Wall clock time and date at job start Sun Mar 29 2020 21:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46896 * 109.47289 * 2 1 4 4 C 1.46906 * 110.99711 * 287.98256 * 3 2 1 5 5 C 1.50700 * 109.47118 * 160.35889 * 4 3 2 6 6 H 1.08000 * 119.99908 * 4.66676 * 5 4 3 7 7 C 1.37874 * 120.00094 * 184.66602 * 5 4 3 8 8 N 1.31519 * 120.00038 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00119 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47513 * 89.99923 * 9 7 5 11 11 H 1.48501 * 109.46817 * 210.00004 * 9 7 5 12 12 H 1.48499 * 109.47045 * 329.99550 * 9 7 5 13 13 C 1.46900 * 111.00463 * 164.03248 * 3 2 1 14 14 C 1.50694 * 109.46904 * 293.95307 * 13 3 2 15 15 C 1.34334 * 126.16849 * 94.98501 * 14 13 3 16 16 O 1.34759 * 107.11379 * 179.81181 * 15 14 13 17 17 C 1.33972 * 107.75311 * 0.35443 * 16 15 14 18 18 N 1.30252 * 108.76115 * 359.63616 * 17 16 15 19 19 H 1.08998 * 109.47102 * 299.37886 * 1 2 3 20 20 H 1.09000 * 109.46955 * 59.37843 * 1 2 3 21 21 H 1.08997 * 109.46983 * 179.37967 * 1 2 3 22 22 H 1.08997 * 109.47636 * 239.99588 * 2 1 3 23 23 H 1.09005 * 109.47213 * 119.99623 * 2 1 3 24 24 H 1.08996 * 109.47525 * 280.36372 * 4 3 2 25 25 H 1.09001 * 109.46789 * 40.36505 * 4 3 2 26 26 H 0.96995 * 120.00464 * 180.02562 * 8 7 5 27 27 H 1.09002 * 109.47406 * 173.94646 * 13 3 2 28 28 H 1.09003 * 109.46935 * 53.94750 * 13 3 2 29 29 H 1.07995 * 126.44127 * 0.04979 * 15 14 13 30 30 H 1.07997 * 125.61768 * 179.89683 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.7959 2.0224 -1.3045 5 6 1.8472 3.5203 -1.1471 6 1 2.1022 3.9544 -0.1916 7 6 1.5685 4.3364 -2.2228 8 7 1.2574 3.8078 -3.3862 9 14 1.6327 6.1931 -2.0278 10 1 3.0033 6.6759 -2.3338 11 1 0.6659 6.8227 -2.9627 12 1 1.2800 6.5568 -0.6319 13 6 3.4382 1.4418 0.3773 14 6 3.5944 1.0064 1.8114 15 6 3.8969 -0.2318 2.2356 16 8 3.9436 -0.1895 3.5817 17 6 3.6631 1.0644 3.9610 18 7 3.4554 1.7872 2.8975 19 1 -0.3633 0.5041 0.8955 20 1 -0.3633 0.5235 -0.8844 21 1 -0.3633 -1.0276 -0.0111 22 1 1.8934 -0.5139 -0.8899 23 1 1.8933 -0.5138 0.8900 24 1 2.5702 1.7036 -2.0023 25 1 0.8184 1.7307 -1.6885 26 1 1.0617 4.3819 -4.1430 27 1 3.8033 2.4628 0.2656 28 1 4.0128 0.7779 -0.2686 29 1 4.0736 -1.0974 1.6144 30 1 3.6207 1.4186 4.9804 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308386918.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:53 Heat of formation + Delta-G solvation = 1.761336 kcal Electronic energy + Delta-G solvation = -13801.390452 eV Core-core repulsion = 11404.632287 eV Total energy + Delta-G solvation = -2396.758164 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -44.16506 -38.76455 -35.68501 -34.72067 -32.26461 -31.23803 -28.86240 -26.48741 -24.49225 -23.54227 -22.38683 -21.28811 -18.59406 -18.33795 -17.48333 -16.75473 -16.35568 -15.93864 -15.69844 -15.28936 -14.72128 -14.43451 -14.03218 -13.31176 -13.05604 -12.90455 -12.64124 -12.58537 -12.40244 -12.11184 -12.01744 -11.54272 -11.36324 -11.25290 -10.59064 -9.80321 -8.98587 -8.18999 -6.27908 0.63723 1.39550 1.40740 1.53209 1.80299 2.09103 2.41328 3.11811 3.33066 3.45323 3.99922 4.10443 4.21016 4.39751 4.59734 4.65409 4.71914 4.91005 4.93518 5.01990 5.06402 5.25364 5.27104 5.36876 5.45324 5.68295 6.09927 6.37489 6.64563 6.87136 6.92945 7.40998 8.91131 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.035197 B = 0.008616 C = 0.007430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.338845 B = 3248.934790 C = 3767.841840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.047 3.953 3 N -0.543 5.543 4 C 0.208 3.792 5 C -0.520 4.520 6 H 0.052 0.948 7 C 0.004 3.996 8 N -0.933 5.933 9 Si 0.964 3.036 10 H -0.272 1.272 11 H -0.278 1.278 12 H -0.271 1.271 13 C 0.142 3.858 14 C -0.020 4.020 15 C -0.063 4.063 16 O -0.208 6.208 17 C 0.178 3.822 18 N -0.522 5.522 19 H 0.048 0.952 20 H 0.033 0.967 21 H 0.081 0.919 22 H 0.027 0.973 23 H 0.082 0.918 24 H -0.033 1.033 25 H 0.017 0.983 26 H 0.265 0.735 27 H 0.062 0.938 28 H 0.052 0.948 29 H 0.244 0.756 30 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.516 -9.350 11.854 15.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.081 4.081 3 N -0.268 5.268 4 C 0.083 3.917 5 C -0.558 4.558 6 H 0.070 0.930 7 C -0.194 4.194 8 N -0.574 5.574 9 Si 0.789 3.211 10 H -0.198 1.198 11 H -0.204 1.204 12 H -0.196 1.196 13 C 0.013 3.987 14 C -0.139 4.139 15 C -0.134 4.134 16 O -0.094 6.094 17 C -0.048 4.048 18 N -0.251 5.251 19 H 0.067 0.933 20 H 0.053 0.947 21 H 0.100 0.900 22 H 0.045 0.955 23 H 0.101 0.899 24 H -0.016 1.016 25 H 0.035 0.965 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.260 0.740 30 H 0.308 0.692 Dipole moment (debyes) X Y Z Total from point charges 4.057 -8.432 12.048 15.255 hybrid contribution 0.471 0.070 -1.021 1.127 sum 4.528 -8.362 11.027 14.561 Atomic orbital electron populations 1.21693 0.95008 1.01685 1.01090 1.22155 0.96609 0.89109 1.00224 1.61988 1.16426 1.16631 1.31732 1.19421 0.94506 0.93630 0.84182 1.21448 1.46033 0.92254 0.96061 0.92959 1.25826 0.94932 1.03839 0.94797 1.70061 1.48552 1.37004 1.01748 0.85461 0.78172 0.79447 0.78024 1.19755 1.20366 1.19565 1.20085 0.89607 1.00826 0.88134 1.21651 1.05259 0.91507 0.95486 1.25199 1.06676 1.00592 0.80926 1.84489 1.67952 1.34222 1.22730 1.29078 0.97224 0.76909 1.01628 1.70325 1.19292 1.36337 0.99173 0.93320 0.94746 0.89987 0.95453 0.89949 1.01580 0.96450 0.92662 0.91928 0.92971 0.74038 0.69221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.76 9.99 71.98 0.72 -4.04 16 2 C 0.05 1.68 5.55 86.30 0.48 2.16 16 3 N -0.54 -24.44 4.37 -905.38 -3.96 -28.39 16 4 C 0.21 11.35 4.59 85.56 0.39 11.75 16 5 C -0.52 -30.82 8.61 25.60 0.22 -30.60 16 6 H 0.05 3.17 7.66 -2.91 -0.02 3.15 16 7 C 0.00 0.23 5.46 84.65 0.46 0.69 16 8 N -0.93 -56.99 13.29 21.45 0.28 -56.70 16 9 Si 0.96 46.11 29.54 68.60 2.03 48.14 16 10 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 12 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 13 C 0.14 5.73 5.33 85.56 0.46 6.19 16 14 C -0.02 -0.69 5.91 41.26 0.24 -0.45 16 15 C -0.06 -1.57 10.66 66.93 0.71 -0.86 16 16 O -0.21 -4.83 10.78 -3.84 -0.04 -4.87 16 17 C 0.18 4.14 13.23 130.48 1.73 5.87 16 18 N -0.52 -18.02 11.29 -304.07 -3.43 -21.46 16 19 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 20 H 0.03 1.37 6.52 -2.39 -0.02 1.35 16 21 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 22 H 0.03 0.96 8.05 -2.39 -0.02 0.94 16 23 H 0.08 2.51 5.82 -2.38 -0.01 2.50 16 24 H -0.03 -1.93 8.00 -2.39 -0.02 -1.94 16 25 H 0.02 1.01 6.24 -2.39 -0.01 1.00 16 26 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 27 H 0.06 2.93 7.32 -2.39 -0.02 2.91 16 28 H 0.05 1.89 8.12 -2.39 -0.02 1.87 16 29 H 0.24 4.11 8.06 -2.91 -0.02 4.09 16 30 H 0.29 3.23 8.06 -2.91 -0.02 3.20 16 Total: -1.00 -72.68 258.36 1.41 -71.27 By element: Atomic # 1 Polarization: 0.19 SS G_CDS: 1.12 Total: 1.32 kcal Atomic # 6 Polarization: -14.71 SS G_CDS: 5.41 Total: -9.30 kcal Atomic # 7 Polarization: -99.45 SS G_CDS: -7.11 Total: -106.56 kcal Atomic # 8 Polarization: -4.83 SS G_CDS: -0.04 Total: -4.87 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -72.68 1.41 -71.27 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308386918.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.032 kcal (2) G-P(sol) polarization free energy of solvation -72.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds