Wall clock time and date at job start Sun Mar 29 2020 21:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31439 * 1 3 3 Si 1.86808 * 119.99999 * 2 1 4 4 H 1.48495 * 109.46955 * 240.00113 * 3 2 1 5 5 H 1.48502 * 109.46816 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47215 * 119.99751 * 3 2 1 7 7 C 1.38752 * 120.00179 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00235 * 180.02562 * 7 2 1 9 9 O 1.34922 * 119.99519 * 359.97438 * 7 2 1 10 10 C 1.34320 * 116.99411 * 180.02562 * 9 7 2 11 11 O 1.21208 * 119.99995 * 0.02562 * 10 9 7 12 12 C 1.50698 * 119.99558 * 180.02562 * 10 9 7 13 13 C 1.50701 * 109.47031 * 179.97438 * 12 10 9 14 14 C 1.29445 * 117.95895 * 94.73363 * 13 12 10 15 15 C 1.50074 * 124.07477 * 180.75080 * 14 13 12 16 16 C 1.53016 * 110.14671 * 342.87319 * 15 14 13 17 17 C 1.53391 * 108.44058 * 49.43435 * 16 15 14 18 18 C 1.50066 * 117.96583 * 275.00349 * 13 12 10 19 19 H 0.97003 * 120.00006 * 0.02562 * 1 2 3 20 20 H 1.08999 * 109.47012 * 59.99819 * 12 10 9 21 21 H 1.08997 * 109.47081 * 300.00001 * 12 10 9 22 22 H 1.07999 * 117.96176 * 0.73020 * 14 13 12 23 23 H 1.09002 * 109.35609 * 222.66402 * 15 14 13 24 24 H 1.09003 * 109.35439 * 103.08085 * 15 14 13 25 25 H 1.09003 * 109.64533 * 289.75036 * 16 15 14 26 26 H 1.09000 * 109.64519 * 169.11862 * 16 15 14 27 27 H 1.09001 * 109.64689 * 172.88318 * 17 16 15 28 28 H 1.09003 * 109.64136 * 52.25083 * 17 16 15 29 29 H 1.09003 * 109.35468 * 282.79297 * 18 13 12 30 30 H 1.08998 * 109.35916 * 42.51411 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 3.1021 1.6964 -1.2125 5 1 1.2834 2.7465 -0.0006 6 1 3.1021 1.6965 1.2125 7 6 2.0082 -1.2016 0.0005 8 1 3.0882 -1.2016 0.0010 9 8 1.3335 -2.3700 0.0016 10 6 2.0651 -3.4965 0.0026 11 8 3.2755 -3.4330 0.0030 12 6 1.3809 -4.8392 0.0032 13 6 2.4188 -5.9318 0.0037 14 6 2.7684 -6.4363 1.1434 15 6 3.7982 -7.5160 1.3046 16 6 4.0474 -8.2110 -0.0357 17 6 4.2906 -7.1356 -1.1021 18 6 2.9873 -6.3630 -1.3165 19 1 -0.4850 0.8401 -0.0004 20 1 0.7585 -4.9302 -0.8869 21 1 0.7578 -4.9291 0.8930 22 1 2.2894 -6.0564 2.0336 23 1 3.4440 -8.2477 2.0307 24 1 4.7294 -7.0765 1.6623 25 1 3.1755 -8.8060 -0.3076 26 1 4.9238 -8.8543 0.0425 27 1 4.5944 -7.6080 -2.0363 28 1 5.0697 -6.4529 -0.7629 29 1 2.2680 -7.0028 -1.8279 30 1 3.1875 -5.4835 -1.9283 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308409704.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:23 Heat of formation + Delta-G solvation = -88.250151 kcal Electronic energy + Delta-G solvation = -13641.598990 eV Core-core repulsion = 11208.644884 eV Total energy + Delta-G solvation = -2432.954106 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.104 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.22933 -38.02152 -35.09289 -32.49222 -32.05449 -30.52623 -27.49268 -25.00246 -23.04410 -21.76075 -19.90189 -17.66809 -17.26830 -16.38945 -15.43457 -14.79100 -14.55959 -14.33506 -13.93598 -13.54548 -13.22147 -12.45535 -12.33316 -12.00050 -11.85751 -11.53481 -11.49265 -11.02529 -10.64597 -10.44266 -10.33323 -10.20803 -10.00882 -9.73961 -8.99477 -8.52485 -8.41736 -6.35635 -4.03492 2.53596 3.16941 3.21469 3.25890 3.62501 4.03929 4.75531 4.89570 4.94013 5.06107 5.16936 5.41260 5.48681 5.59332 5.75001 5.75750 5.86802 5.98225 6.10204 6.10924 6.13782 6.30018 6.35477 6.49113 6.78580 7.03778 7.35001 7.45032 8.01688 8.79790 9.13373 9.94020 10.82682 Molecular weight = 210.10amu Principal moments of inertia in cm(-1) A = 0.065350 B = 0.006640 C = 0.006477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.361325 B = 4215.923578 C = 4322.131043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.041 3.959 3 Si 0.943 3.057 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.270 1.270 7 C -0.382 4.382 8 H 0.094 0.906 9 O -0.219 6.219 10 C 0.401 3.599 11 O -0.550 6.550 12 C -0.076 4.076 13 C -0.090 4.090 14 C -0.159 4.159 15 C -0.084 4.084 16 C -0.119 4.119 17 C -0.118 4.118 18 C -0.080 4.080 19 H 0.269 0.731 20 H 0.095 0.905 21 H 0.094 0.906 22 H 0.101 0.899 23 H 0.065 0.935 24 H 0.070 0.930 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.859 -12.535 -0.302 13.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.163 4.163 3 Si 0.768 3.232 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.196 1.196 7 C -0.458 4.458 8 H 0.111 0.889 9 O -0.127 6.127 10 C 0.247 3.753 11 O -0.447 6.447 12 C -0.114 4.114 13 C -0.090 4.090 14 C -0.177 4.177 15 C -0.121 4.121 16 C -0.156 4.156 17 C -0.155 4.155 18 C -0.117 4.117 19 H 0.079 0.921 20 H 0.113 0.887 21 H 0.113 0.887 22 H 0.119 0.881 23 H 0.084 0.916 24 H 0.089 0.911 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.974 -12.335 -0.299 12.963 hybrid contribution 0.311 0.951 0.080 1.004 sum 4.286 -11.384 -0.219 12.165 Atomic orbital electron populations 1.69985 1.05971 1.27643 1.46977 1.25314 0.95792 0.98794 0.96352 0.85759 0.78617 0.79584 0.79284 1.19549 1.20399 1.19553 1.21153 0.92293 0.80003 1.52345 0.88874 1.83889 1.39421 1.13389 1.75967 1.23114 0.86765 0.86975 0.78456 1.90549 1.15677 1.88070 1.50377 1.20288 0.97280 0.89120 1.04715 1.20363 0.97596 0.95677 0.95350 1.21800 0.99647 0.99202 0.97048 1.20367 0.98117 0.96267 0.97336 1.21596 1.01126 0.97561 0.95341 1.21574 0.97944 0.97578 0.98437 1.20349 0.96348 1.00025 0.94999 0.92126 0.88706 0.88747 0.88118 0.91617 0.91125 0.91967 0.92150 0.92078 0.91443 0.91310 0.90674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.99 13.67 55.48 0.76 -25.24 16 2 C 0.04 1.18 5.49 -17.53 -0.10 1.09 16 3 Si 0.94 21.79 29.55 -169.99 -5.02 16.76 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.38 -11.60 9.64 30.92 0.30 -11.30 16 8 H 0.09 2.85 6.86 -52.49 -0.36 2.49 16 9 O -0.22 -6.46 9.75 -20.73 -0.20 -6.66 16 10 C 0.40 10.17 7.90 36.00 0.28 10.45 16 11 O -0.55 -15.12 15.27 -19.05 -0.29 -15.41 16 12 C -0.08 -1.44 5.82 -29.04 -0.17 -1.61 16 13 C -0.09 -1.52 4.33 -100.94 -0.44 -1.95 16 14 C -0.16 -2.48 9.37 -35.90 -0.34 -2.82 16 15 C -0.08 -1.06 6.11 -28.18 -0.17 -1.24 16 16 C -0.12 -1.36 6.01 -26.52 -0.16 -1.52 16 17 C -0.12 -1.54 6.01 -26.52 -0.16 -1.70 16 18 C -0.08 -1.21 5.80 -28.18 -0.16 -1.37 16 19 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 20 H 0.09 1.62 8.11 -51.93 -0.42 1.19 16 21 H 0.09 1.63 7.80 -51.93 -0.41 1.22 16 22 H 0.10 1.56 7.74 -52.49 -0.41 1.16 16 23 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 24 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.06 0.67 8.12 -51.93 -0.42 0.25 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.99 8.12 -51.93 -0.42 0.57 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 259.97 15.07 3.92 3.92 Total: -1.00 -33.29 259.97 -6.06 -39.35 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: -4.11 Total: -0.74 kcal Atomic # 6 Polarization: -10.86 SS G_CDS: -1.11 Total: -11.97 kcal Atomic # 7 Polarization: -25.99 SS G_CDS: 0.76 Total: -25.24 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: -0.49 Total: -22.08 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -33.29 -6.06 -39.35 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308409704.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.901 kcal (2) G-P(sol) polarization free energy of solvation -33.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds