Wall clock time and date at job start Sun Mar 29 2020 21:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50707 * 109.47106 * 2 1 4 4 N 1.30176 * 126.80397 * 275.04888 * 3 2 1 5 5 O 1.20915 * 111.60460 * 179.97438 * 4 3 2 6 6 C 1.34051 * 111.56771 * 359.76179 * 5 4 3 7 7 C 1.35449 * 106.44372 * 0.37988 * 6 5 4 8 8 C 1.50703 * 128.00629 * 179.91552 * 7 6 5 9 9 N 1.46499 * 109.46976 * 4.27470 * 8 7 6 10 10 C 1.46501 * 120.00138 * 270.54246 * 9 8 7 11 11 C 1.36941 * 120.00146 * 90.26676 * 9 8 7 12 12 H 1.07997 * 119.99940 * 337.06862 * 11 9 8 13 13 C 1.38811 * 119.99909 * 157.06824 * 11 9 8 14 14 N 1.31620 * 120.00124 * 347.02418 * 13 11 9 15 15 Si 1.86797 * 119.99851 * 167.01562 * 13 11 9 16 16 H 1.48506 * 109.47224 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.47025 * 120.00291 * 15 13 11 18 18 H 1.48501 * 109.47317 * 240.00345 * 15 13 11 19 19 H 1.08999 * 109.47253 * 299.99867 * 1 2 3 20 20 H 1.08998 * 109.47273 * 60.00010 * 1 2 3 21 21 H 1.09002 * 109.47265 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.47128 * 240.00549 * 2 1 3 23 23 H 1.09001 * 109.47493 * 120.00463 * 2 1 3 24 24 H 1.07995 * 126.77647 * 180.29419 * 6 5 4 25 25 H 1.08999 * 109.46747 * 244.27368 * 8 7 6 26 26 H 1.08998 * 109.47198 * 124.27254 * 8 7 6 27 27 H 1.08994 * 109.46944 * 264.59952 * 10 9 8 28 28 H 1.09010 * 109.46899 * 24.59397 * 10 9 8 29 29 H 1.08996 * 109.47276 * 144.59202 * 10 9 8 30 30 H 0.96997 * 119.99967 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2058 2.1867 -1.0383 5 8 2.6205 3.2777 -0.7224 6 6 2.7754 3.3807 0.6051 7 6 2.4079 2.1863 1.1278 8 6 2.3959 1.7717 2.5766 9 7 2.7608 2.9162 3.4151 10 6 4.1670 3.1669 3.7407 11 6 1.7880 3.7549 3.8899 12 1 0.8369 3.8206 3.3825 13 6 2.0244 4.5206 5.0233 14 7 3.0655 4.2630 5.7863 15 14 0.8651 5.9169 5.4657 16 1 -0.2195 5.9989 4.4546 17 1 0.2748 5.6647 6.8048 18 1 1.6179 7.1967 5.4896 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 1.8933 -0.5138 -0.8901 23 1 1.8933 -0.5139 0.8899 24 1 3.1255 4.2448 1.1501 25 1 3.1135 0.9656 2.7297 26 1 1.3982 1.4263 2.8474 27 1 4.4005 2.7232 4.7085 28 1 4.8022 2.7224 2.9744 29 1 4.3445 4.2416 3.7813 30 1 3.2309 4.7983 6.5781 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000378775770.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:22 Heat of formation + Delta-G solvation = 73.639637 kcal Electronic energy + Delta-G solvation = -13975.138067 eV Core-core repulsion = 11581.496780 eV Total energy + Delta-G solvation = -2393.641287 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -44.29770 -36.19817 -34.83544 -32.18124 -30.71285 -30.31553 -26.66939 -25.78361 -24.15859 -22.17750 -20.44857 -19.94698 -17.09909 -16.84394 -16.58285 -14.89412 -14.62641 -14.06725 -13.58958 -13.38423 -13.15592 -12.68305 -12.36644 -11.67598 -11.52334 -11.38372 -11.22905 -10.91108 -10.82089 -10.63152 -10.39407 -10.04985 -9.91906 -9.35131 -8.68092 -8.52891 -6.86639 -5.79104 -3.27704 2.12441 2.83266 3.34104 3.42392 3.44223 3.90432 4.43824 4.60036 4.95528 5.33408 5.38029 5.42940 5.48257 5.64278 5.91121 5.98500 6.04488 6.18085 6.28757 6.35357 6.41835 6.64044 6.70866 6.76808 7.29029 7.67462 7.76875 8.32661 8.82013 9.17024 9.79223 10.27946 11.25753 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.037583 B = 0.008739 C = 0.008635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.832296 B = 3203.105930 C = 3241.747727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.040 4.040 3 C 0.011 3.989 4 N -0.383 5.383 5 O 0.079 5.921 6 C -0.044 4.044 7 C -0.203 4.203 8 C 0.220 3.780 9 N -0.600 5.600 10 C 0.159 3.841 11 C -0.259 4.259 12 H 0.069 0.931 13 C 0.005 3.995 14 N -0.905 5.905 15 Si 0.903 3.097 16 H -0.278 1.278 17 H -0.290 1.290 18 H -0.289 1.289 19 H 0.061 0.939 20 H 0.053 0.947 21 H 0.060 0.940 22 H 0.073 0.927 23 H 0.084 0.916 24 H 0.216 0.784 25 H 0.052 0.948 26 H 0.064 0.936 27 H 0.034 0.966 28 H -0.001 1.001 29 H 0.042 0.958 30 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.168 -5.405 -8.059 9.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.078 4.078 3 C -0.149 4.149 4 N -0.090 5.090 5 O 0.015 5.985 6 C -0.125 4.125 7 C -0.210 4.210 8 C 0.091 3.909 9 N -0.322 5.322 10 C 0.015 3.985 11 C -0.388 4.388 12 H 0.087 0.913 13 C -0.194 4.194 14 N -0.549 5.549 15 Si 0.733 3.267 16 H -0.203 1.203 17 H -0.217 1.217 18 H -0.215 1.215 19 H 0.080 0.920 20 H 0.072 0.928 21 H 0.079 0.921 22 H 0.092 0.908 23 H 0.103 0.897 24 H 0.233 0.767 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.052 0.948 28 H 0.018 0.982 29 H 0.060 0.940 30 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -1.265 -5.452 -9.186 10.757 hybrid contribution -0.483 0.881 1.246 1.600 sum -1.747 -4.572 -7.941 9.328 Atomic orbital electron populations 1.21706 0.94380 1.01728 1.02517 1.19840 0.96144 0.88738 1.03123 1.23467 1.03184 0.98932 0.89277 1.73697 1.17307 0.93273 1.24724 1.84710 1.62105 1.27165 1.24520 1.25819 1.03191 1.01645 0.81820 1.22858 1.04332 0.93866 0.99983 1.19017 0.99221 0.89894 0.82760 1.43882 1.03458 1.27787 1.57108 1.20847 0.82277 0.99380 0.96015 1.19212 0.96175 1.17160 1.06270 0.91344 1.25030 0.97997 1.00656 0.95679 1.70079 1.29517 1.40128 1.15197 0.86210 0.80290 0.82167 0.78046 1.20261 1.21672 1.21536 0.92012 0.92769 0.92094 0.90839 0.89742 0.76741 0.92948 0.91817 0.94786 0.98247 0.93972 0.93710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.89 37.15 0.37 -1.42 16 2 C -0.04 -0.54 6.45 -27.88 -0.18 -0.72 16 3 C 0.01 0.19 6.58 -82.10 -0.54 -0.35 16 4 N -0.38 -7.05 12.07 33.42 0.40 -6.65 16 5 O 0.08 1.44 11.20 17.15 0.19 1.63 16 6 C -0.04 -0.82 11.66 29.74 0.35 -0.47 16 7 C -0.20 -3.83 6.27 -104.42 -0.65 -4.48 16 8 C 0.22 4.41 6.11 -5.19 -0.03 4.38 16 9 N -0.60 -14.37 2.34 -182.50 -0.43 -14.80 16 10 C 0.16 3.75 8.98 59.85 0.54 4.29 16 11 C -0.26 -6.83 9.65 -15.06 -0.15 -6.97 16 12 H 0.07 1.81 7.86 -52.49 -0.41 1.39 16 13 C 0.01 0.14 5.10 -17.43 -0.09 0.05 16 14 N -0.90 -25.62 10.72 55.49 0.59 -25.03 16 15 Si 0.90 21.37 29.57 -169.99 -5.03 16.34 16 16 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 17 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 20 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 21 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 23 H 0.08 1.04 8.09 -51.93 -0.42 0.62 16 24 H 0.22 3.91 7.95 -52.49 -0.42 3.49 16 25 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 26 H 0.06 1.28 8.04 -51.93 -0.42 0.86 16 27 H 0.03 0.87 7.33 -51.93 -0.38 0.49 16 28 H 0.00 -0.02 8.03 -51.92 -0.42 -0.44 16 29 H 0.04 1.05 7.35 -51.93 -0.38 0.67 16 30 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 261.53 15.07 3.94 3.94 Total: -1.00 -28.94 261.53 -4.80 -33.75 By element: Atomic # 1 Polarization: 0.62 SS G_CDS: -4.09 Total: -3.47 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: -0.39 Total: -5.71 kcal Atomic # 7 Polarization: -47.05 SS G_CDS: 0.57 Total: -46.48 kcal Atomic # 8 Polarization: 1.44 SS G_CDS: 0.19 Total: 1.63 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.34 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -28.94 -4.80 -33.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378775770.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.386 kcal (2) G-P(sol) polarization free energy of solvation -28.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds