Wall clock time and date at job start Sun Mar 29 2020 21:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46899 * 109.47300 * 2 1 4 4 C 1.46899 * 110.99972 * 287.96923 * 3 2 1 5 5 C 1.50695 * 109.47360 * 160.36154 * 4 3 2 6 6 H 1.08005 * 119.99994 * 4.66310 * 5 4 3 7 7 C 1.37885 * 120.00151 * 184.66833 * 5 4 3 8 8 N 1.31509 * 119.99947 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99845 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47593 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47307 * 120.00029 * 9 7 5 12 12 H 1.48510 * 109.47071 * 240.00186 * 9 7 5 13 13 C 1.46907 * 111.00260 * 164.01977 * 3 2 1 14 14 C 1.50699 * 109.46587 * 293.95203 * 13 3 2 15 15 C 1.41381 * 126.80093 * 94.71262 * 14 13 3 16 16 C 1.35446 * 103.98441 * 180.25799 * 15 14 13 17 17 O 1.34033 * 106.44949 * 359.97438 * 16 15 14 18 18 N 1.20924 * 111.56417 * 359.97438 * 17 16 15 19 19 H 1.09000 * 109.47227 * 179.35688 * 1 2 3 20 20 H 1.08998 * 109.47097 * 299.35519 * 1 2 3 21 21 H 1.09001 * 109.46977 * 59.35221 * 1 2 3 22 22 H 1.09001 * 109.47007 * 239.99660 * 2 1 3 23 23 H 1.09007 * 109.47227 * 119.99681 * 2 1 3 24 24 H 1.09003 * 109.47736 * 280.36678 * 4 3 2 25 25 H 1.09002 * 109.47105 * 40.36462 * 4 3 2 26 26 H 0.96999 * 120.00026 * 179.97438 * 8 7 5 27 27 H 1.08994 * 109.46793 * 173.95014 * 13 3 2 28 28 H 1.09003 * 109.46488 * 53.94794 * 13 3 2 29 29 H 1.08004 * 128.00602 * 0.23552 * 15 14 13 30 30 H 1.08001 * 126.77508 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7963 2.0223 -1.3045 5 6 1.8476 3.5202 -1.1472 6 1 2.1024 3.9544 -0.1917 7 6 1.5691 4.3364 -2.2231 8 7 1.2592 3.8076 -3.3867 9 14 1.6334 6.1930 -2.0282 10 1 2.0042 6.5316 -0.6306 11 1 2.6456 6.7537 -2.9590 12 1 0.3009 6.7699 -2.3398 13 6 3.4383 1.4418 0.3776 14 6 3.5940 1.0065 1.8119 15 6 3.9064 -0.2928 2.2734 16 6 3.9254 -0.1655 3.6218 17 8 3.6431 1.1179 3.8858 18 7 3.4636 1.7513 2.8714 19 1 -0.3634 -1.0276 -0.0115 20 1 -0.3633 0.5038 0.8957 21 1 -0.3633 0.5239 -0.8841 22 1 1.8933 -0.5139 -0.8900 23 1 1.8934 -0.5138 0.8901 24 1 2.5708 1.7035 -2.0022 25 1 0.8188 1.7307 -1.6888 26 1 1.0630 4.3818 -4.1434 27 1 3.8032 2.4628 0.2660 28 1 4.0129 0.7778 -0.2682 29 1 4.0875 -1.1813 1.6867 30 1 4.1280 -0.9443 4.3420 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308285659.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:48 Heat of formation + Delta-G solvation = 63.939105 kcal Electronic energy + Delta-G solvation = -13825.334728 eV Core-core repulsion = 11431.272794 eV Total energy + Delta-G solvation = -2394.061934 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -44.63041 -37.20949 -33.75754 -32.53550 -31.45824 -30.11833 -27.55111 -25.13553 -22.96079 -22.44122 -21.13943 -19.60516 -17.45300 -17.26417 -16.41747 -15.19149 -14.78547 -14.20877 -13.87160 -13.68747 -13.16747 -12.92597 -12.11500 -11.80421 -11.36243 -11.22951 -11.16068 -10.82986 -10.73003 -10.55548 -10.28141 -9.84577 -9.72767 -9.34325 -9.16841 -8.40732 -7.30070 -6.00859 -4.01547 1.77005 2.55742 3.33554 3.40963 3.48085 3.52595 4.45707 4.57065 4.80154 5.06684 5.35346 5.37650 5.53347 5.66787 5.74581 5.89913 6.06993 6.14524 6.21071 6.31153 6.47470 6.57518 6.81342 7.19584 7.30026 7.84364 8.09499 8.16523 8.53323 8.64982 9.07084 9.62790 11.09779 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.035076 B = 0.008671 C = 0.007461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.082162 B = 3228.491651 C = 3752.104359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.048 3.952 3 N -0.529 5.529 4 C 0.191 3.809 5 C -0.504 4.504 6 H 0.064 0.936 7 C 0.055 3.945 8 N -0.901 5.901 9 Si 0.896 3.104 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.284 1.284 13 C 0.135 3.865 14 C 0.037 3.963 15 C -0.233 4.233 16 C -0.076 4.076 17 O 0.094 5.906 18 N -0.348 5.348 19 H 0.045 0.955 20 H 0.055 0.945 21 H 0.062 0.938 22 H 0.023 0.977 23 H 0.058 0.942 24 H -0.009 1.009 25 H 0.041 0.959 26 H 0.260 0.740 27 H 0.099 0.901 28 H 0.044 0.956 29 H 0.166 0.834 30 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.370 -9.918 9.787 14.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.080 4.080 3 N -0.255 5.255 4 C 0.067 3.933 5 C -0.543 4.543 6 H 0.082 0.918 7 C -0.146 4.146 8 N -0.541 5.541 9 Si 0.724 3.276 10 H -0.196 1.196 11 H -0.211 1.211 12 H -0.210 1.210 13 C 0.006 3.994 14 C -0.123 4.123 15 C -0.255 4.255 16 C -0.157 4.157 17 O 0.027 5.973 18 N -0.051 5.051 19 H 0.064 0.936 20 H 0.074 0.926 21 H 0.081 0.919 22 H 0.041 0.959 23 H 0.076 0.924 24 H 0.009 0.991 25 H 0.059 0.941 26 H 0.070 0.930 27 H 0.117 0.883 28 H 0.062 0.938 29 H 0.183 0.817 30 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 3.765 -8.298 10.141 13.634 hybrid contribution 0.606 -0.426 -0.985 1.233 sum 4.371 -8.724 9.156 13.381 Atomic orbital electron populations 1.21732 0.95424 0.99922 1.02939 1.22057 0.96188 0.90766 0.99029 1.62126 1.14113 1.14565 1.34714 1.19822 0.96715 0.94354 0.82424 1.21239 1.46004 0.90610 0.96444 0.91759 1.24977 0.95437 0.99012 0.95176 1.69962 1.47896 1.35162 1.01030 0.86460 0.77568 0.85327 0.78232 1.19573 1.21123 1.21015 1.20308 0.91394 1.02338 0.85384 1.23838 1.00622 0.90318 0.97547 1.22766 1.08801 0.99289 0.94641 1.25893 1.03831 0.88428 0.97573 1.84869 1.64404 1.18492 1.29526 1.73896 1.17752 1.20151 0.93323 0.93616 0.92551 0.91898 0.95868 0.92358 0.99148 0.94149 0.93008 0.88305 0.93825 0.81688 0.77307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 9.99 37.16 0.37 -2.15 16 2 C 0.05 0.89 5.55 -3.82 -0.02 0.87 16 3 N -0.53 -11.74 4.37 -237.51 -1.04 -12.78 16 4 C 0.19 5.01 4.59 -4.98 -0.02 4.98 16 5 C -0.50 -14.47 8.61 -34.44 -0.30 -14.76 16 6 H 0.06 1.88 7.66 -52.48 -0.40 1.48 16 7 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16 9 Si 0.90 22.17 29.54 -169.99 -5.02 17.15 16 10 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 13 C 0.13 2.69 5.38 -4.97 -0.03 2.66 16 14 C 0.04 0.65 6.07 -82.10 -0.50 0.15 16 15 C -0.23 -3.09 9.77 -39.38 -0.38 -3.48 16 16 C -0.08 -0.85 12.30 29.74 0.37 -0.49 16 17 O 0.09 1.42 11.20 17.19 0.19 1.62 16 18 N -0.35 -6.51 12.07 33.42 0.40 -6.10 16 19 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 20 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 21 H 0.06 1.23 6.52 -51.93 -0.34 0.89 16 22 H 0.02 0.42 8.05 -51.93 -0.42 0.00 16 23 H 0.06 0.97 5.84 -51.93 -0.30 0.67 16 24 H -0.01 -0.25 8.00 -51.93 -0.42 -0.67 16 25 H 0.04 1.12 6.24 -51.93 -0.32 0.79 16 26 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 27 H 0.10 2.18 7.32 -51.93 -0.38 1.80 16 28 H 0.04 0.80 8.12 -51.93 -0.42 0.38 16 29 H 0.17 1.75 8.06 -52.48 -0.42 1.33 16 30 H 0.21 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 257.96 15.07 3.89 3.89 Total: -1.00 -31.87 257.96 -5.28 -37.15 By element: Atomic # 1 Polarization: -0.18 SS G_CDS: -3.83 Total: -4.01 kcal Atomic # 6 Polarization: -10.11 SS G_CDS: -0.61 Total: -10.72 kcal Atomic # 7 Polarization: -45.17 SS G_CDS: 0.10 Total: -45.07 kcal Atomic # 8 Polarization: 1.42 SS G_CDS: 0.19 Total: 1.62 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -31.87 -5.28 -37.15 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308285659.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.091 kcal (2) G-P(sol) polarization free energy of solvation -31.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds