Wall clock time and date at job start Sun Mar 29 2020 21:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 110.73700 * 2 1 4 4 C 1.54980 * 110.83098 * 236.56550 * 2 1 3 5 5 C 1.54285 * 103.74883 * 204.70354 * 4 2 1 6 6 C 1.51445 * 106.84765 * 23.12305 * 5 4 2 7 7 C 1.33154 * 126.33667 * 180.33461 * 6 5 4 8 8 C 1.46880 * 119.99661 * 180.02562 * 7 6 5 9 9 O 1.21570 * 119.99904 * 0.02562 * 8 7 6 10 10 O 1.34814 * 119.99769 * 180.02562 * 8 7 6 11 11 C 1.34832 * 116.99869 * 179.97438 * 10 8 7 12 12 H 1.07998 * 120.00087 * 0.02562 * 11 10 8 13 13 C 1.38826 * 119.99754 * 180.02562 * 11 10 8 14 14 N 1.31404 * 120.00195 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99712 * 180.02562 * 13 11 10 16 16 H 1.48509 * 109.47236 * 89.99960 * 15 13 11 17 17 H 1.48501 * 109.47115 * 209.99634 * 15 13 11 18 18 H 1.48504 * 109.47284 * 329.99731 * 15 13 11 19 19 C 1.51836 * 107.31939 * 0.60024 * 6 5 4 20 20 H 1.09004 * 109.47256 * 183.43970 * 1 2 3 21 21 H 1.09001 * 109.47289 * 303.43385 * 1 2 3 22 22 H 1.08997 * 109.47542 * 63.43477 * 1 2 3 23 23 H 1.09000 * 110.57384 * 86.13819 * 4 2 1 24 24 H 1.09001 * 110.57008 * 323.27060 * 4 2 1 25 25 H 1.09001 * 109.97900 * 263.77595 * 5 4 2 26 26 H 1.08996 * 110.01690 * 142.49312 * 5 4 2 27 27 H 1.07995 * 120.00113 * 359.75443 * 7 6 5 28 28 H 0.97005 * 119.99561 * 179.97438 * 14 13 11 29 29 H 1.08996 * 110.44409 * 94.70777 * 19 6 5 30 30 H 1.09007 * 110.43922 * 217.23070 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9159 1.0194 0.0000 4 6 2.0811 -0.7981 -1.2088 5 6 3.4840 -1.2428 -0.7457 6 6 3.4693 -1.2348 0.7687 7 6 4.4858 -1.5494 1.5692 8 6 4.3166 -1.4941 3.0272 9 8 3.2485 -1.1614 3.5030 10 8 5.3459 -1.8121 3.8377 11 6 5.1241 -1.7401 5.1657 12 1 4.1553 -1.4385 5.5359 13 6 6.1410 -2.0535 6.0573 14 7 7.3195 -2.4209 5.6070 15 14 5.8335 -1.9544 7.8971 16 1 5.3374 -3.2655 8.3875 17 1 7.1001 -1.6129 8.5930 18 1 4.8186 -0.9062 8.1737 19 6 2.0791 -0.8080 1.2050 20 1 -0.3634 -1.0258 0.0617 21 1 -0.3634 0.5662 0.8576 22 1 -0.3634 0.4596 -0.9191 23 1 2.1531 -0.1591 -2.0889 24 1 1.4529 -1.6649 -1.4140 25 1 4.2364 -0.5458 -1.1147 26 1 3.6964 -2.2476 -1.1109 27 1 5.4332 -1.8496 1.1465 28 1 8.0302 -2.6396 6.2300 29 1 1.4555 -1.6811 1.3970 30 1 2.1354 -0.1769 2.0920 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308278661.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:00 Heat of formation + Delta-G solvation = -105.409173 kcal Electronic energy + Delta-G solvation = -13489.607877 eV Core-core repulsion = 11055.909700 eV Total energy + Delta-G solvation = -2433.698177 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.104 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.03879 -39.37776 -37.16659 -34.32112 -33.66998 -30.79929 -28.46976 -27.29559 -25.23151 -22.50540 -21.00417 -19.92657 -19.35913 -18.34471 -16.89940 -16.47003 -16.33858 -16.19427 -15.31878 -14.60856 -14.36396 -14.03676 -13.68089 -13.60357 -13.11794 -12.99947 -12.53617 -12.38614 -12.34177 -12.14267 -12.01726 -11.77498 -11.42411 -11.40855 -10.75168 -10.71429 -10.11374 -8.56045 -6.33640 0.32583 1.32414 1.39766 1.50810 2.12410 2.19853 2.80159 3.00175 3.61688 3.73414 4.03927 4.18592 4.35464 4.47731 4.62755 4.63923 4.68797 4.88839 4.95643 5.01485 5.08694 5.13132 5.15231 5.25935 5.35320 5.45523 5.52443 5.70242 5.82924 6.67709 6.88771 7.78976 8.65575 Molecular weight = 210.10amu Principal moments of inertia in cm(-1) A = 0.063883 B = 0.006495 C = 0.005957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.196663 B = 4310.300859 C = 4699.215335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.096 4.096 3 H 0.077 0.923 4 C -0.110 4.110 5 C -0.095 4.095 6 C -0.030 4.030 7 C -0.205 4.205 8 C 0.425 3.575 9 O -0.578 6.578 10 O -0.247 6.247 11 C -0.421 4.421 12 H 0.081 0.919 13 C -0.007 4.007 14 N -0.904 5.904 15 Si 1.021 2.979 16 H -0.259 1.259 17 H -0.258 1.258 18 H -0.264 1.264 19 C -0.104 4.104 20 H 0.056 0.944 21 H 0.047 0.953 22 H 0.077 0.923 23 H 0.096 0.904 24 H 0.080 0.920 25 H 0.099 0.901 26 H 0.099 0.901 27 H 0.145 0.855 28 H 0.280 0.720 29 H 0.076 0.924 30 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.778 2.934 -12.621 15.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.115 4.115 3 H 0.095 0.905 4 C -0.147 4.147 5 C -0.131 4.131 6 C -0.031 4.031 7 C -0.224 4.224 8 C 0.276 3.724 9 O -0.479 6.479 10 O -0.156 6.156 11 C -0.497 4.497 12 H 0.099 0.901 13 C -0.207 4.207 14 N -0.542 5.542 15 Si 0.840 3.160 16 H -0.183 1.183 17 H -0.182 1.182 18 H -0.188 1.188 19 C -0.141 4.141 20 H 0.075 0.925 21 H 0.066 0.934 22 H 0.096 0.904 23 H 0.114 0.886 24 H 0.099 0.901 25 H 0.117 0.883 26 H 0.117 0.883 27 H 0.163 0.837 28 H 0.089 0.911 29 H 0.095 0.905 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.819 2.946 -12.434 15.526 hybrid contribution 0.209 -0.085 1.196 1.217 sum -8.610 2.861 -11.238 14.443 Atomic orbital electron populations 1.21727 0.93528 1.02122 1.02291 1.22233 0.96672 0.98813 0.93773 0.90451 1.22470 0.94264 1.00421 0.97561 1.21429 0.99987 1.03983 0.87703 1.23328 0.93882 0.88270 0.97625 1.21238 1.01925 1.11786 0.87477 1.22156 0.82419 0.77612 0.90214 1.90552 1.28809 1.49941 1.78551 1.83968 1.39207 1.73368 1.19040 1.21466 1.00316 1.49433 0.78438 0.90109 1.26626 0.93657 0.94593 1.05826 1.70072 1.03442 1.42669 1.37981 0.84585 0.78769 0.79633 0.73056 1.18326 1.18171 1.18795 1.21873 0.92758 1.00297 0.99182 0.92476 0.93418 0.90449 0.88590 0.90150 0.88301 0.88269 0.83705 0.91110 0.90531 0.92129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 9.29 71.98 0.67 -1.97 16 2 C -0.10 -2.18 3.54 -9.39 -0.03 -2.21 16 3 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 4 C -0.11 -1.90 6.32 31.71 0.20 -1.70 16 5 C -0.09 -2.01 6.61 30.52 0.20 -1.81 16 6 C -0.03 -1.00 6.15 -16.99 -0.10 -1.10 16 7 C -0.21 -8.53 10.06 23.39 0.24 -8.30 16 8 C 0.42 23.37 7.84 70.08 0.55 23.92 16 9 O -0.58 -33.39 13.00 19.61 0.25 -33.14 16 10 O -0.25 -15.69 9.75 10.73 0.10 -15.58 16 11 C -0.42 -26.94 9.65 67.96 0.66 -26.28 16 12 H 0.08 5.22 6.86 -2.91 -0.02 5.20 16 13 C -0.01 -0.42 5.50 84.90 0.47 0.04 16 14 N -0.90 -55.52 13.67 21.64 0.30 -55.22 16 15 Si 1.02 44.93 29.55 68.60 2.03 46.96 16 16 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 17 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 18 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 19 C -0.10 -3.43 4.88 30.94 0.15 -3.28 16 20 H 0.06 1.06 8.08 -2.38 -0.02 1.04 16 21 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 22 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 23 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 24 H 0.08 1.24 8.04 -2.39 -0.02 1.22 16 25 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.15 5.39 8.06 -2.91 -0.02 5.37 16 28 H 0.28 15.45 8.31 -92.70 -0.77 14.67 16 29 H 0.08 2.57 8.01 -2.39 -0.02 2.55 16 30 H 0.06 2.48 6.25 -2.38 -0.01 2.47 16 Total: -1.00 -75.74 259.60 6.79 -68.95 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: 1.12 Total: 10.71 kcal Atomic # 6 Polarization: -25.67 SS G_CDS: 2.99 Total: -22.68 kcal Atomic # 7 Polarization: -55.52 SS G_CDS: 0.30 Total: -55.22 kcal Atomic # 8 Polarization: -49.08 SS G_CDS: 0.36 Total: -48.72 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -75.74 6.79 -68.95 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308278661.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.457 kcal (2) G-P(sol) polarization free energy of solvation -75.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds