Wall clock time and date at job start Sun Mar 29 2020 21:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 110.73700 * 2 1 4 4 C 1.54980 * 110.83098 * 236.56550 * 2 1 3 5 5 C 1.54285 * 103.74883 * 204.70354 * 4 2 1 6 6 C 1.51445 * 106.84765 * 23.12305 * 5 4 2 7 7 C 1.33154 * 126.33667 * 180.33461 * 6 5 4 8 8 C 1.46880 * 119.99661 * 180.02562 * 7 6 5 9 9 O 1.21570 * 119.99904 * 0.02562 * 8 7 6 10 10 O 1.34814 * 119.99769 * 180.02562 * 8 7 6 11 11 C 1.34832 * 116.99869 * 179.97438 * 10 8 7 12 12 H 1.07998 * 120.00087 * 0.02562 * 11 10 8 13 13 C 1.38826 * 119.99754 * 180.02562 * 11 10 8 14 14 N 1.31404 * 120.00195 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99712 * 180.02562 * 13 11 10 16 16 H 1.48509 * 109.47236 * 89.99960 * 15 13 11 17 17 H 1.48501 * 109.47115 * 209.99634 * 15 13 11 18 18 H 1.48504 * 109.47284 * 329.99731 * 15 13 11 19 19 C 1.51836 * 107.31939 * 0.60024 * 6 5 4 20 20 H 1.09004 * 109.47256 * 183.43970 * 1 2 3 21 21 H 1.09001 * 109.47289 * 303.43385 * 1 2 3 22 22 H 1.08997 * 109.47542 * 63.43477 * 1 2 3 23 23 H 1.09000 * 110.57384 * 86.13819 * 4 2 1 24 24 H 1.09001 * 110.57008 * 323.27060 * 4 2 1 25 25 H 1.09001 * 109.97900 * 263.77595 * 5 4 2 26 26 H 1.08996 * 110.01690 * 142.49312 * 5 4 2 27 27 H 1.07995 * 120.00113 * 359.75443 * 7 6 5 28 28 H 0.97005 * 119.99561 * 179.97438 * 14 13 11 29 29 H 1.08996 * 110.44409 * 94.70777 * 19 6 5 30 30 H 1.09007 * 110.43922 * 217.23070 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9159 1.0194 0.0000 4 6 2.0811 -0.7981 -1.2088 5 6 3.4840 -1.2428 -0.7457 6 6 3.4693 -1.2348 0.7687 7 6 4.4858 -1.5494 1.5692 8 6 4.3166 -1.4941 3.0272 9 8 3.2485 -1.1614 3.5030 10 8 5.3459 -1.8121 3.8377 11 6 5.1241 -1.7401 5.1657 12 1 4.1553 -1.4385 5.5359 13 6 6.1410 -2.0535 6.0573 14 7 7.3195 -2.4209 5.6070 15 14 5.8335 -1.9544 7.8971 16 1 5.3374 -3.2655 8.3875 17 1 7.1001 -1.6129 8.5930 18 1 4.8186 -0.9062 8.1737 19 6 2.0791 -0.8080 1.2050 20 1 -0.3634 -1.0258 0.0617 21 1 -0.3634 0.5662 0.8576 22 1 -0.3634 0.4596 -0.9191 23 1 2.1531 -0.1591 -2.0889 24 1 1.4529 -1.6649 -1.4140 25 1 4.2364 -0.5458 -1.1147 26 1 3.6964 -2.2476 -1.1109 27 1 5.4332 -1.8496 1.1465 28 1 8.0302 -2.6396 6.2300 29 1 1.4555 -1.6811 1.3970 30 1 2.1354 -0.1769 2.0920 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308278661.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:00 Heat of formation + Delta-G solvation = -85.240596 kcal Electronic energy + Delta-G solvation = -13488.733302 eV Core-core repulsion = 11055.909700 eV Total energy + Delta-G solvation = -2432.823602 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.104 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.10112 -37.97199 -35.09507 -32.34957 -32.07943 -29.65105 -26.96832 -25.40532 -23.89551 -20.75374 -19.95327 -17.86618 -17.62876 -16.41933 -15.56374 -14.66836 -14.40189 -14.29691 -13.93811 -13.51903 -13.06151 -12.45731 -12.26963 -11.94490 -11.66456 -11.45982 -11.18499 -10.94802 -10.78524 -10.48465 -10.42079 -10.36538 -10.24504 -9.75772 -8.77442 -8.62144 -8.50071 -6.38488 -4.01941 1.95227 3.18574 3.20981 3.27533 3.98910 4.14598 4.46225 4.81876 4.92375 5.00077 5.21075 5.37664 5.50025 5.59645 5.63245 5.67417 5.92534 5.95659 5.98926 6.02016 6.19407 6.24384 6.44393 6.55220 6.70792 6.90910 7.23955 7.46535 8.00356 8.80785 9.10485 9.94659 10.79886 Molecular weight = 210.10amu Principal moments of inertia in cm(-1) A = 0.063883 B = 0.006495 C = 0.005957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.196663 B = 4310.300859 C = 4699.215335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.102 4.102 3 H 0.075 0.925 4 C -0.119 4.119 5 C -0.095 4.095 6 C -0.069 4.069 7 C -0.159 4.159 8 C 0.427 3.573 9 O -0.556 6.556 10 O -0.212 6.212 11 C -0.376 4.376 12 H 0.096 0.904 13 C 0.039 3.961 14 N -0.864 5.864 15 Si 0.944 3.056 16 H -0.273 1.273 17 H -0.278 1.278 18 H -0.267 1.267 19 C -0.092 4.092 20 H 0.054 0.946 21 H 0.055 0.945 22 H 0.051 0.949 23 H 0.065 0.935 24 H 0.067 0.933 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.128 0.872 28 H 0.269 0.731 29 H 0.079 0.921 30 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.880 2.690 -10.950 13.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.121 4.121 3 H 0.094 0.906 4 C -0.156 4.156 5 C -0.132 4.132 6 C -0.070 4.070 7 C -0.178 4.178 8 C 0.277 3.723 9 O -0.455 6.455 10 O -0.119 6.119 11 C -0.452 4.452 12 H 0.113 0.887 13 C -0.165 4.165 14 N -0.501 5.501 15 Si 0.768 3.232 16 H -0.199 1.199 17 H -0.203 1.203 18 H -0.191 1.191 19 C -0.128 4.128 20 H 0.073 0.927 21 H 0.074 0.926 22 H 0.070 0.930 23 H 0.084 0.916 24 H 0.086 0.914 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.146 0.854 28 H 0.079 0.921 29 H 0.097 0.903 30 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -7.915 2.701 -10.730 13.604 hybrid contribution 0.083 -0.057 0.854 0.860 sum -7.832 2.644 -9.876 12.879 Atomic orbital electron populations 1.21733 0.95043 1.01779 1.01298 1.22244 0.95371 0.99221 0.95256 0.90641 1.22438 0.95738 0.99750 0.97682 1.21225 0.97933 1.01929 0.92084 1.22670 0.95200 0.94432 0.94694 1.21321 0.99406 1.06315 0.90744 1.21008 0.83419 0.79721 0.88147 1.90581 1.28221 1.49246 1.77494 1.83949 1.37504 1.71637 1.18793 1.21259 0.99910 1.46525 0.77501 0.88652 1.25364 0.94453 0.96196 1.00437 1.69986 1.02401 1.42100 1.35570 0.85669 0.78043 0.79039 0.80412 1.19890 1.20337 1.19094 1.21755 0.92408 1.00320 0.98339 0.92679 0.92566 0.93008 0.91641 0.91422 0.90492 0.90517 0.85396 0.92076 0.90311 0.88361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.29 37.16 0.35 -1.19 16 2 C -0.10 -1.29 3.54 -88.45 -0.31 -1.61 16 3 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 4 C -0.12 -1.31 6.32 -25.01 -0.16 -1.47 16 5 C -0.09 -1.20 6.61 -26.84 -0.18 -1.37 16 6 C -0.07 -1.18 6.15 -100.19 -0.62 -1.79 16 7 C -0.16 -3.23 10.06 -37.86 -0.38 -3.62 16 8 C 0.43 11.16 7.84 34.23 0.27 11.43 16 9 O -0.56 -15.17 13.00 -19.32 -0.25 -15.42 16 10 O -0.21 -6.35 9.75 -21.80 -0.21 -6.56 16 11 C -0.38 -11.43 9.65 30.95 0.30 -11.14 16 12 H 0.10 2.90 6.86 -52.49 -0.36 2.54 16 13 C 0.04 1.14 5.50 -17.52 -0.10 1.04 16 14 N -0.86 -25.87 13.67 55.49 0.76 -25.11 16 15 Si 0.94 21.67 29.55 -169.99 -5.02 16.64 16 16 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 17 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 18 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 19 C -0.09 -1.52 4.88 -26.20 -0.13 -1.65 16 20 H 0.05 0.58 8.08 -51.93 -0.42 0.16 16 21 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.07 0.70 8.04 -51.93 -0.42 0.28 16 25 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.13 2.35 8.06 -52.49 -0.42 1.93 16 28 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 29 H 0.08 1.32 8.01 -51.93 -0.42 0.91 16 30 H 0.10 1.93 6.25 -51.92 -0.32 1.61 16 LS Contribution 259.60 15.07 3.91 3.91 Total: -1.00 -32.77 259.60 -5.81 -38.58 By element: Atomic # 1 Polarization: 3.35 SS G_CDS: -4.03 Total: -0.68 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: -0.96 Total: -11.36 kcal Atomic # 7 Polarization: -25.87 SS G_CDS: 0.76 Total: -25.11 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: -0.46 Total: -21.98 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -32.77 -5.81 -38.58 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308278661.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.665 kcal (2) G-P(sol) polarization free energy of solvation -32.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds