Wall clock time and date at job start Sun Mar 29 2020 21:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46896 * 109.47289 * 2 1 4 4 C 1.46906 * 110.99711 * 287.98256 * 3 2 1 5 5 C 1.50700 * 109.47118 * 160.35889 * 4 3 2 6 6 H 1.08000 * 119.99908 * 4.66676 * 5 4 3 7 7 C 1.37874 * 120.00094 * 184.66602 * 5 4 3 8 8 N 1.31519 * 120.00038 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00119 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47513 * 89.99923 * 9 7 5 11 11 H 1.48501 * 109.46817 * 210.00004 * 9 7 5 12 12 H 1.48499 * 109.47045 * 329.99550 * 9 7 5 13 13 C 1.46900 * 111.00463 * 164.03248 * 3 2 1 14 14 C 1.50694 * 109.46904 * 293.95307 * 13 3 2 15 15 C 1.34334 * 126.16849 * 94.98501 * 14 13 3 16 16 O 1.34759 * 107.11379 * 179.81181 * 15 14 13 17 17 C 1.33972 * 107.75311 * 0.35443 * 16 15 14 18 18 N 1.30252 * 108.76115 * 359.63616 * 17 16 15 19 19 H 1.08998 * 109.47102 * 299.37886 * 1 2 3 20 20 H 1.09000 * 109.46955 * 59.37843 * 1 2 3 21 21 H 1.08997 * 109.46983 * 179.37967 * 1 2 3 22 22 H 1.08997 * 109.47636 * 239.99588 * 2 1 3 23 23 H 1.09005 * 109.47213 * 119.99623 * 2 1 3 24 24 H 1.08996 * 109.47525 * 280.36372 * 4 3 2 25 25 H 1.09001 * 109.46789 * 40.36505 * 4 3 2 26 26 H 0.96995 * 120.00464 * 180.02562 * 8 7 5 27 27 H 1.09002 * 109.47406 * 173.94646 * 13 3 2 28 28 H 1.09003 * 109.46935 * 53.94750 * 13 3 2 29 29 H 1.07995 * 126.44127 * 0.04979 * 15 14 13 30 30 H 1.07997 * 125.61768 * 179.89683 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.7959 2.0224 -1.3045 5 6 1.8472 3.5203 -1.1471 6 1 2.1022 3.9544 -0.1916 7 6 1.5685 4.3364 -2.2228 8 7 1.2574 3.8078 -3.3862 9 14 1.6327 6.1931 -2.0278 10 1 3.0033 6.6759 -2.3338 11 1 0.6659 6.8227 -2.9627 12 1 1.2800 6.5568 -0.6319 13 6 3.4382 1.4418 0.3773 14 6 3.5944 1.0064 1.8114 15 6 3.8969 -0.2318 2.2356 16 8 3.9436 -0.1895 3.5817 17 6 3.6631 1.0644 3.9610 18 7 3.4554 1.7872 2.8975 19 1 -0.3633 0.5041 0.8955 20 1 -0.3633 0.5235 -0.8844 21 1 -0.3633 -1.0276 -0.0111 22 1 1.8934 -0.5139 -0.8899 23 1 1.8933 -0.5138 0.8900 24 1 2.5702 1.7036 -2.0023 25 1 0.8184 1.7307 -1.6885 26 1 1.0617 4.3819 -4.1430 27 1 3.8033 2.4628 0.2656 28 1 4.0128 0.7779 -0.2686 29 1 4.0736 -1.0974 1.6144 30 1 3.6207 1.4186 4.9804 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308386918.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:53 Heat of formation + Delta-G solvation = 27.499784 kcal Electronic energy + Delta-G solvation = -13800.274349 eV Core-core repulsion = 11404.632287 eV Total energy + Delta-G solvation = -2395.642061 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.04285 -37.10937 -34.42727 -32.58373 -30.90601 -29.66917 -27.02937 -24.85152 -22.75491 -22.29709 -21.06142 -19.69231 -17.22175 -16.52078 -16.19677 -15.09133 -14.82706 -14.57524 -13.98171 -13.78966 -13.23191 -12.89320 -12.07446 -11.69753 -11.32541 -11.14960 -11.05377 -10.78824 -10.73907 -10.53761 -10.26630 -10.12745 -9.65539 -9.21005 -8.62840 -8.36952 -7.23409 -5.97314 -3.97632 1.71464 3.00545 3.09565 3.36881 3.42670 3.49410 4.41441 4.48998 4.99179 5.21813 5.29917 5.38773 5.67749 5.79428 5.91263 6.03709 6.09650 6.21343 6.30740 6.44711 6.58776 6.66918 6.83500 7.24394 7.33781 7.88599 8.03116 8.15589 8.21814 8.58384 9.11314 9.66422 11.13335 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.035197 B = 0.008616 C = 0.007430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.338845 B = 3248.934790 C = 3767.841840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.047 3.953 3 N -0.528 5.528 4 C 0.192 3.808 5 C -0.502 4.502 6 H 0.065 0.935 7 C 0.054 3.946 8 N -0.902 5.902 9 Si 0.897 3.103 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.272 1.272 13 C 0.136 3.864 14 C 0.019 3.981 15 C -0.090 4.090 16 O -0.214 6.214 17 C 0.155 3.845 18 N -0.464 5.464 19 H 0.055 0.945 20 H 0.062 0.938 21 H 0.044 0.956 22 H 0.022 0.978 23 H 0.055 0.945 24 H -0.010 1.010 25 H 0.039 0.961 26 H 0.260 0.740 27 H 0.099 0.901 28 H 0.038 0.962 29 H 0.209 0.791 30 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.119 -8.488 10.170 13.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.081 4.081 3 N -0.253 5.253 4 C 0.067 3.933 5 C -0.541 4.541 6 H 0.083 0.917 7 C -0.147 4.147 8 N -0.542 5.542 9 Si 0.725 3.275 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.197 1.197 13 C 0.007 3.993 14 C -0.101 4.101 15 C -0.160 4.160 16 O -0.100 6.100 17 C -0.072 4.072 18 N -0.193 5.193 19 H 0.075 0.925 20 H 0.081 0.919 21 H 0.063 0.937 22 H 0.040 0.960 23 H 0.074 0.926 24 H 0.007 0.993 25 H 0.057 0.943 26 H 0.070 0.930 27 H 0.117 0.883 28 H 0.056 0.944 29 H 0.226 0.774 30 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 3.653 -7.559 10.359 13.334 hybrid contribution 0.571 -0.136 -0.579 0.825 sum 4.224 -7.695 9.779 13.141 Atomic orbital electron populations 1.21722 0.95437 0.99852 1.02949 1.22049 0.96254 0.91015 0.98801 1.62098 1.14462 1.14249 1.34512 1.19810 0.96599 0.94372 0.82485 1.21216 1.45797 0.90608 0.96455 0.91669 1.24979 0.95519 0.98963 0.95212 1.69957 1.48007 1.35210 1.01037 0.86508 0.77660 0.85319 0.78033 1.20795 1.21361 1.19702 1.20300 0.90976 1.02432 0.85547 1.21998 1.01611 0.89781 0.96759 1.24758 1.09628 1.01090 0.80562 1.84432 1.68257 1.34119 1.23208 1.28093 1.00492 0.77722 1.00881 1.70408 1.16671 1.34420 0.97817 0.92538 0.91897 0.93705 0.95967 0.92638 0.99265 0.94268 0.93019 0.88252 0.94424 0.77448 0.73942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 9.99 37.16 0.37 -2.14 16 2 C 0.05 0.87 5.55 -3.83 -0.02 0.85 16 3 N -0.53 -11.67 4.37 -237.52 -1.04 -12.71 16 4 C 0.19 5.02 4.59 -4.97 -0.02 4.99 16 5 C -0.50 -14.39 8.61 -34.44 -0.30 -14.68 16 6 H 0.07 1.90 7.66 -52.49 -0.40 1.50 16 7 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16 9 Si 0.90 22.17 29.54 -169.99 -5.02 17.15 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 13 C 0.14 2.70 5.33 -4.98 -0.03 2.67 16 14 C 0.02 0.33 5.91 -82.81 -0.49 -0.16 16 15 C -0.09 -1.26 10.66 29.35 0.31 -0.95 16 16 O -0.21 -2.88 10.78 5.33 0.06 -2.82 16 17 C 0.15 2.04 13.23 52.09 0.69 2.73 16 18 N -0.46 -8.27 11.29 -11.18 -0.13 -8.40 16 19 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 20 H 0.06 1.23 6.52 -51.93 -0.34 0.90 16 21 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 22 H 0.02 0.40 8.05 -51.93 -0.42 -0.02 16 23 H 0.06 0.92 5.82 -51.93 -0.30 0.61 16 24 H -0.01 -0.29 8.00 -51.93 -0.42 -0.70 16 25 H 0.04 1.09 6.24 -51.93 -0.32 0.76 16 26 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 27 H 0.10 2.20 7.32 -51.93 -0.38 1.82 16 28 H 0.04 0.68 8.12 -51.93 -0.42 0.26 16 29 H 0.21 2.21 8.06 -52.49 -0.42 1.79 16 30 H 0.24 1.88 8.06 -52.49 -0.42 1.46 16 LS Contribution 258.36 15.07 3.89 3.89 Total: -1.00 -32.60 258.36 -4.91 -37.51 By element: Atomic # 1 Polarization: 0.71 SS G_CDS: -3.83 Total: -3.11 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: 0.42 Total: -5.23 kcal Atomic # 7 Polarization: -46.94 SS G_CDS: -0.43 Total: -47.37 kcal Atomic # 8 Polarization: -2.88 SS G_CDS: 0.06 Total: -2.82 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -32.60 -4.91 -37.51 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308386918.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.007 kcal (2) G-P(sol) polarization free energy of solvation -32.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds