Wall clock time and date at job start Sun Mar 29 2020 21:29:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31439 * 1
3 3 Si 1.86808 * 119.99999 * 2 1
4 4 H 1.48495 * 109.46955 * 240.00113 * 3 2 1
5 5 H 1.48502 * 109.46816 * 359.97438 * 3 2 1
6 6 H 1.48494 * 109.47215 * 119.99751 * 3 2 1
7 7 C 1.38752 * 120.00179 * 179.97438 * 2 1 3
8 8 H 1.07998 * 120.00235 * 180.02562 * 7 2 1
9 9 O 1.34922 * 119.99519 * 359.97438 * 7 2 1
10 10 C 1.34320 * 116.99411 * 180.02562 * 9 7 2
11 11 O 1.21208 * 119.99995 * 0.02562 * 10 9 7
12 12 C 1.50698 * 119.99558 * 180.02562 * 10 9 7
13 13 C 1.50701 * 109.47031 * 179.97438 * 12 10 9
14 14 C 1.29445 * 117.95895 * 94.73363 * 13 12 10
15 15 C 1.50074 * 124.07477 * 180.75080 * 14 13 12
16 16 C 1.53016 * 110.14671 * 342.87319 * 15 14 13
17 17 C 1.53391 * 108.44058 * 49.43435 * 16 15 14
18 18 C 1.50066 * 117.96583 * 275.00349 * 13 12 10
19 19 H 0.97003 * 120.00006 * 0.02562 * 1 2 3
20 20 H 1.08999 * 109.47012 * 59.99819 * 12 10 9
21 21 H 1.08997 * 109.47081 * 300.00001 * 12 10 9
22 22 H 1.07999 * 117.96176 * 0.73020 * 14 13 12
23 23 H 1.09002 * 109.35609 * 222.66402 * 15 14 13
24 24 H 1.09003 * 109.35439 * 103.08085 * 15 14 13
25 25 H 1.09003 * 109.64533 * 289.75036 * 16 15 14
26 26 H 1.09000 * 109.64519 * 169.11862 * 16 15 14
27 27 H 1.09001 * 109.64689 * 172.88318 * 17 16 15
28 28 H 1.09003 * 109.64136 * 52.25083 * 17 16 15
29 29 H 1.09003 * 109.35468 * 282.79297 * 18 13 12
30 30 H 1.08998 * 109.35916 * 42.51411 * 18 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3144 0.0000 0.0000
3 14 2.2484 1.6178 0.0000
4 1 3.1021 1.6964 -1.2125
5 1 1.2834 2.7465 -0.0006
6 1 3.1021 1.6965 1.2125
7 6 2.0082 -1.2016 0.0005
8 1 3.0882 -1.2016 0.0010
9 8 1.3335 -2.3700 0.0016
10 6 2.0651 -3.4965 0.0026
11 8 3.2755 -3.4330 0.0030
12 6 1.3809 -4.8392 0.0032
13 6 2.4188 -5.9318 0.0037
14 6 2.7684 -6.4363 1.1434
15 6 3.7982 -7.5160 1.3046
16 6 4.0474 -8.2110 -0.0357
17 6 4.2906 -7.1356 -1.1021
18 6 2.9873 -6.3630 -1.3165
19 1 -0.4850 0.8401 -0.0004
20 1 0.7585 -4.9302 -0.8869
21 1 0.7578 -4.9291 0.8930
22 1 2.2894 -6.0564 2.0336
23 1 3.4440 -8.2477 2.0307
24 1 4.7294 -7.0765 1.6623
25 1 3.1755 -8.8060 -0.3076
26 1 4.9238 -8.8543 0.0425
27 1 4.5944 -7.6080 -2.0363
28 1 5.0697 -6.4529 -0.7629
29 1 2.2680 -7.0028 -1.8279
30 1 3.1875 -5.4835 -1.9283
RHF calculation, no. of doubly occupied orbitals= 39
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000308409704.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:29:23
Heat of formation + Delta-G solvation = -108.195562 kcal
Electronic energy + Delta-G solvation = -13642.463888 eV
Core-core repulsion = 11208.644884 eV
Total energy + Delta-G solvation = -2433.819004 eV
No. of doubly occupied orbitals = 39
Molecular weight
(most abundant/longest-lived isotopes) = 210.104 amu
Computer time = 0.18 seconds
Orbital eigenvalues (eV)
-41.13552 -39.40830 -37.17330 -34.32890 -33.79309 -31.63141 -29.05327 -27.07531
-24.17874 -23.07788 -21.63943 -19.88224 -18.58589 -18.31178 -16.81566 -16.72475
-16.46406 -16.06887 -15.18155 -14.76369 -14.52287 -14.25880 -13.71117 -13.53448
-13.21665 -13.08434 -12.99838 -12.67525 -12.30175 -12.17781 -12.02932 -11.63526
-11.32960 -11.11344 -11.02856 -10.71035 -9.70999 -8.54790 -6.35282 1.19643
1.31667 1.34101 1.49353 1.65831 2.15135 2.95886 2.97684 3.65375
3.79208 4.08253 4.25289 4.34121 4.45661 4.53043 4.65508 4.71211
4.74100 4.83775 5.01310 5.04528 5.10063 5.14701 5.22564 5.33598
5.49285 5.73953 5.82691 6.10038 6.67749 6.90083 7.77872 8.65919
Molecular weight = 210.10amu
Principal moments of inertia in cm(-1)
A = 0.065350 B = 0.006640 C = 0.006477
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 428.361325 B = 4215.923578 C = 4322.131043
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.905 5.905
2 C -0.005 4.005
3 Si 1.018 2.982
4 H -0.262 1.262
5 H -0.258 1.258
6 H -0.262 1.262
7 C -0.423 4.423
8 H 0.079 0.921
9 O -0.250 6.250
10 C 0.398 3.602
11 O -0.576 6.576
12 C -0.068 4.068
13 C -0.115 4.115
14 C -0.152 4.152
15 C -0.087 4.087
16 C -0.113 4.113
17 C -0.118 4.118
18 C -0.081 4.081
19 H 0.279 0.721
20 H 0.113 0.887
21 H 0.111 0.889
22 H 0.097 0.903
23 H 0.091 0.909
24 H 0.067 0.933
25 H 0.075 0.925
26 H 0.083 0.917
27 H 0.083 0.917
28 H 0.043 0.957
29 H 0.093 0.907
30 H 0.045 0.955
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.298 -13.436 -0.182 14.108
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.542 5.542
2 C -0.205 4.205
3 Si 0.836 3.164
4 H -0.186 1.186
5 H -0.182 1.182
6 H -0.187 1.187
7 C -0.499 4.499
8 H 0.097 0.903
9 O -0.159 6.159
10 C 0.246 3.754
11 O -0.473 6.473
12 C -0.106 4.106
13 C -0.115 4.115
14 C -0.170 4.170
15 C -0.124 4.124
16 C -0.150 4.150
17 C -0.155 4.155
18 C -0.118 4.118
19 H 0.088 0.912
20 H 0.131 0.869
21 H 0.129 0.871
22 H 0.115 0.885
23 H 0.109 0.891
24 H 0.086 0.914
25 H 0.093 0.907
26 H 0.101 0.899
27 H 0.101 0.899
28 H 0.062 0.938
29 H 0.111 0.889
30 H 0.064 0.936
Dipole moment (debyes) X Y Z Total
from point charges 4.406 -13.265 -0.179 13.979
hybrid contribution 0.170 1.139 0.077 1.154
sum 4.575 -12.126 -0.102 12.961
Atomic orbital electron populations
1.70069 1.07646 1.29433 1.47052 1.26547 0.96905 1.02350 0.94685
0.84694 0.77613 0.74345 0.79733 1.18643 1.18165 1.18681 1.21366
0.92083 0.81369 1.55096 0.90305 1.83913 1.40485 1.14312 1.77174
1.24446 0.86826 0.88059 0.76119 1.90511 1.17115 1.88602 1.51097
1.20435 0.97985 0.85795 1.06350 1.20456 0.98360 0.95889 0.96842
1.22149 0.99236 0.99250 0.96360 1.20476 0.96918 0.95956 0.99003
1.21597 1.02752 0.97070 0.93605 1.21585 0.96046 0.97614 1.00256
1.20381 0.98039 0.99571 0.93794 0.91173 0.86858 0.87075 0.88491
0.89058 0.91429 0.90653 0.89856 0.89879 0.93795 0.88893 0.93629
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -54.68 13.67 21.62 0.30 -54.39 16
2 C 0.00 -0.29 5.49 84.87 0.47 0.18 16
3 Si 1.02 44.48 29.55 68.60 2.03 46.51 16
4 H -0.26 -11.02 7.11 99.48 0.71 -10.32 16
5 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16
6 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16
7 C -0.42 -26.58 9.64 67.94 0.66 -25.92 16
8 H 0.08 5.02 6.86 -2.91 -0.02 5.00 16
9 O -0.25 -15.28 9.75 14.77 0.14 -15.14 16
10 C 0.40 20.79 7.90 71.24 0.56 21.35 16
11 O -0.58 -32.76 15.27 20.78 0.32 -32.44 16
12 C -0.07 -2.58 5.82 29.10 0.17 -2.41 16
13 C -0.12 -3.81 4.33 -15.10 -0.07 -3.88 16
14 C -0.15 -4.54 9.37 27.04 0.25 -4.29 16
15 C -0.09 -1.98 6.11 29.66 0.18 -1.80 16
16 C -0.11 -2.23 6.01 30.73 0.18 -2.04 16
17 C -0.12 -2.88 6.01 30.73 0.18 -2.70 16
18 C -0.08 -2.36 5.80 29.66 0.17 -2.19 16
19 H 0.28 15.27 8.31 -92.71 -0.77 14.49 16
20 H 0.11 3.82 8.11 -2.39 -0.02 3.80 16
21 H 0.11 3.78 7.80 -2.39 -0.02 3.77 16
22 H 0.10 2.91 7.74 -2.91 -0.02 2.89 16
23 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16
24 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16
25 H 0.07 1.33 8.12 -2.39 -0.02 1.31 16
26 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16
27 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16
28 H 0.04 1.27 8.12 -2.39 -0.02 1.25 16
29 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16
30 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16
Total: -1.00 -73.70 259.97 6.66 -67.04
By element:
Atomic # 1 Polarization: 11.00 SS G_CDS: 1.11 Total: 12.11 kcal
Atomic # 6 Polarization: -26.46 SS G_CDS: 2.76 Total: -23.70 kcal
Atomic # 7 Polarization: -54.68 SS G_CDS: 0.30 Total: -54.39 kcal
Atomic # 8 Polarization: -48.04 SS G_CDS: 0.46 Total: -47.58 kcal
Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal
Total: -73.70 6.66 -67.04 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000308409704.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -41.155 kcal
(2) G-P(sol) polarization free energy of solvation -73.703 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.858 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.663 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.040 kcal
(6) G-S(sol) free energy of system = (1) + (5) -108.196 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.19 seconds