Wall clock time and date at job start Sun Mar 29 2020 21:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.37098 * 120.00165 * 2 1 4 4 H 1.07997 * 120.00462 * 142.82186 * 3 2 1 5 5 C 1.38956 * 119.99927 * 322.83309 * 3 2 1 6 6 N 1.31407 * 119.99949 * 158.40160 * 5 3 2 7 7 Si 1.86802 * 119.99946 * 338.40102 * 5 3 2 8 8 H 1.48501 * 109.47045 * 95.72389 * 7 5 3 9 9 H 1.48496 * 109.47131 * 215.72318 * 7 5 3 10 10 H 1.48506 * 109.46896 * 335.72199 * 7 5 3 11 11 C 1.34774 * 120.00047 * 180.02562 * 2 1 3 12 12 O 1.21302 * 119.99850 * 179.97438 * 11 2 1 13 13 C 1.50699 * 120.00212 * 359.97438 * 11 2 1 14 14 N 1.46498 * 109.47074 * 180.02562 * 13 11 2 15 15 N 1.28606 * 124.61780 * 269.69912 * 14 13 11 16 16 C 1.31376 * 108.71959 * 180.26855 * 15 14 13 17 17 C 1.39683 * 105.89815 * 0.02562 * 16 15 14 18 18 N 1.28593 * 124.62214 * 90.00401 * 14 13 11 19 19 H 1.09000 * 109.47006 * 265.13226 * 1 2 3 20 20 H 1.09005 * 109.47116 * 25.13285 * 1 2 3 21 21 H 1.09007 * 109.46951 * 145.12896 * 1 2 3 22 22 H 0.96998 * 120.00150 * 179.97438 * 6 5 3 23 23 H 1.09007 * 109.46816 * 60.00790 * 13 11 2 24 24 H 1.08997 * 109.47476 * 300.00564 * 13 11 2 25 25 H 1.07993 * 127.05024 * 180.02562 * 16 15 14 26 26 H 1.08002 * 127.04459 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.0659 1.2824 0.5652 5 6 1.6674 2.2685 -0.7270 6 7 2.0431 3.4890 -0.4173 7 14 0.4839 1.9868 -2.1446 8 1 -0.9113 2.1587 -1.6661 9 1 0.7616 2.9685 -3.2237 10 1 0.6608 0.6095 -2.6708 11 6 2.1388 -1.1672 -0.0005 12 8 3.3519 -1.1671 -0.0010 13 6 1.3854 -2.4723 -0.0005 14 7 2.3375 -3.5857 -0.0005 15 7 2.8080 -4.1447 -1.0589 16 6 3.6262 -5.1075 -0.6990 17 6 3.6284 -5.1056 0.6978 18 7 2.8122 -4.1411 1.0577 19 1 -0.3633 -0.0872 1.0240 20 1 -0.3633 0.9304 -0.4365 21 1 -0.3633 -0.8432 -0.5876 22 1 1.7062 4.2437 -0.9251 23 1 0.7585 -2.5299 -0.8904 24 1 0.7590 -2.5303 0.8896 25 1 4.1828 -5.7656 -1.3497 26 1 4.1876 -5.7617 1.3485 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308402704.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:17 Heat of formation + Delta-G solvation = 70.664903 kcal Electronic energy + Delta-G solvation = -13708.985851 eV Core-core repulsion = 11211.675226 eV Total energy + Delta-G solvation = -2497.310625 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -44.41410 -40.61895 -36.91458 -34.72458 -34.08792 -33.33105 -29.79325 -28.14002 -26.58746 -23.74736 -23.03172 -20.94821 -19.20065 -18.58768 -18.16351 -17.54774 -16.70978 -16.49106 -15.75649 -15.57222 -15.02372 -14.61971 -14.32462 -14.20163 -13.53841 -13.31475 -12.68871 -12.50976 -12.30362 -11.86471 -11.74256 -11.28801 -11.20472 -10.88494 -10.10422 -9.83464 -8.58078 -6.23859 0.85310 1.18114 1.31322 1.37153 1.45421 1.68187 1.72570 2.13950 2.59122 2.85932 3.37915 3.65837 3.95831 4.06906 4.20962 4.29119 4.56691 4.62780 4.80208 5.15191 5.41474 5.42040 5.72213 5.93629 6.42482 6.81025 7.13795 7.44945 7.66137 8.59004 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.060431 B = 0.008659 C = 0.008400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 463.230707 B = 3232.968291 C = 3332.671373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.470 5.470 3 C -0.343 4.343 4 H 0.039 0.961 5 C 0.013 3.987 6 N -0.907 5.907 7 Si 0.958 3.042 8 H -0.230 1.230 9 H -0.291 1.291 10 H -0.256 1.256 11 C 0.439 3.561 12 O -0.613 6.613 13 C 0.132 3.868 14 N -0.154 5.154 15 N -0.317 5.317 16 C -0.028 4.028 17 C -0.028 4.028 18 N -0.316 5.316 19 H 0.087 0.913 20 H 0.061 0.939 21 H 0.105 0.895 22 H 0.283 0.717 23 H 0.159 0.841 24 H 0.160 0.840 25 H 0.235 0.765 26 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.418 -15.037 -1.498 16.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 N -0.192 5.192 3 C -0.471 4.471 4 H 0.057 0.943 5 C -0.190 4.190 6 N -0.544 5.544 7 Si 0.780 3.220 8 H -0.154 1.154 9 H -0.218 1.218 10 H -0.179 1.179 11 C 0.227 3.773 12 O -0.497 6.497 13 C 0.008 3.992 14 N -0.054 5.054 15 N -0.158 5.158 16 C -0.211 4.211 17 C -0.211 4.211 18 N -0.157 5.157 19 H 0.105 0.895 20 H 0.079 0.921 21 H 0.124 0.876 22 H 0.093 0.907 23 H 0.177 0.823 24 H 0.178 0.822 25 H 0.252 0.748 26 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -7.769 -13.727 -1.502 15.845 hybrid contribution 0.891 0.037 -0.364 0.963 sum -6.878 -13.691 -1.866 15.434 Atomic orbital electron populations 1.22470 0.79042 1.03669 1.04390 1.43729 1.06553 1.03888 1.65042 1.18618 1.09720 0.87736 1.31014 0.94318 1.26262 0.99923 0.93614 0.99224 1.69862 1.45642 0.99406 1.39499 0.85721 0.79411 0.79091 0.77785 1.15381 1.21820 1.17943 1.21154 0.88212 0.86279 0.81622 1.90595 1.16534 1.87581 1.55036 1.21944 0.88352 0.79065 1.09812 1.47541 1.33248 1.25250 0.99315 1.73974 1.14334 1.10529 1.16946 1.25492 1.00658 0.98794 0.96127 1.25495 1.00729 0.98763 0.96116 1.73964 1.14214 1.10570 1.16932 0.89454 0.92051 0.87621 0.90717 0.82313 0.82231 0.74838 0.74825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.49 8.78 127.77 1.12 2.61 15 2 N -0.47 -22.20 2.59 -658.87 -1.70 -23.90 15 3 C -0.34 -20.25 9.37 84.04 0.79 -19.46 15 4 H 0.04 2.73 7.90 -2.91 -0.02 2.71 15 5 C 0.01 0.70 5.29 84.93 0.45 1.15 15 6 N -0.91 -53.70 13.96 21.66 0.30 -53.40 15 7 Si 0.96 40.29 24.96 68.60 1.71 42.00 15 8 H -0.23 -8.07 6.69 99.48 0.67 -7.40 15 9 H -0.29 -12.44 7.11 99.48 0.71 -11.73 15 10 H -0.26 -10.36 7.11 99.48 0.71 -9.65 15 11 C 0.44 20.62 7.70 87.66 0.67 21.30 15 12 O -0.61 -36.22 16.30 -3.10 -0.05 -36.27 15 13 C 0.13 4.29 5.64 85.63 0.48 4.77 15 14 N -0.15 -5.59 3.44 -190.80 -0.66 -6.25 15 15 N -0.32 -11.18 12.05 -56.87 -0.69 -11.86 15 16 C -0.03 -0.74 12.20 85.11 1.04 0.29 15 17 C -0.03 -0.75 12.20 85.11 1.04 0.29 15 18 N -0.32 -11.10 12.05 -56.86 -0.69 -11.79 15 19 H 0.09 2.37 8.14 -2.39 -0.02 2.35 15 20 H 0.06 2.14 3.42 -2.38 -0.01 2.13 15 21 H 0.11 2.39 6.64 -2.38 -0.02 2.38 15 22 H 0.28 15.21 8.31 -92.71 -0.77 14.44 15 23 H 0.16 3.96 7.41 -2.38 -0.02 3.94 15 24 H 0.16 3.93 8.11 -2.39 -0.02 3.91 15 25 H 0.24 3.84 8.06 -2.91 -0.02 3.81 15 26 H 0.24 3.83 8.06 -2.91 -0.02 3.80 15 Total: -1.00 -84.80 233.47 4.99 -79.82 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: 1.16 Total: 10.69 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: 5.59 Total: 10.95 kcal Atomic # 7 Polarization: -103.77 SS G_CDS: -3.43 Total: -107.20 kcal Atomic # 8 Polarization: -36.22 SS G_CDS: -0.05 Total: -36.27 kcal Atomic # 14 Polarization: 40.29 SS G_CDS: 1.71 Total: 42.00 kcal Total: -84.80 4.99 -79.82 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308402704.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.483 kcal (2) G-P(sol) polarization free energy of solvation -84.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds