Wall clock time and date at job start Sun Mar 29 2020 21:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86793 * 120.00177 * 2 1 4 4 H 1.48500 * 109.46917 * 270.00185 * 3 2 1 5 5 H 1.48508 * 109.47242 * 29.99777 * 3 2 1 6 6 H 1.48503 * 109.47404 * 149.99848 * 3 2 1 7 7 C 1.37872 * 119.99621 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99969 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00159 * 359.97438 * 7 2 1 10 10 C 1.53008 * 109.47057 * 180.02562 * 9 7 2 11 11 N 1.46494 * 109.47064 * 180.02562 * 10 9 7 12 12 N 1.40081 * 126.04084 * 269.69411 * 11 10 9 13 13 C 1.30837 * 108.20828 * 180.26238 * 12 11 10 14 14 C 1.39868 * 108.20148 * 0.02562 * 13 12 11 15 15 C 1.34954 * 126.03475 * 90.00102 * 11 10 9 16 16 N 1.48023 * 126.12750 * 359.75762 * 15 11 10 17 17 O 1.21809 * 119.99764 * 359.97438 * 16 15 11 18 18 O 1.21796 * 120.00048 * 180.02562 * 16 15 11 19 19 H 0.97001 * 119.99685 * 0.02562 * 1 2 3 20 20 H 1.08997 * 109.46627 * 60.00358 * 9 7 2 21 21 H 1.08994 * 109.47059 * 300.00328 * 9 7 2 22 22 H 1.09004 * 109.46802 * 60.00042 * 10 9 7 23 23 H 1.08997 * 109.47080 * 300.00747 * 10 9 7 24 24 H 1.08002 * 125.89887 * 179.97438 * 13 12 11 25 25 H 1.07999 * 126.04279 * 179.97438 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 7 1.5126 -4.9308 -0.0012 12 7 1.1054 -5.6479 1.1312 13 6 0.4858 -6.7282 0.7300 14 6 0.4791 -6.7341 -0.6687 15 6 1.1160 -5.6181 -1.0928 16 7 1.3389 -5.2225 -2.5017 17 8 1.9299 -4.1886 -2.7578 18 8 0.9305 -5.9302 -3.4048 19 1 -0.4850 0.8401 -0.0004 20 1 0.6240 -2.5566 -0.8903 21 1 0.6246 -2.5571 0.8896 22 1 2.8718 -3.6044 0.8895 23 1 2.8719 -3.6044 -0.8904 24 1 0.0547 -7.4851 1.3685 25 1 0.0425 -7.4947 -1.2989 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308244899.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:04 Heat of formation + Delta-G solvation = 53.975549 kcal Electronic energy + Delta-G solvation = -13644.113736 eV Core-core repulsion = 11048.360744 eV Total energy + Delta-G solvation = -2595.752992 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.074 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -43.66488 -42.32246 -37.96020 -36.34888 -34.42147 -32.57241 -31.06027 -27.83935 -26.98596 -23.89201 -22.81318 -22.40898 -19.87676 -19.76460 -18.96580 -18.57550 -16.94196 -16.75097 -16.08361 -15.80212 -15.12707 -14.55366 -14.34548 -13.62193 -13.08000 -12.90411 -12.69784 -12.66050 -12.48849 -12.31075 -12.03660 -11.95759 -11.51742 -11.14975 -10.67578 -10.15510 -8.31110 -6.44974 -1.23131 -0.25083 0.55425 1.18482 1.39034 1.40219 1.42289 1.53066 2.36843 3.04252 3.22703 3.59668 3.98434 4.15742 4.19983 4.45476 4.56066 4.66319 5.15488 5.20243 5.31811 5.37468 5.65179 5.98396 6.03426 6.40314 6.68529 7.25874 8.81893 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.040233 B = 0.008628 C = 0.007682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.771076 B = 3244.607806 C = 3643.968954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.003 3.997 3 Si 0.976 3.024 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.256 1.256 7 C -0.544 4.544 8 H 0.075 0.925 9 C 0.033 3.967 10 C 0.129 3.871 11 N -0.341 5.341 12 N -0.256 5.256 13 C 0.058 3.942 14 C -0.153 4.153 15 C 0.087 3.913 16 N 0.049 4.951 17 O -0.206 6.206 18 O -0.097 6.097 19 H 0.266 0.734 20 H -0.015 1.015 21 H -0.005 1.005 22 H 0.107 0.893 23 H 0.105 0.895 24 H 0.260 0.740 25 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.739 -13.744 0.064 13.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.196 4.196 3 Si 0.800 3.200 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.180 1.180 7 C -0.582 4.582 8 H 0.093 0.907 9 C -0.005 4.005 10 C 0.010 3.990 11 N -0.128 5.128 12 N -0.083 5.083 13 C -0.124 4.124 14 C -0.186 4.186 15 C -0.122 4.122 16 N 0.568 4.432 17 O -0.405 6.405 18 O -0.326 6.326 19 H 0.075 0.925 20 H 0.003 0.997 21 H 0.013 0.987 22 H 0.125 0.875 23 H 0.123 0.877 24 H 0.275 0.725 25 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 2.046 -12.885 1.712 13.158 hybrid contribution -0.141 0.820 -1.170 1.436 sum 1.905 -12.065 0.542 12.227 Atomic orbital electron populations 1.70114 1.08179 1.28250 1.50797 1.26039 0.95770 1.03803 0.93967 0.85277 0.78685 0.77443 0.78636 1.19717 1.20703 1.17996 1.21393 0.94002 0.90832 1.51942 0.90706 1.19137 0.94030 0.92457 0.94894 1.22394 0.94447 0.77052 1.05105 1.49434 1.42690 1.19400 1.01319 1.77706 1.16950 1.07407 1.06251 1.24938 0.97386 0.96250 0.93857 1.21963 1.02679 0.97011 0.96963 1.22087 1.11856 0.99105 0.79114 1.42728 0.98708 0.99979 1.01771 1.94697 1.42749 1.13542 1.89553 1.94469 1.50102 1.50469 1.37576 0.92494 0.99655 0.98708 0.87517 0.87719 0.72469 0.76960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.44 13.29 21.45 0.28 -57.16 15 2 C 0.00 0.15 5.46 84.65 0.46 0.62 15 3 Si 0.98 43.99 29.54 68.60 2.03 46.01 15 4 H -0.27 -11.94 7.11 99.48 0.71 -11.23 15 5 H -0.28 -12.41 7.11 99.48 0.71 -11.71 15 6 H -0.26 -10.81 7.11 99.48 0.71 -10.10 15 7 C -0.54 -30.69 9.11 25.60 0.23 -30.46 15 8 H 0.07 3.93 7.74 -2.91 -0.02 3.91 15 9 C 0.03 1.77 5.30 29.85 0.16 1.93 15 10 C 0.13 5.53 5.82 86.38 0.50 6.03 15 11 N -0.34 -12.99 3.61 -337.58 -1.22 -14.21 15 12 N -0.26 -8.34 12.58 -57.02 -0.72 -9.06 15 13 C 0.06 1.26 12.03 85.24 1.02 2.28 15 14 C -0.15 -3.61 10.49 21.99 0.23 -3.38 15 15 C 0.09 2.97 7.94 128.05 1.02 3.99 15 16 N 0.05 1.83 4.45 -49.91 -0.22 1.61 15 17 O -0.21 -8.87 16.79 18.87 0.32 -8.55 15 18 O -0.10 -3.24 19.03 18.89 0.36 -2.88 15 19 H 0.27 15.32 8.31 -92.71 -0.77 14.55 15 20 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 15 21 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 15 22 H 0.11 4.22 8.14 -2.38 -0.02 4.20 15 23 H 0.10 4.43 6.30 -2.39 -0.02 4.41 15 24 H 0.26 2.35 8.06 -2.91 -0.02 2.33 15 25 H 0.21 3.14 8.06 -2.91 -0.02 3.11 15 Total: -1.00 -70.66 239.64 5.66 -65.00 By element: Atomic # 1 Polarization: -3.00 SS G_CDS: 1.21 Total: -1.79 kcal Atomic # 6 Polarization: -22.61 SS G_CDS: 3.63 Total: -18.98 kcal Atomic # 7 Polarization: -76.94 SS G_CDS: -1.87 Total: -78.81 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: 0.68 Total: -11.43 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Total: -70.66 5.66 -65.00 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308244899.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.972 kcal (2) G-P(sol) polarization free energy of solvation -70.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds