Wall clock time and date at job start Sun Mar 29 2020 21:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50694 * 109.46878 * 2 1 4 4 N 1.29929 * 125.36576 * 90.00481 * 3 2 1 5 5 C 1.36093 * 108.48347 * 179.97438 * 4 3 2 6 6 C 1.47232 * 126.46551 * 179.97438 * 5 4 3 7 7 O 1.21563 * 119.99785 * 180.02562 * 6 5 4 8 8 O 1.34798 * 119.99756 * 0.04010 * 6 5 4 9 9 C 1.34877 * 116.99658 * 179.97438 * 8 6 5 10 10 H 1.07996 * 120.00232 * 0.02562 * 9 8 6 11 11 C 1.38772 * 119.99756 * 179.97438 * 9 8 6 12 12 N 1.31438 * 120.00167 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99947 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47290 * 90.00122 * 13 11 9 15 15 H 1.48500 * 109.47205 * 210.00333 * 13 11 9 16 16 H 1.48507 * 109.47235 * 329.99914 * 13 11 9 17 17 C 1.36235 * 107.07388 * 359.97438 * 5 4 3 18 18 O 1.34052 * 125.36591 * 269.97158 * 3 2 1 19 19 H 1.09000 * 109.46974 * 180.02562 * 1 2 3 20 20 H 1.08996 * 109.47043 * 299.99752 * 1 2 3 21 21 H 1.08996 * 109.47447 * 60.00143 * 1 2 3 22 22 H 1.09000 * 109.46801 * 239.99788 * 2 1 3 23 23 H 1.09007 * 109.47054 * 120.00028 * 2 1 3 24 24 H 0.96997 * 120.00086 * 180.02562 * 12 11 9 25 25 H 1.07995 * 126.53271 * 179.73960 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.2830 2.1298 1.0595 5 6 2.7175 3.3574 0.6643 6 6 3.1110 4.4712 1.5432 7 8 3.4830 5.5234 1.0614 8 8 3.0589 4.3239 2.8821 9 6 3.4334 5.3824 3.6295 10 1 3.7558 6.2949 3.1502 11 6 3.4034 5.2992 5.0144 12 7 3.0105 4.1888 5.5978 13 14 3.9214 6.7653 6.0496 14 1 2.7387 7.6205 6.3234 15 1 4.4943 6.2871 7.3335 16 1 4.9430 7.5538 5.3149 17 6 2.7198 3.3614 -0.6980 18 8 2.2914 2.1521 -1.0932 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5139 0.8900 24 1 2.9892 4.1308 6.5658 25 1 3.0066 4.1827 -1.3380 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308443522.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:07 Heat of formation + Delta-G solvation = -62.472971 kcal Electronic energy + Delta-G solvation = -13346.015972 eV Core-core repulsion = 10712.920642 eV Total energy + Delta-G solvation = -2633.095330 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.068 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.01859 -38.77689 -35.22890 -34.67479 -33.68995 -32.16066 -29.19635 -25.84638 -24.26969 -23.51921 -21.05947 -19.82891 -17.78501 -17.49608 -16.49557 -16.11163 -14.97651 -14.59427 -14.36033 -14.30424 -14.18794 -13.15941 -12.70324 -12.46352 -11.80691 -11.62681 -11.35030 -11.22164 -10.86935 -10.44758 -10.38190 -10.26155 -9.86484 -9.26916 -8.65918 -8.57515 -6.43772 -4.08509 1.50543 2.49083 2.87235 3.17061 3.18050 3.24977 3.84138 4.04845 4.15330 4.55500 4.95084 5.10788 5.15392 5.26194 5.36867 5.68493 5.81326 5.93427 6.01167 6.09345 6.21869 6.84541 7.35493 7.88066 7.96611 8.64025 9.02462 9.83204 10.73006 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.049227 B = 0.007555 C = 0.006686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.651860 B = 3705.302206 C = 4187.114972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.022 4.022 3 C 0.177 3.823 4 N -0.436 5.436 5 C -0.013 4.013 6 C 0.467 3.533 7 O -0.554 6.554 8 O -0.184 6.184 9 C -0.380 4.380 10 H 0.099 0.901 11 C 0.043 3.957 12 N -0.850 5.850 13 Si 0.947 3.053 14 H -0.272 1.272 15 H -0.277 1.277 16 H -0.265 1.265 17 C -0.018 4.018 18 O -0.203 6.203 19 H 0.070 0.930 20 H 0.066 0.934 21 H 0.058 0.942 22 H 0.090 0.910 23 H 0.107 0.893 24 H 0.272 0.728 25 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.138 -7.033 -9.644 12.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.060 4.060 3 C -0.032 4.032 4 N -0.166 5.166 5 C -0.132 4.132 6 C 0.314 3.686 7 O -0.453 6.453 8 O -0.089 6.089 9 C -0.456 4.456 10 H 0.117 0.883 11 C -0.163 4.163 12 N -0.486 5.486 13 Si 0.771 3.229 14 H -0.197 1.197 15 H -0.202 1.202 16 H -0.189 1.189 17 C -0.090 4.090 18 O -0.090 6.090 19 H 0.089 0.911 20 H 0.086 0.914 21 H 0.077 0.923 22 H 0.109 0.891 23 H 0.125 0.875 24 H 0.082 0.918 25 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -3.148 -7.085 -8.893 11.798 hybrid contribution 0.373 1.036 -0.151 1.111 sum -2.775 -6.049 -9.044 11.229 Atomic orbital electron populations 1.21792 0.93274 1.02698 1.03141 1.20025 0.96750 0.84211 1.05037 1.26401 1.01025 0.97168 0.78578 1.70993 1.13836 1.02667 1.29066 1.21089 1.07149 0.93128 0.91786 1.19145 0.81227 0.84964 0.83219 1.90666 1.49917 1.28173 1.76545 1.84013 1.69369 1.41000 1.14500 1.21383 1.44426 0.92389 0.87446 0.88328 1.25435 0.96325 0.98617 0.95927 1.70036 1.42184 1.25630 1.10734 0.85621 0.79121 0.79536 0.78598 1.19736 1.20196 1.18934 1.25082 1.01716 0.86737 0.95485 1.84309 1.64091 1.22626 1.37999 0.91082 0.91442 0.92294 0.89104 0.87507 0.91847 0.75525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.89 37.16 0.37 -1.12 15 2 C -0.02 -0.25 6.56 -27.89 -0.18 -0.43 15 3 C 0.18 2.94 7.56 -13.09 -0.10 2.84 15 4 N -0.44 -9.44 11.36 -7.67 -0.09 -9.53 15 5 C -0.01 -0.29 7.04 -83.04 -0.58 -0.87 15 6 C 0.47 12.75 7.89 34.38 0.27 13.02 15 7 O -0.55 -15.49 16.14 -19.31 -0.31 -15.80 15 8 O -0.18 -5.70 9.75 -21.89 -0.21 -5.91 15 9 C -0.38 -11.65 9.65 30.93 0.30 -11.35 15 10 H 0.10 2.98 6.86 -52.49 -0.36 2.62 15 11 C 0.04 1.23 5.49 -17.52 -0.10 1.14 15 12 N -0.85 -25.62 13.67 55.48 0.76 -24.86 15 13 Si 0.95 21.50 29.55 -169.99 -5.02 16.48 15 14 H -0.27 -5.97 7.11 56.52 0.40 -5.57 15 15 H -0.28 -6.02 7.11 56.52 0.40 -5.61 15 16 H -0.27 -5.88 7.11 56.52 0.40 -5.48 15 17 C -0.02 -0.32 11.95 30.01 0.36 0.04 15 18 O -0.20 -3.24 10.72 6.54 0.07 -3.17 15 19 H 0.07 0.51 8.14 -51.93 -0.42 0.09 15 20 H 0.07 0.79 8.14 -51.93 -0.42 0.37 15 21 H 0.06 0.56 8.14 -51.93 -0.42 0.14 15 22 H 0.09 0.75 8.14 -51.93 -0.42 0.33 15 23 H 0.11 1.14 8.14 -51.92 -0.42 0.72 15 24 H 0.27 7.41 8.31 -40.82 -0.34 7.07 15 25 H 0.23 3.16 8.06 -52.49 -0.42 2.74 15 LS Contribution 242.49 15.07 3.65 3.65 Total: -1.00 -35.62 242.49 -2.85 -38.47 By element: Atomic # 1 Polarization: -0.56 SS G_CDS: -2.03 Total: -2.59 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: 0.33 Total: 3.27 kcal Atomic # 7 Polarization: -35.06 SS G_CDS: 0.67 Total: -34.39 kcal Atomic # 8 Polarization: -24.43 SS G_CDS: -0.46 Total: -24.89 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -35.62 -2.85 -38.47 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308443522.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.005 kcal (2) G-P(sol) polarization free energy of solvation -35.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds