Wall clock time and date at job start Sun Mar 29 2020 21:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50699 * 120.00130 * 2 1 4 4 C 1.52992 * 109.47533 * 124.99702 * 3 2 1 5 5 C 1.50701 * 112.84974 * 309.66705 * 4 3 2 6 6 O 1.21209 * 120.00038 * 228.79791 * 5 4 3 7 7 O 1.34313 * 119.99907 * 48.80570 * 5 4 3 8 8 C 1.34920 * 116.99732 * 179.97438 * 7 5 4 9 9 H 1.07997 * 119.99930 * 359.72937 * 8 7 5 10 10 C 1.38755 * 119.99673 * 179.97438 * 8 7 5 11 11 N 1.31444 * 119.99829 * 359.72638 * 10 8 7 12 12 Si 1.86798 * 119.99689 * 179.72861 * 10 8 7 13 13 H 1.48493 * 109.47326 * 90.00370 * 12 10 8 14 14 H 1.48506 * 109.46545 * 210.00120 * 12 10 8 15 15 H 1.48498 * 109.47210 * 329.99831 * 12 10 8 16 16 C 1.53783 * 113.68959 * 80.93513 * 4 3 2 17 17 C 1.53787 * 87.08022 * 89.13060 * 16 4 3 18 18 C 1.53776 * 87.08091 * 25.43311 * 17 16 4 19 19 H 1.08007 * 119.99980 * 180.02562 * 1 2 3 20 20 H 1.07998 * 120.00361 * 0.02562 * 1 2 3 21 21 H 1.08002 * 119.99879 * 179.97438 * 2 1 3 22 22 H 1.08999 * 109.47058 * 4.99337 * 3 2 1 23 23 H 1.09007 * 109.47233 * 245.00409 * 3 2 1 24 24 H 0.97000 * 119.99492 * 180.02562 * 11 10 8 25 25 H 1.08999 * 113.61313 * 203.67232 * 16 4 3 26 26 H 1.08999 * 113.61453 * 334.58032 * 16 4 3 27 27 H 1.09004 * 113.60821 * 270.88002 * 17 16 4 28 28 H 1.08998 * 113.61429 * 139.98619 * 17 16 4 29 29 H 1.09006 * 113.61327 * 220.02494 * 18 17 16 30 30 H 1.09001 * 113.61558 * 89.12131 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0349 1.3332 1.1816 5 6 2.3770 0.9733 2.4888 6 8 2.5444 1.6729 3.4643 7 8 1.6054 -0.1229 2.5728 8 6 1.0467 -0.3881 3.7719 9 1 1.2323 0.2663 4.6107 10 6 0.2377 -1.5045 3.9286 11 7 0.0113 -2.3006 2.9074 12 14 -0.5297 -1.8759 5.5906 13 1 -1.8541 -1.2107 5.6842 14 1 -0.7012 -3.3434 5.7397 15 1 0.3562 -1.3689 6.6693 16 6 4.3460 0.5725 0.9218 17 6 4.9072 1.8898 0.3607 18 6 3.8836 2.6137 1.2511 19 1 -0.5400 -0.9354 0.0004 20 1 -0.5400 0.9353 -0.0004 21 1 1.8499 -0.9353 0.0004 22 1 1.3585 2.1316 0.0894 23 1 2.6212 1.4026 -0.9315 24 1 -0.5546 -3.0808 3.0169 25 1 4.8444 0.2381 1.8316 26 1 4.2528 -0.2157 0.1748 27 1 4.7279 2.0213 -0.7065 28 1 5.9428 2.0788 0.6433 29 1 3.4170 3.4734 0.7699 30 1 4.2556 2.8374 2.2510 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308324784.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:55 Heat of formation + Delta-G solvation = -45.581397 kcal Electronic energy + Delta-G solvation = -14309.231077 eV Core-core repulsion = 11878.127227 eV Total energy + Delta-G solvation = -2431.103850 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.104 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.91800 -37.64306 -34.89710 -33.50699 -31.99938 -28.00535 -25.60000 -25.24277 -23.95678 -20.78722 -19.24499 -17.89830 -17.57266 -16.56320 -15.12803 -14.96621 -14.33620 -14.25290 -13.77426 -13.23568 -13.04419 -12.13205 -12.00018 -11.67733 -11.48721 -11.24073 -11.11295 -10.63515 -10.47310 -10.39890 -10.30561 -10.03093 -9.81367 -9.67776 -8.73747 -8.48558 -8.30668 -6.31514 -3.97093 3.14763 3.21895 3.24454 3.28972 3.64055 4.03268 4.64443 4.88129 4.95964 5.09575 5.24053 5.30631 5.68776 5.84870 5.87982 5.98086 6.09089 6.12236 6.20599 6.25160 6.41311 6.54847 6.69055 6.86447 7.02059 7.49158 7.53357 7.73724 8.06200 8.84664 9.18268 10.01971 10.85904 Molecular weight = 210.10amu Principal moments of inertia in cm(-1) A = 0.039745 B = 0.010755 C = 0.009287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.316847 B = 2602.825870 C = 3014.112250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.137 4.137 3 C -0.061 4.061 4 C -0.066 4.066 5 C 0.410 3.590 6 O -0.562 6.562 7 O -0.196 6.196 8 C -0.382 4.382 9 H 0.090 0.910 10 C 0.045 3.955 11 N -0.860 5.860 12 Si 0.936 3.064 13 H -0.275 1.275 14 H -0.279 1.279 15 H -0.269 1.269 16 C -0.119 4.119 17 C -0.141 4.141 18 C -0.117 4.117 19 H 0.097 0.903 20 H 0.079 0.921 21 H 0.108 0.892 22 H 0.065 0.935 23 H 0.073 0.927 24 H 0.266 0.734 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.633 4.175 -6.761 9.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.155 4.155 3 C -0.099 4.099 4 C -0.067 4.067 5 C 0.256 3.744 6 O -0.460 6.460 7 O -0.102 6.102 8 C -0.458 4.458 9 H 0.107 0.893 10 C -0.159 4.159 11 N -0.497 5.497 12 Si 0.761 3.239 13 H -0.201 1.201 14 H -0.205 1.205 15 H -0.193 1.193 16 C -0.156 4.156 17 C -0.178 4.178 18 C -0.154 4.154 19 H 0.115 0.885 20 H 0.097 0.903 21 H 0.126 0.874 22 H 0.084 0.916 23 H 0.091 0.909 24 H 0.075 0.925 25 H 0.101 0.899 26 H 0.093 0.907 27 H 0.099 0.901 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.539 4.129 -6.553 8.978 hybrid contribution -0.501 -0.269 1.046 1.191 sum 4.039 3.860 -5.507 7.845 Atomic orbital electron populations 1.23500 0.95866 1.00722 1.00430 1.22440 0.95946 0.97033 1.00083 1.20484 0.96872 0.96965 0.95535 1.21628 0.94377 0.98321 0.92371 1.22918 0.80422 0.81590 0.89462 1.90518 1.63161 1.53139 1.39180 1.83990 1.52477 1.38444 1.35333 1.21192 1.27712 1.10231 0.86712 0.89263 1.25208 0.96614 0.95028 0.99035 1.69991 1.35903 1.13882 1.29919 0.85790 0.79388 0.77656 0.81055 1.20090 1.20481 1.19325 1.22879 0.94533 0.96748 1.01488 1.22842 0.98766 0.96852 0.99367 1.22912 0.96021 0.95427 1.01027 0.88464 0.90286 0.87411 0.91617 0.90903 0.92451 0.89898 0.90653 0.90127 0.91415 0.91374 0.88855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.38 14.13 29.02 0.41 -2.97 16 2 C -0.14 -2.69 7.04 -36.02 -0.25 -2.94 16 3 C -0.06 -1.05 5.07 -27.89 -0.14 -1.20 16 4 C -0.07 -1.25 0.97 -154.85 -0.15 -1.40 16 5 C 0.41 10.42 6.94 36.01 0.25 10.67 16 6 O -0.56 -15.73 15.14 -19.05 -0.29 -16.02 16 7 O -0.20 -5.55 7.22 -20.71 -0.15 -5.70 16 8 C -0.38 -11.40 9.64 30.92 0.30 -11.10 16 9 H 0.09 2.74 6.86 -52.49 -0.36 2.38 16 10 C 0.05 1.27 5.49 -17.53 -0.10 1.17 16 11 N -0.86 -24.63 13.67 55.48 0.76 -23.87 16 12 Si 0.94 21.66 29.55 -169.99 -5.02 16.64 16 13 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 14 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 15 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 16 C -0.12 -1.95 7.18 -25.91 -0.19 -2.13 16 17 C -0.14 -1.86 7.73 -25.92 -0.20 -2.06 16 18 C -0.12 -1.88 7.00 -25.92 -0.18 -2.07 16 19 H 0.10 2.04 8.06 -52.48 -0.42 1.61 16 20 H 0.08 1.48 7.84 -52.49 -0.41 1.06 16 21 H 0.11 2.22 8.06 -52.49 -0.42 1.80 16 22 H 0.07 1.11 7.79 -51.93 -0.40 0.71 16 23 H 0.07 1.02 7.34 -51.93 -0.38 0.64 16 24 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 25 H 0.08 1.44 8.09 -51.93 -0.42 1.02 16 26 H 0.07 1.14 8.10 -51.93 -0.42 0.72 16 27 H 0.08 0.91 7.64 -51.93 -0.40 0.52 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.07 0.98 8.10 -51.93 -0.42 0.56 16 30 H 0.09 1.66 7.43 -51.93 -0.39 1.27 16 LS Contribution 259.85 15.07 3.92 3.92 Total: -1.00 -32.06 259.85 -5.04 -37.11 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -4.00 Total: 1.96 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: -0.25 Total: -14.03 kcal Atomic # 7 Polarization: -24.63 SS G_CDS: 0.76 Total: -23.87 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -0.44 Total: -21.72 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -32.06 -5.04 -37.11 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308324784.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.476 kcal (2) G-P(sol) polarization free energy of solvation -32.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds