Wall clock time and date at job start Sun Mar 29 2020 21:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.37098 * 120.00165 * 2 1 4 4 H 1.07997 * 120.00462 * 142.82186 * 3 2 1 5 5 C 1.38956 * 119.99927 * 322.83309 * 3 2 1 6 6 N 1.31407 * 119.99949 * 158.40160 * 5 3 2 7 7 Si 1.86802 * 119.99946 * 338.40102 * 5 3 2 8 8 H 1.48501 * 109.47045 * 95.72389 * 7 5 3 9 9 H 1.48496 * 109.47131 * 215.72318 * 7 5 3 10 10 H 1.48506 * 109.46896 * 335.72199 * 7 5 3 11 11 C 1.34774 * 120.00047 * 180.02562 * 2 1 3 12 12 O 1.21302 * 119.99850 * 179.97438 * 11 2 1 13 13 C 1.50699 * 120.00212 * 359.97438 * 11 2 1 14 14 N 1.46498 * 109.47074 * 180.02562 * 13 11 2 15 15 N 1.28606 * 124.61780 * 269.69912 * 14 13 11 16 16 C 1.31376 * 108.71959 * 180.26855 * 15 14 13 17 17 C 1.39683 * 105.89815 * 0.02562 * 16 15 14 18 18 N 1.28593 * 124.62214 * 90.00401 * 14 13 11 19 19 H 1.09000 * 109.47006 * 265.13226 * 1 2 3 20 20 H 1.09005 * 109.47116 * 25.13285 * 1 2 3 21 21 H 1.09007 * 109.46951 * 145.12896 * 1 2 3 22 22 H 0.96998 * 120.00150 * 179.97438 * 6 5 3 23 23 H 1.09007 * 109.46816 * 60.00790 * 13 11 2 24 24 H 1.08997 * 109.47476 * 300.00564 * 13 11 2 25 25 H 1.07993 * 127.05024 * 180.02562 * 16 15 14 26 26 H 1.08002 * 127.04459 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.0659 1.2824 0.5652 5 6 1.6674 2.2685 -0.7270 6 7 2.0431 3.4890 -0.4173 7 14 0.4839 1.9868 -2.1446 8 1 -0.9113 2.1587 -1.6661 9 1 0.7616 2.9685 -3.2237 10 1 0.6608 0.6095 -2.6708 11 6 2.1388 -1.1672 -0.0005 12 8 3.3519 -1.1671 -0.0010 13 6 1.3854 -2.4723 -0.0005 14 7 2.3375 -3.5857 -0.0005 15 7 2.8080 -4.1447 -1.0589 16 6 3.6262 -5.1075 -0.6990 17 6 3.6284 -5.1056 0.6978 18 7 2.8122 -4.1411 1.0577 19 1 -0.3633 -0.0872 1.0240 20 1 -0.3633 0.9304 -0.4365 21 1 -0.3633 -0.8432 -0.5876 22 1 1.7062 4.2437 -0.9251 23 1 0.7585 -2.5299 -0.8904 24 1 0.7590 -2.5303 0.8896 25 1 4.1828 -5.7656 -1.3497 26 1 4.1876 -5.7617 1.3485 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308402704.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:17 Heat of formation + Delta-G solvation = 99.809285 kcal Electronic energy + Delta-G solvation = -13707.722056 eV Core-core repulsion = 11211.675226 eV Total energy + Delta-G solvation = -2496.046830 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.18696 -38.82260 -35.04274 -33.29116 -32.12798 -32.07397 -28.32385 -26.56959 -24.75064 -22.56135 -21.61077 -19.27873 -17.30281 -17.08623 -16.66583 -15.79661 -15.25674 -14.98894 -14.40225 -14.17198 -13.40485 -12.85050 -12.75575 -12.48423 -11.89115 -11.76688 -11.33048 -10.87477 -10.48963 -10.46688 -10.02930 -9.99118 -9.46137 -9.15784 -8.55347 -7.91154 -6.50183 -4.09035 2.14470 2.58960 2.79415 2.93935 3.14064 3.18771 3.45952 4.03853 4.23855 4.48895 4.83329 5.15965 5.19026 5.26929 5.40128 5.56748 5.62638 5.94898 6.13825 6.30497 6.45964 6.95256 7.39748 8.11275 8.33956 8.67584 8.80171 9.16023 9.53649 10.61296 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.060431 B = 0.008659 C = 0.008400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 463.230707 B = 3232.968291 C = 3332.671373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.460 5.460 3 C -0.319 4.319 4 H 0.107 0.893 5 C 0.061 3.939 6 N -0.858 5.858 7 Si 0.881 3.119 8 H -0.273 1.273 9 H -0.285 1.285 10 H -0.264 1.264 11 C 0.447 3.553 12 O -0.548 6.548 13 C 0.121 3.879 14 N -0.129 5.129 15 N -0.281 5.281 16 C -0.036 4.036 17 C -0.036 4.036 18 N -0.281 5.281 19 H 0.059 0.941 20 H 0.071 0.929 21 H 0.055 0.945 22 H 0.276 0.724 23 H 0.124 0.876 24 H 0.124 0.876 25 H 0.194 0.806 26 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.067 -12.682 -0.420 13.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.183 5.183 3 C -0.446 4.446 4 H 0.125 0.875 5 C -0.145 4.145 6 N -0.493 5.493 7 Si 0.708 3.292 8 H -0.200 1.200 9 H -0.212 1.212 10 H -0.188 1.188 11 C 0.232 3.768 12 O -0.428 6.428 13 C -0.003 4.003 14 N -0.030 5.030 15 N -0.122 5.122 16 C -0.219 4.219 17 C -0.219 4.219 18 N -0.122 5.122 19 H 0.077 0.923 20 H 0.090 0.910 21 H 0.074 0.926 22 H 0.087 0.913 23 H 0.142 0.858 24 H 0.142 0.858 25 H 0.210 0.790 26 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -5.357 -11.378 -0.450 12.584 hybrid contribution -0.008 -0.621 -0.791 1.005 sum -5.365 -11.998 -1.240 13.202 Atomic orbital electron populations 1.22130 0.82995 1.02100 1.01502 1.43604 1.04185 1.05215 1.65303 1.19056 1.10538 0.84878 1.30093 0.87528 1.25379 0.97489 0.94697 0.96985 1.69739 1.43390 0.98142 1.38077 0.86916 0.80108 0.79258 0.82950 1.20028 1.21181 1.18779 1.20093 0.88538 0.84317 0.83810 1.90644 1.13339 1.86210 1.52582 1.21918 0.89089 0.82862 1.06433 1.47441 1.31907 1.24430 0.99202 1.74018 1.12807 1.09110 1.16288 1.24682 1.02106 0.99753 0.95318 1.24682 1.02159 0.99723 0.95307 1.74000 1.12729 1.09185 1.16288 0.92260 0.91044 0.92638 0.91341 0.85778 0.85828 0.78954 0.78942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.02 8.78 59.85 0.53 1.54 15 2 N -0.46 -10.92 2.59 -122.19 -0.32 -11.24 15 3 C -0.32 -8.98 9.37 -14.93 -0.14 -9.12 15 4 H 0.11 3.41 7.90 -52.49 -0.41 3.00 15 5 C 0.06 1.67 5.29 -17.47 -0.09 1.58 15 6 N -0.86 -24.49 13.96 55.50 0.77 -23.71 15 7 Si 0.88 19.95 24.96 -169.99 -4.24 15.71 15 8 H -0.27 -5.64 6.69 56.52 0.38 -5.26 15 9 H -0.29 -6.54 7.11 56.52 0.40 -6.14 15 10 H -0.26 -5.91 7.11 56.52 0.40 -5.51 15 11 C 0.45 10.48 7.70 -10.99 -0.08 10.39 15 12 O -0.55 -15.53 16.30 5.54 0.09 -15.44 15 13 C 0.12 2.12 5.64 -5.20 -0.03 2.10 15 14 N -0.13 -2.46 3.44 -11.66 -0.04 -2.50 15 15 N -0.28 -5.22 12.05 30.67 0.37 -4.85 15 16 C -0.04 -0.54 12.20 -17.21 -0.21 -0.75 15 17 C -0.04 -0.53 12.20 -17.21 -0.21 -0.74 15 18 N -0.28 -5.16 12.05 30.68 0.37 -4.79 15 19 H 0.06 0.92 8.14 -51.93 -0.42 0.49 15 20 H 0.07 1.39 3.42 -51.93 -0.18 1.21 15 21 H 0.05 0.79 6.64 -51.93 -0.34 0.44 15 22 H 0.28 7.24 8.31 -40.82 -0.34 6.90 15 23 H 0.12 1.81 7.41 -51.92 -0.38 1.42 15 24 H 0.12 1.74 8.11 -51.93 -0.42 1.32 15 25 H 0.19 1.97 8.06 -52.49 -0.42 1.55 15 26 H 0.19 1.95 8.06 -52.49 -0.42 1.53 15 LS Contribution 233.47 15.07 3.52 3.52 Total: -1.00 -35.47 233.47 -1.89 -37.36 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: -2.17 Total: 0.95 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: -0.24 Total: 5.00 kcal Atomic # 7 Polarization: -48.25 SS G_CDS: 1.16 Total: -47.10 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: 0.09 Total: -15.44 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -4.24 Total: 15.71 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -35.47 -1.89 -37.36 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308402704.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.170 kcal (2) G-P(sol) polarization free energy of solvation -35.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds