Wall clock time and date at job start Sun Mar 29 2020 21:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31439 * 1 3 3 Si 1.86808 * 119.99999 * 2 1 4 4 H 1.48495 * 109.46955 * 240.00113 * 3 2 1 5 5 H 1.48502 * 109.46816 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47215 * 119.99751 * 3 2 1 7 7 C 1.38752 * 120.00179 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00235 * 180.02562 * 7 2 1 9 9 O 1.34922 * 119.99519 * 359.97438 * 7 2 1 10 10 C 1.34320 * 116.99411 * 180.02562 * 9 7 2 11 11 O 1.21208 * 119.99995 * 0.02562 * 10 9 7 12 12 C 1.50698 * 119.99558 * 180.02562 * 10 9 7 13 13 C 1.50701 * 109.47031 * 179.97438 * 12 10 9 14 14 C 1.29445 * 117.95895 * 94.73363 * 13 12 10 15 15 C 1.50074 * 124.07477 * 180.75080 * 14 13 12 16 16 C 1.53016 * 110.14671 * 342.87319 * 15 14 13 17 17 C 1.53391 * 108.44058 * 49.43435 * 16 15 14 18 18 C 1.50066 * 117.96583 * 275.00349 * 13 12 10 19 19 H 0.97003 * 120.00006 * 0.02562 * 1 2 3 20 20 H 1.08999 * 109.47012 * 59.99819 * 12 10 9 21 21 H 1.08997 * 109.47081 * 300.00001 * 12 10 9 22 22 H 1.07999 * 117.96176 * 0.73020 * 14 13 12 23 23 H 1.09002 * 109.35609 * 222.66402 * 15 14 13 24 24 H 1.09003 * 109.35439 * 103.08085 * 15 14 13 25 25 H 1.09003 * 109.64533 * 289.75036 * 16 15 14 26 26 H 1.09000 * 109.64519 * 169.11862 * 16 15 14 27 27 H 1.09001 * 109.64689 * 172.88318 * 17 16 15 28 28 H 1.09003 * 109.64136 * 52.25083 * 17 16 15 29 29 H 1.09003 * 109.35468 * 282.79297 * 18 13 12 30 30 H 1.08998 * 109.35916 * 42.51411 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 3.1021 1.6964 -1.2125 5 1 1.2834 2.7465 -0.0006 6 1 3.1021 1.6965 1.2125 7 6 2.0082 -1.2016 0.0005 8 1 3.0882 -1.2016 0.0010 9 8 1.3335 -2.3700 0.0016 10 6 2.0651 -3.4965 0.0026 11 8 3.2755 -3.4330 0.0030 12 6 1.3809 -4.8392 0.0032 13 6 2.4188 -5.9318 0.0037 14 6 2.7684 -6.4363 1.1434 15 6 3.7982 -7.5160 1.3046 16 6 4.0474 -8.2110 -0.0357 17 6 4.2906 -7.1356 -1.1021 18 6 2.9873 -6.3630 -1.3165 19 1 -0.4850 0.8401 -0.0004 20 1 0.7585 -4.9302 -0.8869 21 1 0.7578 -4.9291 0.8930 22 1 2.2894 -6.0564 2.0336 23 1 3.4440 -8.2477 2.0307 24 1 4.7294 -7.0765 1.6623 25 1 3.1755 -8.8060 -0.3076 26 1 4.9238 -8.8543 0.0425 27 1 4.5944 -7.6080 -2.0363 28 1 5.0697 -6.4529 -0.7629 29 1 2.2680 -7.0028 -1.8279 30 1 3.1875 -5.4835 -1.9283 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308409704.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:23 Heat of formation + Delta-G solvation = -108.195562 kcal Electronic energy + Delta-G solvation = -13642.463888 eV Core-core repulsion = 11208.644884 eV Total energy + Delta-G solvation = -2433.819004 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.104 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.13552 -39.40830 -37.17330 -34.32890 -33.79309 -31.63141 -29.05327 -27.07531 -24.17874 -23.07788 -21.63943 -19.88224 -18.58589 -18.31178 -16.81566 -16.72475 -16.46406 -16.06887 -15.18155 -14.76369 -14.52287 -14.25880 -13.71117 -13.53448 -13.21665 -13.08434 -12.99838 -12.67525 -12.30175 -12.17781 -12.02932 -11.63526 -11.32960 -11.11344 -11.02856 -10.71035 -9.70999 -8.54790 -6.35282 1.19643 1.31667 1.34101 1.49353 1.65831 2.15135 2.95886 2.97684 3.65375 3.79208 4.08253 4.25289 4.34121 4.45661 4.53043 4.65508 4.71211 4.74100 4.83775 5.01310 5.04528 5.10063 5.14701 5.22564 5.33598 5.49285 5.73953 5.82691 6.10038 6.67749 6.90083 7.77872 8.65919 Molecular weight = 210.10amu Principal moments of inertia in cm(-1) A = 0.065350 B = 0.006640 C = 0.006477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.361325 B = 4215.923578 C = 4322.131043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.005 4.005 3 Si 1.018 2.982 4 H -0.262 1.262 5 H -0.258 1.258 6 H -0.262 1.262 7 C -0.423 4.423 8 H 0.079 0.921 9 O -0.250 6.250 10 C 0.398 3.602 11 O -0.576 6.576 12 C -0.068 4.068 13 C -0.115 4.115 14 C -0.152 4.152 15 C -0.087 4.087 16 C -0.113 4.113 17 C -0.118 4.118 18 C -0.081 4.081 19 H 0.279 0.721 20 H 0.113 0.887 21 H 0.111 0.889 22 H 0.097 0.903 23 H 0.091 0.909 24 H 0.067 0.933 25 H 0.075 0.925 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.043 0.957 29 H 0.093 0.907 30 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.298 -13.436 -0.182 14.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.205 4.205 3 Si 0.836 3.164 4 H -0.186 1.186 5 H -0.182 1.182 6 H -0.187 1.187 7 C -0.499 4.499 8 H 0.097 0.903 9 O -0.159 6.159 10 C 0.246 3.754 11 O -0.473 6.473 12 C -0.106 4.106 13 C -0.115 4.115 14 C -0.170 4.170 15 C -0.124 4.124 16 C -0.150 4.150 17 C -0.155 4.155 18 C -0.118 4.118 19 H 0.088 0.912 20 H 0.131 0.869 21 H 0.129 0.871 22 H 0.115 0.885 23 H 0.109 0.891 24 H 0.086 0.914 25 H 0.093 0.907 26 H 0.101 0.899 27 H 0.101 0.899 28 H 0.062 0.938 29 H 0.111 0.889 30 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.406 -13.265 -0.179 13.979 hybrid contribution 0.170 1.139 0.077 1.154 sum 4.575 -12.126 -0.102 12.961 Atomic orbital electron populations 1.70069 1.07646 1.29433 1.47052 1.26547 0.96905 1.02350 0.94685 0.84694 0.77613 0.74345 0.79733 1.18643 1.18165 1.18681 1.21366 0.92083 0.81369 1.55096 0.90305 1.83913 1.40485 1.14312 1.77174 1.24446 0.86826 0.88059 0.76119 1.90511 1.17115 1.88602 1.51097 1.20435 0.97985 0.85795 1.06350 1.20456 0.98360 0.95889 0.96842 1.22149 0.99236 0.99250 0.96360 1.20476 0.96918 0.95956 0.99003 1.21597 1.02752 0.97070 0.93605 1.21585 0.96046 0.97614 1.00256 1.20381 0.98039 0.99571 0.93794 0.91173 0.86858 0.87075 0.88491 0.89058 0.91429 0.90653 0.89856 0.89879 0.93795 0.88893 0.93629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.68 13.67 21.62 0.30 -54.39 16 2 C 0.00 -0.29 5.49 84.87 0.47 0.18 16 3 Si 1.02 44.48 29.55 68.60 2.03 46.51 16 4 H -0.26 -11.02 7.11 99.48 0.71 -10.32 16 5 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 6 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 7 C -0.42 -26.58 9.64 67.94 0.66 -25.92 16 8 H 0.08 5.02 6.86 -2.91 -0.02 5.00 16 9 O -0.25 -15.28 9.75 14.77 0.14 -15.14 16 10 C 0.40 20.79 7.90 71.24 0.56 21.35 16 11 O -0.58 -32.76 15.27 20.78 0.32 -32.44 16 12 C -0.07 -2.58 5.82 29.10 0.17 -2.41 16 13 C -0.12 -3.81 4.33 -15.10 -0.07 -3.88 16 14 C -0.15 -4.54 9.37 27.04 0.25 -4.29 16 15 C -0.09 -1.98 6.11 29.66 0.18 -1.80 16 16 C -0.11 -2.23 6.01 30.73 0.18 -2.04 16 17 C -0.12 -2.88 6.01 30.73 0.18 -2.70 16 18 C -0.08 -2.36 5.80 29.66 0.17 -2.19 16 19 H 0.28 15.27 8.31 -92.71 -0.77 14.49 16 20 H 0.11 3.82 8.11 -2.39 -0.02 3.80 16 21 H 0.11 3.78 7.80 -2.39 -0.02 3.77 16 22 H 0.10 2.91 7.74 -2.91 -0.02 2.89 16 23 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 24 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.07 1.33 8.12 -2.39 -0.02 1.31 16 26 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.04 1.27 8.12 -2.39 -0.02 1.25 16 29 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -73.70 259.97 6.66 -67.04 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: 1.11 Total: 12.11 kcal Atomic # 6 Polarization: -26.46 SS G_CDS: 2.76 Total: -23.70 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: 0.30 Total: -54.39 kcal Atomic # 8 Polarization: -48.04 SS G_CDS: 0.46 Total: -47.58 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -73.70 6.66 -67.04 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308409704.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.155 kcal (2) G-P(sol) polarization free energy of solvation -73.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds