Wall clock time and date at job start Sun Mar 29 2020 21:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86798 * 119.99816 * 2 1 4 4 H 1.48501 * 109.47038 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47219 * 300.00341 * 3 2 1 6 6 H 1.48501 * 109.47160 * 60.00542 * 3 2 1 7 7 C 1.37874 * 119.99994 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00008 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00296 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47327 * 180.02562 * 9 7 2 11 11 N 1.46501 * 109.47090 * 179.97438 * 10 9 7 12 12 C 1.35859 * 119.62167 * 89.99730 * 11 10 9 13 13 C 1.35285 * 120.73672 * 179.69903 * 12 11 10 14 14 C 1.40246 * 119.97905 * 0.27916 * 13 12 11 15 15 C 1.36475 * 119.26242 * 0.02562 * 14 13 12 16 16 F 1.35101 * 120.36485 * 179.97438 * 15 14 13 17 17 C 1.34660 * 119.62847 * 270.25982 * 11 10 9 18 18 O 1.22078 * 119.99916 * 0.02562 * 17 11 10 19 19 H 0.96996 * 119.99882 * 359.97438 * 1 2 3 20 20 H 1.09001 * 109.47244 * 59.99954 * 9 7 2 21 21 H 1.09005 * 109.47216 * 300.00058 * 9 7 2 22 22 H 1.09001 * 109.47248 * 59.99648 * 10 9 7 23 23 H 1.08998 * 109.47160 * 299.99490 * 10 9 7 24 24 H 1.08002 * 119.63459 * 359.97438 * 12 11 10 25 25 H 1.08001 * 120.01081 * 180.25856 * 13 12 11 26 26 H 1.08000 * 120.37427 * 180.02562 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 7 1.5129 -4.9308 0.0001 12 6 1.1767 -5.5127 -1.1807 13 6 0.5057 -6.6871 -1.2064 14 6 0.1445 -7.3143 -0.0052 15 6 0.4770 -6.7263 1.1807 16 9 0.1396 -7.3108 2.3511 17 6 1.1759 -5.5043 1.1709 18 8 1.4803 -4.9668 2.2238 19 1 -0.4850 0.8400 0.0004 20 1 0.6241 -2.5567 -0.8903 21 1 0.6248 -2.5571 0.8897 22 1 2.8721 -3.6043 0.8894 23 1 2.8720 -3.6044 -0.8905 24 1 1.4520 -5.0346 -2.1091 25 1 0.2480 -7.1414 -2.1518 26 1 -0.3909 -8.2522 -0.0183 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335454065.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:53 Heat of formation + Delta-G solvation = -78.085584 kcal Electronic energy + Delta-G solvation = -13454.584094 eV Core-core repulsion = 10833.184540 eV Total energy + Delta-G solvation = -2621.399554 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.075 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.81527 -42.24342 -38.13868 -36.36455 -34.75446 -31.73115 -30.63219 -27.41158 -24.97695 -24.28362 -22.77902 -19.20408 -19.01111 -18.31444 -17.82645 -17.35102 -16.56996 -16.25212 -15.68361 -15.59900 -15.22131 -14.62251 -14.39479 -13.74534 -13.48717 -13.20017 -13.00690 -12.90242 -12.51215 -12.06460 -11.91417 -11.50336 -11.06812 -10.79656 -10.64280 -8.90708 -8.27238 -6.40261 -0.27169 0.76437 1.39373 1.41423 1.52495 1.56535 2.38336 2.48490 3.07858 3.22240 3.69801 3.88508 4.04602 4.16768 4.39176 4.41681 4.69306 4.97837 5.02601 5.10856 5.34225 5.39866 5.58721 5.72698 6.02255 6.07046 6.74190 6.85332 7.30372 8.85506 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.053628 B = 0.007295 C = 0.006936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.990112 B = 3837.476476 C = 4035.951699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.972 3.028 4 H -0.257 1.257 5 H -0.272 1.272 6 H -0.286 1.286 7 C -0.543 4.543 8 H 0.072 0.928 9 C 0.022 3.978 10 C 0.105 3.895 11 N -0.480 5.480 12 C 0.134 3.866 13 C -0.209 4.209 14 C -0.009 4.009 15 C -0.094 4.094 16 F -0.141 7.141 17 C 0.474 3.526 18 O -0.605 6.605 19 H 0.265 0.735 20 H 0.015 0.985 21 H -0.028 1.028 22 H 0.068 0.932 23 H 0.128 0.872 24 H 0.207 0.793 25 H 0.207 0.793 26 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.955 -13.611 -8.528 16.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.796 3.204 4 H -0.180 1.180 5 H -0.197 1.197 6 H -0.212 1.212 7 C -0.581 4.581 8 H 0.091 0.909 9 C -0.016 4.016 10 C -0.015 4.015 11 N -0.187 5.187 12 C 0.007 3.993 13 C -0.231 4.231 14 C -0.032 4.032 15 C -0.117 4.117 16 F -0.120 7.120 17 C 0.276 3.724 18 O -0.492 6.492 19 H 0.074 0.926 20 H 0.033 0.967 21 H -0.010 1.010 22 H 0.087 0.913 23 H 0.146 0.854 24 H 0.224 0.776 25 H 0.224 0.776 26 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 2.038 -13.142 -7.829 15.433 hybrid contribution -0.067 1.010 0.927 1.373 sum 1.972 -12.133 -6.902 14.097 Atomic orbital electron populations 1.70117 1.08067 1.28023 1.51093 1.26012 0.95735 1.03667 0.94271 0.85293 0.79218 0.78190 0.77697 1.18013 1.19735 1.21184 1.21504 0.93948 0.91258 1.51407 0.90946 1.19223 0.94355 0.92725 0.95268 1.22228 0.95008 0.79667 1.04594 1.45748 1.44941 1.21371 1.06654 1.23068 0.92765 0.93827 0.89672 1.21094 1.05765 0.96263 0.99943 1.22013 0.92017 0.99783 0.89365 1.18328 1.12994 0.96593 0.83802 1.91414 1.91074 1.82504 1.46994 1.17540 0.83332 0.87303 0.84185 1.90957 1.59445 1.67105 1.31727 0.92610 0.96673 1.00971 0.91322 0.85362 0.77624 0.77593 0.79812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.72 13.29 21.45 0.28 -56.43 15 2 C 0.00 0.08 5.46 84.65 0.46 0.55 15 3 Si 0.97 43.52 29.54 68.60 2.03 45.55 15 4 H -0.26 -10.77 7.11 99.48 0.71 -10.07 15 5 H -0.27 -11.63 7.11 99.48 0.71 -10.92 15 6 H -0.29 -12.87 7.11 99.48 0.71 -12.16 15 7 C -0.54 -30.04 9.11 25.60 0.23 -29.81 15 8 H 0.07 3.74 7.74 -2.91 -0.02 3.72 15 9 C 0.02 1.14 5.30 29.85 0.16 1.30 15 10 C 0.11 4.20 5.27 86.38 0.46 4.66 15 11 N -0.48 -16.89 2.59 -650.68 -1.68 -18.57 15 12 C 0.13 2.96 10.28 83.39 0.86 3.82 15 13 C -0.21 -3.37 10.01 22.08 0.22 -3.15 15 14 C -0.01 -0.19 10.07 22.35 0.23 0.04 15 15 C -0.09 -3.23 7.32 22.48 0.16 -3.07 15 16 F -0.14 -5.29 17.12 44.97 0.77 -4.52 15 17 C 0.47 20.08 7.41 84.88 0.63 20.71 15 18 O -0.60 -32.51 16.52 -5.57 -0.09 -32.61 15 19 H 0.27 15.08 8.31 -92.71 -0.77 14.31 15 20 H 0.01 0.78 8.14 -2.39 -0.02 0.77 15 21 H -0.03 -1.77 8.14 -2.38 -0.02 -1.79 15 22 H 0.07 3.07 7.39 -2.39 -0.02 3.05 15 23 H 0.13 3.96 8.01 -2.39 -0.02 3.94 15 24 H 0.21 2.86 8.04 -2.91 -0.02 2.83 15 25 H 0.21 1.17 8.06 -2.91 -0.02 1.14 15 26 H 0.18 2.31 8.06 -2.91 -0.02 2.28 15 Total: -1.00 -80.31 242.49 5.89 -74.42 By element: Atomic # 1 Polarization: -4.08 SS G_CDS: 1.18 Total: -2.89 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: 3.41 Total: -4.95 kcal Atomic # 7 Polarization: -73.60 SS G_CDS: -1.40 Total: -75.00 kcal Atomic # 8 Polarization: -32.51 SS G_CDS: -0.09 Total: -32.61 kcal Atomic # 9 Polarization: -5.29 SS G_CDS: 0.77 Total: -4.52 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -80.31 5.89 -74.42 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335454065.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.664 kcal (2) G-P(sol) polarization free energy of solvation -80.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds