Wall clock time and date at job start Sun Mar 29 2020 21:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50699 * 120.00130 * 2 1 4 4 C 1.52992 * 109.47533 * 124.99702 * 3 2 1 5 5 C 1.50701 * 112.84974 * 309.66705 * 4 3 2 6 6 O 1.21209 * 120.00038 * 228.79791 * 5 4 3 7 7 O 1.34313 * 119.99907 * 48.80570 * 5 4 3 8 8 C 1.34920 * 116.99732 * 179.97438 * 7 5 4 9 9 H 1.07997 * 119.99930 * 359.72937 * 8 7 5 10 10 C 1.38755 * 119.99673 * 179.97438 * 8 7 5 11 11 N 1.31444 * 119.99829 * 359.72638 * 10 8 7 12 12 Si 1.86798 * 119.99689 * 179.72861 * 10 8 7 13 13 H 1.48493 * 109.47326 * 90.00370 * 12 10 8 14 14 H 1.48506 * 109.46545 * 210.00120 * 12 10 8 15 15 H 1.48498 * 109.47210 * 329.99831 * 12 10 8 16 16 C 1.53783 * 113.68959 * 80.93513 * 4 3 2 17 17 C 1.53787 * 87.08022 * 89.13060 * 16 4 3 18 18 C 1.53776 * 87.08091 * 25.43311 * 17 16 4 19 19 H 1.08007 * 119.99980 * 180.02562 * 1 2 3 20 20 H 1.07998 * 120.00361 * 0.02562 * 1 2 3 21 21 H 1.08002 * 119.99879 * 179.97438 * 2 1 3 22 22 H 1.08999 * 109.47058 * 4.99337 * 3 2 1 23 23 H 1.09007 * 109.47233 * 245.00409 * 3 2 1 24 24 H 0.97000 * 119.99492 * 180.02562 * 11 10 8 25 25 H 1.08999 * 113.61313 * 203.67232 * 16 4 3 26 26 H 1.08999 * 113.61453 * 334.58032 * 16 4 3 27 27 H 1.09004 * 113.60821 * 270.88002 * 17 16 4 28 28 H 1.08998 * 113.61429 * 139.98619 * 17 16 4 29 29 H 1.09006 * 113.61327 * 220.02494 * 18 17 16 30 30 H 1.09001 * 113.61558 * 89.12131 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0349 1.3332 1.1816 5 6 2.3770 0.9733 2.4888 6 8 2.5444 1.6729 3.4643 7 8 1.6054 -0.1229 2.5728 8 6 1.0467 -0.3881 3.7719 9 1 1.2323 0.2663 4.6107 10 6 0.2377 -1.5045 3.9286 11 7 0.0113 -2.3006 2.9074 12 14 -0.5297 -1.8759 5.5906 13 1 -1.8541 -1.2107 5.6842 14 1 -0.7012 -3.3434 5.7397 15 1 0.3562 -1.3689 6.6693 16 6 4.3460 0.5725 0.9218 17 6 4.9072 1.8898 0.3607 18 6 3.8836 2.6137 1.2511 19 1 -0.5400 -0.9354 0.0004 20 1 -0.5400 0.9353 -0.0004 21 1 1.8499 -0.9353 0.0004 22 1 1.3585 2.1316 0.0894 23 1 2.6212 1.4026 -0.9315 24 1 -0.5546 -3.0808 3.0169 25 1 4.8444 0.2381 1.8316 26 1 4.2528 -0.2157 0.1748 27 1 4.7279 2.0213 -0.7065 28 1 5.9428 2.0788 0.6433 29 1 3.4170 3.4734 0.7699 30 1 4.2556 2.8374 2.2510 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308324784.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:55 Heat of formation + Delta-G solvation = -64.813498 kcal Electronic energy + Delta-G solvation = -14310.065044 eV Core-core repulsion = 11878.127227 eV Total energy + Delta-G solvation = -2431.937817 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.104 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.60735 -39.40410 -36.99566 -35.02319 -34.17656 -29.50888 -27.55562 -26.61987 -25.56790 -22.47669 -20.78525 -19.75054 -19.50323 -18.29150 -17.03902 -16.58123 -16.24683 -15.99908 -15.20997 -14.94733 -14.65516 -13.81734 -13.64052 -13.33246 -13.13815 -12.90111 -12.59920 -12.34588 -12.19561 -12.00724 -11.93673 -11.80861 -11.41069 -11.15810 -10.67727 -10.62121 -9.88689 -8.46899 -6.24157 1.30071 1.32573 1.47501 1.60384 1.75464 2.14391 2.86499 3.02787 3.52202 3.66601 3.87458 3.92112 4.29655 4.41897 4.57461 4.66709 4.80637 4.87332 4.89885 5.00160 5.06568 5.13255 5.23816 5.25910 5.28331 5.54152 5.89470 5.94137 6.17788 6.75828 6.98278 7.89331 8.71369 Molecular weight = 210.10amu Principal moments of inertia in cm(-1) A = 0.039745 B = 0.010755 C = 0.009287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.316847 B = 2602.825870 C = 3014.112250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.135 4.135 3 C -0.054 4.054 4 C -0.078 4.078 5 C 0.400 3.600 6 O -0.597 6.597 7 O -0.213 6.213 8 C -0.424 4.424 9 H 0.068 0.932 10 C 0.006 3.994 11 N -0.884 5.884 12 Si 1.004 2.996 13 H -0.264 1.264 14 H -0.260 1.260 15 H -0.270 1.270 16 C -0.124 4.124 17 C -0.111 4.111 18 C -0.117 4.117 19 H 0.079 0.921 20 H 0.091 0.909 21 H 0.093 0.907 22 H 0.068 0.932 23 H 0.120 0.880 24 H 0.275 0.725 25 H 0.062 0.938 26 H 0.089 0.911 27 H 0.115 0.885 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.261 4.659 -7.889 10.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.153 4.153 3 C -0.091 4.091 4 C -0.079 4.079 5 C 0.248 3.752 6 O -0.497 6.497 7 O -0.120 6.120 8 C -0.501 4.501 9 H 0.086 0.914 10 C -0.196 4.196 11 N -0.521 5.521 12 Si 0.825 3.175 13 H -0.188 1.188 14 H -0.184 1.184 15 H -0.195 1.195 16 C -0.162 4.162 17 C -0.148 4.148 18 C -0.155 4.155 19 H 0.098 0.902 20 H 0.110 0.890 21 H 0.111 0.889 22 H 0.087 0.913 23 H 0.138 0.862 24 H 0.084 0.916 25 H 0.080 0.920 26 H 0.107 0.893 27 H 0.133 0.867 28 H 0.106 0.894 29 H 0.109 0.891 30 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.176 4.613 -7.708 10.368 hybrid contribution -0.664 -0.414 1.393 1.597 sum 4.513 4.200 -6.315 8.825 Atomic orbital electron populations 1.23506 0.96326 1.00534 1.01764 1.22573 0.95896 0.97955 0.98917 1.20532 0.96711 0.95276 0.96564 1.22051 0.95250 1.01129 0.89443 1.24435 0.79027 0.80084 0.91649 1.90477 1.64057 1.53856 1.41283 1.84022 1.53422 1.39878 1.34695 1.21280 1.30172 1.11488 0.87125 0.91445 1.26238 0.96153 0.94007 1.03196 1.70065 1.35955 1.14141 1.31896 0.84811 0.78494 0.78453 0.75771 1.18841 1.18373 1.19481 1.22953 0.92914 0.98923 1.01372 1.22804 0.98908 0.92596 1.00454 1.22947 0.96421 0.95119 1.00985 0.90240 0.89045 0.88860 0.91345 0.86178 0.91606 0.91956 0.89280 0.86652 0.89351 0.89117 0.91273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.48 14.13 67.79 0.96 -6.52 16 2 C -0.14 -5.25 7.04 25.65 0.18 -5.07 16 3 C -0.05 -1.72 5.07 29.85 0.15 -1.57 16 4 C -0.08 -2.86 0.97 -52.40 -0.05 -2.91 16 5 C 0.40 20.83 6.94 71.24 0.49 21.32 16 6 O -0.60 -34.68 15.14 20.78 0.31 -34.36 16 7 O -0.21 -12.47 7.22 14.85 0.11 -12.37 16 8 C -0.42 -26.26 9.64 67.94 0.66 -25.60 16 9 H 0.07 4.35 6.86 -2.91 -0.02 4.33 16 10 C 0.01 0.33 5.49 84.87 0.47 0.79 16 11 N -0.88 -51.21 13.67 21.63 0.30 -50.92 16 12 Si 1.00 44.54 29.55 68.60 2.03 46.57 16 13 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 14 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 15 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 16 C -0.12 -3.82 7.18 31.12 0.22 -3.59 16 17 C -0.11 -2.44 7.73 31.12 0.24 -2.20 16 18 C -0.12 -3.51 7.00 31.12 0.22 -3.29 16 19 H 0.08 3.45 8.06 -2.91 -0.02 3.42 16 20 H 0.09 3.41 7.84 -2.91 -0.02 3.39 16 21 H 0.09 3.87 8.06 -2.91 -0.02 3.84 16 22 H 0.07 2.15 7.79 -2.39 -0.02 2.13 16 23 H 0.12 2.74 7.34 -2.38 -0.02 2.73 16 24 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 25 H 0.06 2.15 8.09 -2.39 -0.02 2.13 16 26 H 0.09 2.48 8.10 -2.39 -0.02 2.46 16 27 H 0.12 1.84 7.64 -2.38 -0.02 1.82 16 28 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.09 2.29 8.10 -2.38 -0.02 2.27 16 30 H 0.07 2.41 7.43 -2.39 -0.02 2.39 16 Total: -1.00 -72.34 259.85 7.39 -64.95 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: 1.11 Total: 14.77 kcal Atomic # 6 Polarization: -32.18 SS G_CDS: 3.54 Total: -28.64 kcal Atomic # 7 Polarization: -51.21 SS G_CDS: 0.30 Total: -50.92 kcal Atomic # 8 Polarization: -47.15 SS G_CDS: 0.42 Total: -46.73 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -72.34 7.39 -64.95 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308324784.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.134 kcal (2) G-P(sol) polarization free energy of solvation -72.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds