Wall clock time and date at job start Sun Mar 29 2020 21:27:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46497 * 1
3 3 C 1.37098 * 120.00165 * 2 1
4 4 H 1.07997 * 120.00462 * 142.82186 * 3 2 1
5 5 C 1.38956 * 119.99927 * 322.83309 * 3 2 1
6 6 N 1.31407 * 119.99949 * 158.40160 * 5 3 2
7 7 Si 1.86802 * 119.99946 * 338.40102 * 5 3 2
8 8 H 1.48501 * 109.47045 * 95.72389 * 7 5 3
9 9 H 1.48496 * 109.47131 * 215.72318 * 7 5 3
10 10 H 1.48506 * 109.46896 * 335.72199 * 7 5 3
11 11 C 1.34774 * 120.00047 * 180.02562 * 2 1 3
12 12 O 1.21302 * 119.99850 * 179.97438 * 11 2 1
13 13 C 1.50699 * 120.00212 * 359.97438 * 11 2 1
14 14 N 1.46498 * 109.47074 * 180.02562 * 13 11 2
15 15 N 1.28606 * 124.61780 * 269.69912 * 14 13 11
16 16 C 1.31376 * 108.71959 * 180.26855 * 15 14 13
17 17 C 1.39683 * 105.89815 * 0.02562 * 16 15 14
18 18 N 1.28593 * 124.62214 * 90.00401 * 14 13 11
19 19 H 1.09000 * 109.47006 * 265.13226 * 1 2 3
20 20 H 1.09005 * 109.47116 * 25.13285 * 1 2 3
21 21 H 1.09007 * 109.46951 * 145.12896 * 1 2 3
22 22 H 0.96998 * 120.00150 * 179.97438 * 6 5 3
23 23 H 1.09007 * 109.46816 * 60.00790 * 13 11 2
24 24 H 1.08997 * 109.47476 * 300.00564 * 13 11 2
25 25 H 1.07993 * 127.05024 * 180.02562 * 16 15 14
26 26 H 1.08002 * 127.04459 * 180.02562 * 17 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1505 1.1873 0.0000
4 1 3.0659 1.2824 0.5652
5 6 1.6674 2.2685 -0.7270
6 7 2.0431 3.4890 -0.4173
7 14 0.4839 1.9868 -2.1446
8 1 -0.9113 2.1587 -1.6661
9 1 0.7616 2.9685 -3.2237
10 1 0.6608 0.6095 -2.6708
11 6 2.1388 -1.1672 -0.0005
12 8 3.3519 -1.1671 -0.0010
13 6 1.3854 -2.4723 -0.0005
14 7 2.3375 -3.5857 -0.0005
15 7 2.8080 -4.1447 -1.0589
16 6 3.6262 -5.1075 -0.6990
17 6 3.6284 -5.1056 0.6978
18 7 2.8122 -4.1411 1.0577
19 1 -0.3633 -0.0872 1.0240
20 1 -0.3633 0.9304 -0.4365
21 1 -0.3633 -0.8432 -0.5876
22 1 1.7062 4.2437 -0.9251
23 1 0.7585 -2.5299 -0.8904
24 1 0.7590 -2.5303 0.8896
25 1 4.1828 -5.7656 -1.3497
26 1 4.1876 -5.7617 1.3485
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000308402704.mol2 26
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:27:17
Heat of formation + Delta-G solvation = 99.809285 kcal
Electronic energy + Delta-G solvation = -13707.722056 eV
Core-core repulsion = 11211.675226 eV
Total energy + Delta-G solvation = -2496.046830 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 210.086 amu
Computer time = 0.15 seconds
Orbital eigenvalues (eV)
-43.18696 -38.82260 -35.04274 -33.29116 -32.12798 -32.07397 -28.32385 -26.56959
-24.75064 -22.56135 -21.61077 -19.27873 -17.30281 -17.08623 -16.66583 -15.79661
-15.25674 -14.98894 -14.40225 -14.17198 -13.40485 -12.85050 -12.75575 -12.48423
-11.89115 -11.76688 -11.33048 -10.87477 -10.48963 -10.46688 -10.02930 -9.99118
-9.46137 -9.15784 -8.55347 -7.91154 -6.50183 -4.09035 2.14470 2.58960
2.79415 2.93935 3.14064 3.18771 3.45952 4.03853 4.23855 4.48895
4.83329 5.15965 5.19026 5.26929 5.40128 5.56748 5.62638 5.94898
6.13825 6.30497 6.45964 6.95256 7.39748 8.11275 8.33956 8.67584
8.80171 9.16023 9.53649 10.61296
Molecular weight = 210.09amu
Principal moments of inertia in cm(-1)
A = 0.060431 B = 0.008659 C = 0.008400
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 463.230707 B = 3232.968291 C = 3332.671373
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.056 3.944
2 N -0.460 5.460
3 C -0.319 4.319
4 H 0.107 0.893
5 C 0.061 3.939
6 N -0.858 5.858
7 Si 0.881 3.119
8 H -0.273 1.273
9 H -0.285 1.285
10 H -0.264 1.264
11 C 0.447 3.553
12 O -0.548 6.548
13 C 0.121 3.879
14 N -0.129 5.129
15 N -0.281 5.281
16 C -0.036 4.036
17 C -0.036 4.036
18 N -0.281 5.281
19 H 0.059 0.941
20 H 0.071 0.929
21 H 0.055 0.945
22 H 0.276 0.724
23 H 0.124 0.876
24 H 0.124 0.876
25 H 0.194 0.806
26 H 0.194 0.806
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.067 -12.682 -0.420 13.664
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.087 4.087
2 N -0.183 5.183
3 C -0.446 4.446
4 H 0.125 0.875
5 C -0.145 4.145
6 N -0.493 5.493
7 Si 0.708 3.292
8 H -0.200 1.200
9 H -0.212 1.212
10 H -0.188 1.188
11 C 0.232 3.768
12 O -0.428 6.428
13 C -0.003 4.003
14 N -0.030 5.030
15 N -0.122 5.122
16 C -0.219 4.219
17 C -0.219 4.219
18 N -0.122 5.122
19 H 0.077 0.923
20 H 0.090 0.910
21 H 0.074 0.926
22 H 0.087 0.913
23 H 0.142 0.858
24 H 0.142 0.858
25 H 0.210 0.790
26 H 0.211 0.789
Dipole moment (debyes) X Y Z Total
from point charges -5.357 -11.378 -0.450 12.584
hybrid contribution -0.008 -0.621 -0.791 1.005
sum -5.365 -11.998 -1.240 13.202
Atomic orbital electron populations
1.22130 0.82995 1.02100 1.01502 1.43604 1.04185 1.05215 1.65303
1.19056 1.10538 0.84878 1.30093 0.87528 1.25379 0.97489 0.94697
0.96985 1.69739 1.43390 0.98142 1.38077 0.86916 0.80108 0.79258
0.82950 1.20028 1.21181 1.18779 1.20093 0.88538 0.84317 0.83810
1.90644 1.13339 1.86210 1.52582 1.21918 0.89089 0.82862 1.06433
1.47441 1.31907 1.24430 0.99202 1.74018 1.12807 1.09110 1.16288
1.24682 1.02106 0.99753 0.95318 1.24682 1.02159 0.99723 0.95307
1.74000 1.12729 1.09185 1.16288 0.92260 0.91044 0.92638 0.91341
0.85778 0.85828 0.78954 0.78942
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.06 1.02 8.78 59.85 0.53 1.54 15
2 N -0.46 -10.92 2.59 -122.19 -0.32 -11.24 15
3 C -0.32 -8.98 9.37 -14.93 -0.14 -9.12 15
4 H 0.11 3.41 7.90 -52.49 -0.41 3.00 15
5 C 0.06 1.67 5.29 -17.47 -0.09 1.58 15
6 N -0.86 -24.49 13.96 55.50 0.77 -23.71 15
7 Si 0.88 19.95 24.96 -169.99 -4.24 15.71 15
8 H -0.27 -5.64 6.69 56.52 0.38 -5.26 15
9 H -0.29 -6.54 7.11 56.52 0.40 -6.14 15
10 H -0.26 -5.91 7.11 56.52 0.40 -5.51 15
11 C 0.45 10.48 7.70 -10.99 -0.08 10.39 15
12 O -0.55 -15.53 16.30 5.54 0.09 -15.44 15
13 C 0.12 2.12 5.64 -5.20 -0.03 2.10 15
14 N -0.13 -2.46 3.44 -11.66 -0.04 -2.50 15
15 N -0.28 -5.22 12.05 30.67 0.37 -4.85 15
16 C -0.04 -0.54 12.20 -17.21 -0.21 -0.75 15
17 C -0.04 -0.53 12.20 -17.21 -0.21 -0.74 15
18 N -0.28 -5.16 12.05 30.68 0.37 -4.79 15
19 H 0.06 0.92 8.14 -51.93 -0.42 0.49 15
20 H 0.07 1.39 3.42 -51.93 -0.18 1.21 15
21 H 0.05 0.79 6.64 -51.93 -0.34 0.44 15
22 H 0.28 7.24 8.31 -40.82 -0.34 6.90 15
23 H 0.12 1.81 7.41 -51.92 -0.38 1.42 15
24 H 0.12 1.74 8.11 -51.93 -0.42 1.32 15
25 H 0.19 1.97 8.06 -52.49 -0.42 1.55 15
26 H 0.19 1.95 8.06 -52.49 -0.42 1.53 15
LS Contribution 233.47 15.07 3.52 3.52
Total: -1.00 -35.47 233.47 -1.89 -37.36
By element:
Atomic # 1 Polarization: 3.12 SS G_CDS: -2.17 Total: 0.95 kcal
Atomic # 6 Polarization: 5.24 SS G_CDS: -0.24 Total: 5.00 kcal
Atomic # 7 Polarization: -48.25 SS G_CDS: 1.16 Total: -47.10 kcal
Atomic # 8 Polarization: -15.53 SS G_CDS: 0.09 Total: -15.44 kcal
Atomic # 14 Polarization: 19.95 SS G_CDS: -4.24 Total: 15.71 kcal
Total LS contribution 3.52 Total: 3.52 kcal
Total: -35.47 -1.89 -37.36 kcal
The number of atoms in the molecule is 26
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000308402704.mol2 26
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 137.170 kcal
(2) G-P(sol) polarization free energy of solvation -35.474 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.696 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.887 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.361 kcal
(6) G-S(sol) free energy of system = (1) + (5) 99.809 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.15 seconds