Wall clock time and date at job start Sun Mar 29 2020 21:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50697 * 109.47317 * 2 1 4 4 N 1.30496 * 125.65144 * 270.17615 * 3 2 1 5 5 C 1.34126 * 109.25684 * 180.28957 * 4 3 2 6 6 C 1.34667 * 108.02237 * 359.73013 * 5 4 3 7 7 N 1.35046 * 125.65027 * 89.99846 * 3 2 1 8 8 C 1.46499 * 126.39791 * 359.97438 * 7 3 2 9 9 C 1.53008 * 109.47013 * 84.70927 * 8 7 3 10 10 H 1.08996 * 109.46961 * 55.00672 * 9 8 7 11 11 O 1.42893 * 109.47546 * 294.99971 * 9 8 7 12 12 C 1.50706 * 109.46847 * 175.00065 * 9 8 7 13 13 H 1.08005 * 120.00138 * 0.02562 * 12 9 8 14 14 C 1.37871 * 119.99722 * 180.02562 * 12 9 8 15 15 N 1.31516 * 120.00217 * 0.02562 * 14 12 9 16 16 Si 1.86800 * 120.00073 * 179.97438 * 14 12 9 17 17 H 1.48503 * 109.46845 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.47399 * 119.99815 * 16 14 12 19 19 H 1.48498 * 109.47295 * 240.00422 * 16 14 12 20 20 H 1.08995 * 109.46955 * 299.99940 * 1 2 3 21 21 H 1.08998 * 109.46753 * 59.99801 * 1 2 3 22 22 H 1.08998 * 109.47133 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47354 * 239.99849 * 2 1 3 24 24 H 1.09003 * 109.47159 * 120.00423 * 2 1 3 25 25 H 1.08000 * 125.99294 * 179.72444 * 5 4 3 26 26 H 1.07997 * 126.59626 * 179.97438 * 6 5 4 27 27 H 1.09003 * 109.47208 * 324.71652 * 8 7 3 28 28 H 1.08997 * 109.47340 * 204.71388 * 8 7 3 29 29 H 0.96702 * 114.00232 * 300.00622 * 11 9 8 30 30 H 0.97000 * 119.99651 * 0.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2829 2.1389 -1.0604 5 6 2.7190 3.3495 -0.6818 6 6 2.7338 3.3849 0.6643 7 7 2.2948 2.1629 1.0974 8 6 2.1437 1.7373 2.4910 9 6 3.4030 0.9906 2.9356 10 1 4.2771 1.6190 2.7655 11 8 3.5310 -0.2175 2.1833 12 6 3.2996 0.6603 4.4024 13 1 2.4232 0.9534 4.9615 14 6 4.3238 -0.0159 5.0306 15 7 5.3912 -0.3723 4.3499 16 14 4.1961 -0.4246 6.8488 17 1 2.9057 0.0826 7.3807 18 1 4.2615 -1.8969 7.0311 19 1 5.3191 0.2152 7.5801 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5139 0.8900 25 1 3.0077 4.1549 -1.3410 26 1 3.0346 4.2172 1.2832 27 1 1.2804 1.0776 2.5780 28 1 1.9975 2.6123 3.1243 29 1 2.7868 -0.8262 2.2869 30 1 5.4580 -0.1590 3.4060 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308400677.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:30 Heat of formation + Delta-G solvation = -29.242415 kcal Electronic energy + Delta-G solvation = -14152.575529 eV Core-core repulsion = 11754.472941 eV Total energy + Delta-G solvation = -2398.102588 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.02650 -38.48303 -34.77642 -34.63958 -34.24475 -30.30324 -29.43284 -26.56985 -24.62752 -23.68723 -22.21015 -20.49061 -19.58076 -18.20835 -16.96981 -16.16938 -16.14270 -15.64302 -15.52835 -15.02137 -14.57198 -14.47895 -14.32774 -13.79483 -13.23157 -13.07376 -12.64778 -12.41519 -12.32555 -12.05998 -11.91174 -11.55193 -10.98021 -10.72818 -10.69416 -10.03444 -9.25607 -8.67053 -6.55099 1.15786 1.54906 1.62289 1.77971 1.95745 2.18921 2.54675 3.11256 3.55372 3.64040 3.86024 3.99191 4.14789 4.27345 4.38984 4.44729 4.56007 4.71305 4.76992 4.99540 5.08786 5.15468 5.27957 5.52757 5.67214 5.87654 6.06007 6.31279 6.47520 7.04205 7.17760 7.41883 8.70447 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.044547 B = 0.008854 C = 0.008235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.394853 B = 3161.744474 C = 3399.436190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.045 4.045 3 C 0.207 3.793 4 N -0.534 5.534 5 C -0.051 4.051 6 C -0.075 4.075 7 N -0.447 5.447 8 C 0.094 3.906 9 C 0.208 3.792 10 H 0.016 0.984 11 O -0.583 6.583 12 C -0.657 4.657 13 H 0.065 0.935 14 C -0.014 4.014 15 N -0.919 5.919 16 Si 1.121 2.879 17 H -0.264 1.264 18 H -0.281 1.281 19 H -0.284 1.284 20 H 0.049 0.951 21 H 0.054 0.946 22 H 0.088 0.912 23 H 0.089 0.911 24 H 0.087 0.913 25 H 0.189 0.811 26 H 0.191 0.809 27 H 0.101 0.899 28 H 0.100 0.900 29 H 0.365 0.635 30 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.383 2.961 -3.119 10.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.084 4.084 3 C -0.055 4.055 4 N -0.254 5.254 5 C -0.199 4.199 6 C -0.208 4.208 7 N -0.127 5.127 8 C -0.028 4.028 9 C 0.150 3.850 10 H 0.033 0.967 11 O -0.390 6.390 12 C -0.694 4.694 13 H 0.083 0.917 14 C -0.217 4.217 15 N -0.554 5.554 16 Si 0.943 3.057 17 H -0.189 1.189 18 H -0.207 1.207 19 H -0.210 1.210 20 H 0.068 0.932 21 H 0.073 0.927 22 H 0.107 0.893 23 H 0.107 0.893 24 H 0.106 0.894 25 H 0.206 0.794 26 H 0.208 0.792 27 H 0.119 0.881 28 H 0.119 0.881 29 H 0.214 0.786 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.161 2.247 -2.728 8.893 hybrid contribution -0.661 1.092 -0.412 1.341 sum -8.822 3.339 -3.140 9.941 Atomic orbital electron populations 1.21680 0.92566 1.03416 1.01676 1.20209 0.97246 0.86434 1.04533 1.23655 1.03284 0.97277 0.81332 1.70159 1.20538 1.05287 1.29416 1.22646 1.07216 0.96668 0.93340 1.23157 1.09524 0.90895 0.97259 1.45643 1.47373 1.11704 1.08018 1.22668 1.00785 1.01543 0.77836 1.19672 0.91751 0.83190 0.90381 0.96660 1.86567 1.49152 1.32059 1.71264 1.22711 1.07874 1.43525 0.95323 0.91718 1.27298 0.91690 0.92698 1.10011 1.70737 1.29699 1.43636 1.11369 0.82888 0.76591 0.76814 0.69403 1.18864 1.20739 1.21030 0.93221 0.92732 0.89329 0.89284 0.89437 0.79370 0.79239 0.88104 0.88129 0.78631 0.92225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.26 9.90 71.98 0.71 -2.54 16 2 C -0.05 -1.38 5.97 29.85 0.18 -1.21 16 3 C 0.21 7.69 6.84 138.13 0.94 8.63 16 4 N -0.53 -20.78 11.25 -188.14 -2.12 -22.89 16 5 C -0.05 -1.76 11.87 83.52 0.99 -0.77 16 6 C -0.07 -2.55 11.58 83.09 0.96 -1.59 16 7 N -0.45 -16.46 2.73 -514.28 -1.40 -17.86 16 8 C 0.09 3.45 5.34 86.38 0.46 3.91 16 9 C 0.21 9.76 2.67 29.85 0.08 9.84 16 10 H 0.02 0.85 8.01 -2.39 -0.02 0.83 16 11 O -0.58 -27.39 10.28 -148.98 -1.53 -28.92 16 12 C -0.66 -33.25 8.76 25.60 0.22 -33.02 16 13 H 0.06 3.10 7.74 -2.91 -0.02 3.08 16 14 C -0.01 -0.76 5.40 84.65 0.46 -0.31 16 15 N -0.92 -54.76 13.53 21.45 0.29 -54.47 16 16 Si 1.12 46.78 29.90 68.60 2.05 48.83 16 17 H -0.26 -9.89 7.11 99.48 0.71 -9.19 16 18 H -0.28 -11.53 7.11 99.48 0.71 -10.83 16 19 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 20 H 0.05 1.19 8.14 -2.39 -0.02 1.18 16 21 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 22 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 23 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 24 H 0.09 2.72 4.41 -2.39 -0.01 2.71 16 25 H 0.19 5.14 8.06 -2.91 -0.02 5.12 16 26 H 0.19 5.29 8.06 -2.91 -0.02 5.27 16 27 H 0.10 3.34 7.94 -2.39 -0.02 3.32 16 28 H 0.10 3.45 8.14 -2.39 -0.02 3.43 16 29 H 0.37 14.79 7.22 -74.06 -0.53 14.25 16 30 H 0.27 16.59 6.47 -92.71 -0.60 15.99 16 Total: -1.00 -65.72 255.94 3.07 -62.65 By element: Atomic # 1 Polarization: 28.94 SS G_CDS: 0.77 Total: 29.72 kcal Atomic # 6 Polarization: -22.06 SS G_CDS: 5.01 Total: -17.05 kcal Atomic # 7 Polarization: -91.99 SS G_CDS: -3.23 Total: -95.22 kcal Atomic # 8 Polarization: -27.39 SS G_CDS: -1.53 Total: -28.92 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.05 Total: 48.83 kcal Total: -65.72 3.07 -62.65 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308400677.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.408 kcal (2) G-P(sol) polarization free energy of solvation -65.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds