.06 1.74 5.46 -17.82 -0.10 1.65 15 3 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 15 4 H -0.28 -6.45 7.11 56.52 0.40 -6.04 15 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 15 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 15 7 C -0.52 -14.36 9.11 -34.44 -0.31 -14.68 15 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 15 9 C 0.02 0.49 5.30 -27.88 -0.15 0.34 15 10 C 0.11 2.23 5.82 -4.04 -0.02 2.21 15 11 N -0.31 -5.81 3.61 -58.05 -0.21 -6.02 15 12 N -0.23 -3.89 12.58 30.62 0.39 -3.51 15 13 C 0.03 0.43 12.03 -17.37 -0.21 0.22 15 14 C -0.19 -2.58 10.49 -40.01 -0.42 -3.00 15 15 C 0.12 2.08 7.94 -144.61 -1.15 0.94 15 16 N 0.05 0.92 4.45 32.87 0.15 1.06 15 17 O -0.13 -2.64 16.79 -29.46 -0.49 -3.13 15 18 O -0.15 -2.55 19.03 -29.46 -0.56 -3.11 15 19 H 0.26 7.39 8.31 -40.82 -0.34 7.05 15 20 H 0.02 0.64 8.14 -51.93 -0.42 0.21 15 21 H 0.03 0.73 8.14 -51.93 -0.42 0.31 15 22 H 0.10 1.86 8.14 -51.93 -0.42 1.44 15 23 H 0.11 2.11 6.30 -51.93 -0.33 1.79 15 24 H 0.20 1.59 8.06 -52.49 -0.42 1.17 15 25 H 0.17 1.79 8.06 -52.49 -0.42 1.37 15 LS Contribution 239.64 15.07 3.61 3.61 Total: -1.00 -30.79 239.64 -5.75 -36.53 By element: Atomic # 1 Polarization: -1.57 SS G_CDS: -1.98 Total: -3.55 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: -2.36 Total: -12.32 kcal Atomic # 7 Polarization: -35.27 SS G_CDS: 1.06 Total: -34.21 kcal Atomic # 8 Polarization: -5.19 SS G_CDS: -1.06 Total: -6.24 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -30.79 -5.75 -36.53 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308244899.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.711 kcal (2) G-P(sol) polarization free energy of solvation -30.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds