Wall clock time and date at job start Sun Mar 29 2020 21:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50694 * 109.46878 * 2 1 4 4 N 1.29929 * 125.36576 * 90.00481 * 3 2 1 5 5 C 1.36093 * 108.48347 * 179.97438 * 4 3 2 6 6 C 1.47232 * 126.46551 * 179.97438 * 5 4 3 7 7 O 1.21563 * 119.99785 * 180.02562 * 6 5 4 8 8 O 1.34798 * 119.99756 * 0.04010 * 6 5 4 9 9 C 1.34877 * 116.99658 * 179.97438 * 8 6 5 10 10 H 1.07996 * 120.00232 * 0.02562 * 9 8 6 11 11 C 1.38772 * 119.99756 * 179.97438 * 9 8 6 12 12 N 1.31438 * 120.00167 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99947 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47290 * 90.00122 * 13 11 9 15 15 H 1.48500 * 109.47205 * 210.00333 * 13 11 9 16 16 H 1.48507 * 109.47235 * 329.99914 * 13 11 9 17 17 C 1.36235 * 107.07388 * 359.97438 * 5 4 3 18 18 O 1.34052 * 125.36591 * 269.97158 * 3 2 1 19 19 H 1.09000 * 109.46974 * 180.02562 * 1 2 3 20 20 H 1.08996 * 109.47043 * 299.99752 * 1 2 3 21 21 H 1.08996 * 109.47447 * 60.00143 * 1 2 3 22 22 H 1.09000 * 109.46801 * 239.99788 * 2 1 3 23 23 H 1.09007 * 109.47054 * 120.00028 * 2 1 3 24 24 H 0.96997 * 120.00086 * 180.02562 * 12 11 9 25 25 H 1.07995 * 126.53271 * 179.73960 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.2830 2.1298 1.0595 5 6 2.7175 3.3574 0.6643 6 6 3.1110 4.4712 1.5432 7 8 3.4830 5.5234 1.0614 8 8 3.0589 4.3239 2.8821 9 6 3.4334 5.3824 3.6295 10 1 3.7558 6.2949 3.1502 11 6 3.4034 5.2992 5.0144 12 7 3.0105 4.1888 5.5978 13 14 3.9214 6.7653 6.0496 14 1 2.7387 7.6205 6.3234 15 1 4.4943 6.2871 7.3335 16 1 4.9430 7.5538 5.3149 17 6 2.7198 3.3614 -0.6980 18 8 2.2914 2.1521 -1.0932 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5139 0.8900 24 1 2.9892 4.1308 6.5658 25 1 3.0066 4.1827 -1.3380 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308443522.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:07 Heat of formation + Delta-G solvation = -90.352578 kcal Electronic energy + Delta-G solvation = -13347.224922 eV Core-core repulsion = 10712.920642 eV Total energy + Delta-G solvation = -2634.304280 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.068 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -44.47670 -40.93881 -37.40387 -36.07412 -34.84917 -34.36007 -30.62211 -27.95998 -25.57086 -25.10922 -22.56450 -21.44050 -19.97645 -19.33340 -17.97168 -17.77112 -16.81306 -16.50782 -16.26851 -15.68517 -15.38007 -14.54195 -14.50443 -13.66468 -13.58135 -13.33280 -12.63568 -12.54129 -12.27920 -12.20940 -12.08735 -12.01812 -11.78348 -11.41178 -10.76771 -10.12837 -8.60437 -6.40733 -0.02845 0.91235 1.31529 1.42078 1.50039 1.54438 2.03781 2.10773 2.48515 2.95049 3.04035 3.74058 4.20271 4.24921 4.29360 4.43911 4.52560 4.72904 4.97833 5.03357 5.07339 5.16145 5.35476 5.72245 6.36860 6.58404 6.81585 7.64946 8.60349 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.049227 B = 0.007555 C = 0.006686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.651860 B = 3705.302206 C = 4187.114972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.024 4.024 3 C 0.200 3.800 4 N -0.492 5.492 5 C -0.075 4.075 6 C 0.469 3.531 7 O -0.570 6.570 8 O -0.223 6.223 9 C -0.427 4.427 10 H 0.090 0.910 11 C -0.005 4.005 12 N -0.897 5.897 13 Si 1.028 2.972 14 H -0.257 1.257 15 H -0.258 1.258 16 H -0.259 1.259 17 C 0.035 3.965 18 O -0.186 6.186 19 H 0.104 0.896 20 H 0.039 0.961 21 H 0.064 0.936 22 H 0.132 0.868 23 H 0.110 0.890 24 H 0.282 0.718 25 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.304 -7.624 -10.961 13.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.061 4.061 3 C -0.010 4.010 4 N -0.222 5.222 5 C -0.191 4.191 6 C 0.318 3.682 7 O -0.469 6.469 8 O -0.130 6.130 9 C -0.503 4.503 10 H 0.108 0.892 11 C -0.206 4.206 12 N -0.533 5.533 13 Si 0.845 3.155 14 H -0.181 1.181 15 H -0.182 1.182 16 H -0.183 1.183 17 C -0.039 4.039 18 O -0.072 6.072 19 H 0.122 0.878 20 H 0.058 0.942 21 H 0.083 0.917 22 H 0.150 0.850 23 H 0.128 0.872 24 H 0.091 0.909 25 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges -3.323 -7.692 -10.225 13.220 hybrid contribution 0.368 1.072 0.027 1.134 sum -2.954 -6.620 -10.198 12.512 Atomic orbital electron populations 1.21795 0.92106 1.04567 1.02058 1.20463 0.97525 0.80926 1.07212 1.27470 0.97962 0.98182 0.77399 1.70899 1.16365 1.03149 1.31754 1.20796 1.12157 0.93204 0.92965 1.19969 0.79306 0.86135 0.82746 1.90610 1.50319 1.29327 1.76624 1.84036 1.70970 1.41667 1.16289 1.21686 1.47299 0.92623 0.88653 0.89201 1.26789 0.95164 1.02248 0.96406 1.70134 1.43255 1.28184 1.11741 0.84508 0.79252 0.75072 0.76695 1.18127 1.18157 1.18275 1.25675 0.97078 0.87390 0.93710 1.84396 1.63417 1.21903 1.37478 0.87764 0.94173 0.91717 0.85009 0.87173 0.90884 0.71813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 9.89 71.98 0.71 -1.78 15 2 C -0.02 -0.45 6.56 29.85 0.20 -0.26 15 3 C 0.20 6.25 7.56 88.39 0.67 6.91 15 4 N -0.49 -21.53 11.36 -293.10 -3.33 -24.86 15 5 C -0.07 -3.41 7.04 40.38 0.28 -3.12 15 6 C 0.47 26.67 7.89 70.19 0.55 27.23 15 7 O -0.57 -32.76 16.14 19.63 0.32 -32.44 15 8 O -0.22 -14.59 9.75 10.43 0.10 -14.48 15 9 C -0.43 -27.39 9.65 67.95 0.66 -26.74 15 10 H 0.09 5.69 6.86 -2.91 -0.02 5.67 15 11 C -0.01 -0.30 5.49 84.88 0.47 0.17 15 12 N -0.90 -55.71 13.67 21.63 0.30 -55.42 15 13 Si 1.03 44.43 29.55 68.60 2.03 46.46 15 14 H -0.26 -10.42 7.11 99.48 0.71 -9.71 15 15 H -0.26 -10.24 7.11 99.48 0.71 -9.54 15 16 H -0.26 -10.81 7.11 99.48 0.71 -10.10 15 17 C 0.03 1.15 11.95 67.35 0.80 1.95 15 18 O -0.19 -5.34 10.72 0.49 0.01 -5.33 15 19 H 0.10 1.11 8.14 -2.39 -0.02 1.09 15 20 H 0.04 0.90 8.14 -2.39 -0.02 0.88 15 21 H 0.06 1.03 8.14 -2.39 -0.02 1.01 15 22 H 0.13 1.52 8.14 -2.39 -0.02 1.50 15 23 H 0.11 2.10 8.14 -2.38 -0.02 2.08 15 24 H 0.28 15.67 8.31 -92.71 -0.77 14.90 15 25 H 0.27 6.45 8.06 -2.91 -0.02 6.42 15 Total: -1.00 -82.47 242.49 4.97 -77.50 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: 1.21 Total: 4.21 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: 4.34 Total: 4.37 kcal Atomic # 7 Polarization: -77.24 SS G_CDS: -3.03 Total: -80.27 kcal Atomic # 8 Polarization: -52.68 SS G_CDS: 0.42 Total: -52.26 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -82.47 4.97 -77.50 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308443522.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.854 kcal (2) G-P(sol) polarization free energy of solvation -82.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds