Wall clock time and date at job start Sun Mar 29 2020 21:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46899 * 109.47300 * 2 1 4 4 C 1.46899 * 110.99972 * 287.96923 * 3 2 1 5 5 C 1.50695 * 109.47360 * 160.36154 * 4 3 2 6 6 H 1.08005 * 119.99994 * 4.66310 * 5 4 3 7 7 C 1.37885 * 120.00151 * 184.66833 * 5 4 3 8 8 N 1.31509 * 119.99947 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99845 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47593 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47307 * 120.00029 * 9 7 5 12 12 H 1.48510 * 109.47071 * 240.00186 * 9 7 5 13 13 C 1.46907 * 111.00260 * 164.01977 * 3 2 1 14 14 C 1.50699 * 109.46587 * 293.95203 * 13 3 2 15 15 C 1.41381 * 126.80093 * 94.71262 * 14 13 3 16 16 C 1.35446 * 103.98441 * 180.25799 * 15 14 13 17 17 O 1.34033 * 106.44949 * 359.97438 * 16 15 14 18 18 N 1.20924 * 111.56417 * 359.97438 * 17 16 15 19 19 H 1.09000 * 109.47227 * 179.35688 * 1 2 3 20 20 H 1.08998 * 109.47097 * 299.35519 * 1 2 3 21 21 H 1.09001 * 109.46977 * 59.35221 * 1 2 3 22 22 H 1.09001 * 109.47007 * 239.99660 * 2 1 3 23 23 H 1.09007 * 109.47227 * 119.99681 * 2 1 3 24 24 H 1.09003 * 109.47736 * 280.36678 * 4 3 2 25 25 H 1.09002 * 109.47105 * 40.36462 * 4 3 2 26 26 H 0.96999 * 120.00026 * 179.97438 * 8 7 5 27 27 H 1.08994 * 109.46793 * 173.95014 * 13 3 2 28 28 H 1.09003 * 109.46488 * 53.94794 * 13 3 2 29 29 H 1.08004 * 128.00602 * 0.23552 * 15 14 13 30 30 H 1.08001 * 126.77508 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7963 2.0223 -1.3045 5 6 1.8476 3.5202 -1.1472 6 1 2.1024 3.9544 -0.1917 7 6 1.5691 4.3364 -2.2231 8 7 1.2592 3.8076 -3.3867 9 14 1.6334 6.1930 -2.0282 10 1 2.0042 6.5316 -0.6306 11 1 2.6456 6.7537 -2.9590 12 1 0.3009 6.7699 -2.3398 13 6 3.4383 1.4418 0.3776 14 6 3.5940 1.0065 1.8119 15 6 3.9064 -0.2928 2.2734 16 6 3.9254 -0.1655 3.6218 17 8 3.6431 1.1179 3.8858 18 7 3.4636 1.7513 2.8714 19 1 -0.3634 -1.0276 -0.0115 20 1 -0.3633 0.5038 0.8957 21 1 -0.3633 0.5239 -0.8841 22 1 1.8933 -0.5139 -0.8900 23 1 1.8934 -0.5138 0.8901 24 1 2.5708 1.7035 -2.0022 25 1 0.8188 1.7307 -1.6888 26 1 1.0630 4.3818 -4.1434 27 1 3.8032 2.4628 0.2660 28 1 4.0129 0.7778 -0.2682 29 1 4.0875 -1.1813 1.6867 30 1 4.1280 -0.9443 4.3420 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308285659.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:48 Heat of formation + Delta-G solvation = 41.422868 kcal Electronic energy + Delta-G solvation = -13826.311105 eV Core-core repulsion = 11431.272794 eV Total energy + Delta-G solvation = -2395.038311 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -45.84018 -38.88252 -35.22216 -34.52413 -32.60508 -31.68669 -29.47944 -26.87263 -24.57726 -23.84992 -22.54950 -21.10944 -18.68555 -18.61206 -18.41977 -16.86042 -16.53634 -15.83553 -15.44330 -15.21608 -14.54549 -14.23426 -14.09032 -13.38117 -13.09582 -12.94497 -12.70615 -12.65090 -12.44640 -12.15433 -12.05406 -11.58569 -11.37178 -10.94837 -10.62430 -10.45842 -9.07282 -8.22878 -6.32134 0.76348 1.34288 1.36787 1.37660 1.51836 2.38128 2.61573 3.07855 3.26632 3.38122 3.81349 4.17102 4.29873 4.38820 4.44555 4.58560 4.66169 4.77940 4.87871 4.93497 4.98278 5.19962 5.22376 5.23902 5.34444 5.63773 6.05229 6.30005 6.58770 6.82473 7.37003 7.54146 8.87547 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.035076 B = 0.008671 C = 0.007461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.082162 B = 3228.491651 C = 3752.104359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.047 3.953 3 N -0.544 5.544 4 C 0.208 3.792 5 C -0.523 4.523 6 H 0.050 0.950 7 C 0.006 3.994 8 N -0.931 5.931 9 Si 0.964 3.036 10 H -0.272 1.272 11 H -0.274 1.274 12 H -0.275 1.275 13 C 0.139 3.861 14 C 0.009 3.991 15 C -0.238 4.238 16 C -0.044 4.044 17 O 0.094 5.906 18 N -0.394 5.394 19 H 0.083 0.917 20 H 0.048 0.952 21 H 0.034 0.966 22 H 0.027 0.973 23 H 0.085 0.915 24 H -0.032 1.032 25 H 0.020 0.980 26 H 0.266 0.734 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.194 0.806 30 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.809 -11.275 11.392 16.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.080 4.080 3 N -0.270 5.270 4 C 0.082 3.918 5 C -0.561 4.561 6 H 0.069 0.931 7 C -0.192 4.192 8 N -0.572 5.572 9 Si 0.789 3.211 10 H -0.196 1.196 11 H -0.199 1.199 12 H -0.200 1.200 13 C 0.010 3.990 14 C -0.149 4.149 15 C -0.260 4.260 16 C -0.125 4.125 17 O 0.026 5.974 18 N -0.097 5.097 19 H 0.102 0.898 20 H 0.067 0.933 21 H 0.053 0.947 22 H 0.046 0.954 23 H 0.103 0.897 24 H -0.014 1.014 25 H 0.038 0.962 26 H 0.074 0.926 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.211 0.789 30 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges 4.207 -9.662 11.744 15.779 hybrid contribution 0.503 -0.104 -1.401 1.492 sum 4.710 -9.767 10.344 14.985 Atomic orbital electron populations 1.21704 0.94884 1.01822 1.01099 1.22174 0.96627 0.88799 1.00426 1.62011 1.15930 1.16997 1.32040 1.19433 0.94686 0.93580 0.84062 1.21465 1.46354 0.92270 0.96045 0.93141 1.25813 0.94818 1.03841 0.94755 1.70058 1.48365 1.36992 1.01743 0.85419 0.78071 0.79485 0.78167 1.19637 1.19939 1.20043 1.20105 0.90137 1.00820 0.87904 1.23675 1.02611 0.92628 0.96003 1.23051 1.09059 0.98180 0.95700 1.26923 1.00141 0.87432 0.98024 1.84808 1.63941 1.20314 1.28288 1.73899 1.19540 1.21994 0.94310 0.89800 0.93319 0.94724 0.95444 0.89662 1.01413 0.96231 0.92555 0.91833 0.92457 0.78873 0.71510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.76 9.99 71.98 0.72 -4.05 16 2 C 0.05 1.72 5.55 86.30 0.48 2.19 16 3 N -0.54 -24.68 4.37 -905.35 -3.96 -28.64 16 4 C 0.21 11.36 4.59 85.56 0.39 11.76 16 5 C -0.52 -31.12 8.61 25.60 0.22 -30.90 16 6 H 0.05 3.08 7.66 -2.91 -0.02 3.05 16 7 C 0.01 0.35 5.46 84.66 0.46 0.81 16 8 N -0.93 -56.78 13.29 21.45 0.28 -56.49 16 9 Si 0.96 46.21 29.54 68.60 2.03 48.24 16 10 H -0.27 -12.94 7.11 99.48 0.71 -12.24 16 11 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 12 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 13 C 0.14 5.69 5.38 85.56 0.46 6.15 16 14 C 0.01 0.32 6.07 43.58 0.26 0.58 16 15 C -0.24 -5.51 9.77 22.40 0.22 -5.30 16 16 C -0.04 -0.80 12.30 67.17 0.83 0.02 16 17 O 0.09 2.65 11.20 71.69 0.80 3.45 16 18 N -0.39 -14.56 12.07 -49.57 -0.60 -15.16 16 19 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 20 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 21 H 0.03 1.37 6.52 -2.39 -0.02 1.36 16 22 H 0.03 0.97 8.05 -2.39 -0.02 0.95 16 23 H 0.09 2.63 5.84 -2.38 -0.01 2.61 16 24 H -0.03 -1.83 8.00 -2.39 -0.02 -1.85 16 25 H 0.02 1.14 6.24 -2.39 -0.01 1.12 16 26 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 27 H 0.06 2.98 7.32 -2.39 -0.02 2.96 16 28 H 0.06 2.13 8.12 -2.39 -0.02 2.11 16 29 H 0.19 3.25 8.06 -2.91 -0.02 3.22 16 30 H 0.27 1.37 8.06 -2.91 -0.02 1.35 16 Total: -1.00 -72.02 257.96 3.72 -68.30 By element: Atomic # 1 Polarization: -2.09 SS G_CDS: 1.12 Total: -0.97 kcal Atomic # 6 Polarization: -22.77 SS G_CDS: 4.04 Total: -18.73 kcal Atomic # 7 Polarization: -96.02 SS G_CDS: -4.27 Total: -100.29 kcal Atomic # 8 Polarization: 2.65 SS G_CDS: 0.80 Total: 3.45 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal Total: -72.02 3.72 -68.30 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308285659.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.720 kcal (2) G-P(sol) polarization free energy of solvation -72.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds