Wall clock time and date at job start Sun Mar 29 2020 21:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86798 * 119.99816 * 2 1 4 4 H 1.48501 * 109.47038 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47219 * 300.00341 * 3 2 1 6 6 H 1.48501 * 109.47160 * 60.00542 * 3 2 1 7 7 C 1.37874 * 119.99994 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00008 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00296 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47327 * 180.02562 * 9 7 2 11 11 N 1.46501 * 109.47090 * 179.97438 * 10 9 7 12 12 C 1.35859 * 119.62167 * 89.99730 * 11 10 9 13 13 C 1.35285 * 120.73672 * 179.69903 * 12 11 10 14 14 C 1.40246 * 119.97905 * 0.27916 * 13 12 11 15 15 C 1.36475 * 119.26242 * 0.02562 * 14 13 12 16 16 F 1.35101 * 120.36485 * 179.97438 * 15 14 13 17 17 C 1.34660 * 119.62847 * 270.25982 * 11 10 9 18 18 O 1.22078 * 119.99916 * 0.02562 * 17 11 10 19 19 H 0.96996 * 119.99882 * 359.97438 * 1 2 3 20 20 H 1.09001 * 109.47244 * 59.99954 * 9 7 2 21 21 H 1.09005 * 109.47216 * 300.00058 * 9 7 2 22 22 H 1.09001 * 109.47248 * 59.99648 * 10 9 7 23 23 H 1.08998 * 109.47160 * 299.99490 * 10 9 7 24 24 H 1.08002 * 119.63459 * 359.97438 * 12 11 10 25 25 H 1.08001 * 120.01081 * 180.25856 * 13 12 11 26 26 H 1.08000 * 120.37427 * 180.02562 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 7 1.5129 -4.9308 0.0001 12 6 1.1767 -5.5127 -1.1807 13 6 0.5057 -6.6871 -1.2064 14 6 0.1445 -7.3143 -0.0052 15 6 0.4770 -6.7263 1.1807 16 9 0.1396 -7.3108 2.3511 17 6 1.1759 -5.5043 1.1709 18 8 1.4803 -4.9668 2.2238 19 1 -0.4850 0.8400 0.0004 20 1 0.6241 -2.5567 -0.8903 21 1 0.6248 -2.5571 0.8897 22 1 2.8721 -3.6043 0.8894 23 1 2.8720 -3.6044 -0.8905 24 1 1.4520 -5.0346 -2.1091 25 1 0.2480 -7.1414 -2.1518 26 1 -0.3909 -8.2522 -0.0183 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335454065.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:53 Heat of formation + Delta-G solvation = -55.306700 kcal Electronic energy + Delta-G solvation = -13453.596327 eV Core-core repulsion = 10833.184540 eV Total energy + Delta-G solvation = -2620.411787 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.075 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -48.54116 -40.88923 -36.69160 -34.78201 -32.88829 -29.94910 -29.38594 -25.62855 -23.54700 -22.87015 -21.07348 -17.87562 -17.51112 -16.64690 -16.45465 -15.88064 -14.84381 -14.66390 -14.39822 -14.14875 -13.85708 -12.96629 -12.53897 -12.38719 -11.98459 -11.91086 -11.39968 -11.04439 -10.79688 -10.20859 -10.18444 -9.69452 -9.35777 -9.27142 -8.48938 -7.61096 -6.13066 -4.18079 0.88782 1.97003 2.88683 3.25399 3.33429 3.36854 3.73378 4.35796 4.42903 4.76370 4.82347 5.13480 5.23731 5.44036 5.74322 5.97968 6.10779 6.14881 6.26968 6.47718 6.67351 7.21979 7.44334 7.58998 7.82653 8.15837 8.26313 8.87330 9.47119 10.98408 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.053628 B = 0.007295 C = 0.006936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.990112 B = 3837.476476 C = 4035.951699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.526 4.526 8 H 0.061 0.939 9 C 0.013 3.987 10 C 0.090 3.910 11 N -0.476 5.476 12 C 0.149 3.851 13 C -0.238 4.238 14 C -0.052 4.052 15 C -0.042 4.042 16 F -0.124 7.124 17 C 0.498 3.502 18 O -0.530 6.530 19 H 0.263 0.737 20 H 0.022 0.978 21 H 0.027 0.973 22 H 0.092 0.908 23 H 0.085 0.915 24 H 0.167 0.833 25 H 0.149 0.851 26 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.444 -12.490 -5.433 13.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.564 4.564 8 H 0.079 0.921 9 C -0.025 4.025 10 C -0.029 4.029 11 N -0.184 5.184 12 C 0.018 3.982 13 C -0.261 4.261 14 C -0.074 4.074 15 C -0.065 4.065 16 F -0.103 7.103 17 C 0.297 3.703 18 O -0.410 6.410 19 H 0.072 0.928 20 H 0.040 0.960 21 H 0.045 0.955 22 H 0.111 0.889 23 H 0.103 0.897 24 H 0.184 0.816 25 H 0.167 0.833 26 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 1.528 -11.978 -4.672 12.947 hybrid contribution 0.163 0.774 0.115 0.800 sum 1.691 -11.203 -4.557 12.212 Atomic orbital electron populations 1.69979 1.06176 1.26915 1.49810 1.25005 0.94880 0.99488 0.94802 0.86433 0.80029 0.83247 0.77693 1.19570 1.20896 1.20837 1.21014 0.93131 0.90199 1.52074 0.92118 1.19436 0.94073 0.90603 0.98383 1.22618 0.96368 0.80236 1.03707 1.45854 1.45001 1.22080 1.05515 1.22146 0.92822 0.92890 0.90303 1.20323 1.09291 0.97977 0.98495 1.21400 0.95624 0.99452 0.90973 1.18206 1.09565 0.96309 0.82463 1.91470 1.90585 1.82458 1.45793 1.16871 0.82992 0.86157 0.84319 1.91025 1.55805 1.64906 1.29305 0.92758 0.95987 0.95452 0.88935 0.89690 0.81572 0.83298 0.84212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.43 13.29 55.43 0.74 -25.69 15 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 15 3 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 15 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 15 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 15 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 15 7 C -0.53 -14.37 9.11 -34.44 -0.31 -14.68 15 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 15 9 C 0.01 0.32 5.30 -27.88 -0.15 0.17 15 10 C 0.09 1.78 5.27 -4.04 -0.02 1.76 15 11 N -0.48 -8.46 2.59 -119.68 -0.31 -8.77 15 12 C 0.15 1.93 10.28 -16.82 -0.17 1.75 15 13 C -0.24 -2.60 10.01 -39.88 -0.40 -3.00 15 14 C -0.05 -0.65 10.07 -39.46 -0.40 -1.04 15 15 C -0.04 -0.72 7.32 -39.26 -0.29 -1.01 15 16 F -0.12 -2.25 17.12 2.25 0.04 -2.21 15 17 C 0.50 10.10 7.41 -15.35 -0.11 9.99 15 18 O -0.53 -13.06 16.52 4.85 0.08 -12.98 15 19 H 0.26 7.32 8.31 -40.82 -0.34 6.99 15 20 H 0.02 0.56 8.14 -51.93 -0.42 0.14 15 21 H 0.03 0.79 8.14 -51.93 -0.42 0.37 15 22 H 0.09 1.97 7.39 -51.93 -0.38 1.58 15 23 H 0.08 1.41 8.01 -51.93 -0.42 0.99 15 24 H 0.17 1.62 8.04 -52.49 -0.42 1.19 15 25 H 0.15 1.08 8.06 -52.49 -0.42 0.66 15 26 H 0.14 1.30 8.06 -52.49 -0.42 0.88 15 LS Contribution 242.49 15.07 3.65 3.65 Total: -1.00 -33.34 242.49 -5.23 -38.56 By element: Atomic # 1 Polarization: -1.82 SS G_CDS: -2.45 Total: -4.27 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: -1.95 Total: -4.46 kcal Atomic # 7 Polarization: -34.89 SS G_CDS: 0.43 Total: -34.46 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: 0.08 Total: -12.98 kcal Atomic # 9 Polarization: -2.25 SS G_CDS: 0.04 Total: -2.21 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -33.34 -5.23 -38.56 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335454065.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.743 kcal (2) G-P(sol) polarization free energy of solvation -33.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds