Wall clock time and date at job start Sun Mar 29 2020 21:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50707 * 109.47106 * 2 1 4 4 N 1.30176 * 126.80397 * 275.04888 * 3 2 1 5 5 O 1.20915 * 111.60460 * 179.97438 * 4 3 2 6 6 C 1.34051 * 111.56771 * 359.76179 * 5 4 3 7 7 C 1.35449 * 106.44372 * 0.37988 * 6 5 4 8 8 C 1.50703 * 128.00629 * 179.91552 * 7 6 5 9 9 N 1.46499 * 109.46976 * 4.27470 * 8 7 6 10 10 C 1.46501 * 120.00138 * 270.54246 * 9 8 7 11 11 C 1.36941 * 120.00146 * 90.26676 * 9 8 7 12 12 H 1.07997 * 119.99940 * 337.06862 * 11 9 8 13 13 C 1.38811 * 119.99909 * 157.06824 * 11 9 8 14 14 N 1.31620 * 120.00124 * 347.02418 * 13 11 9 15 15 Si 1.86797 * 119.99851 * 167.01562 * 13 11 9 16 16 H 1.48506 * 109.47224 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.47025 * 120.00291 * 15 13 11 18 18 H 1.48501 * 109.47317 * 240.00345 * 15 13 11 19 19 H 1.08999 * 109.47253 * 299.99867 * 1 2 3 20 20 H 1.08998 * 109.47273 * 60.00010 * 1 2 3 21 21 H 1.09002 * 109.47265 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.47128 * 240.00549 * 2 1 3 23 23 H 1.09001 * 109.47493 * 120.00463 * 2 1 3 24 24 H 1.07995 * 126.77647 * 180.29419 * 6 5 4 25 25 H 1.08999 * 109.46747 * 244.27368 * 8 7 6 26 26 H 1.08998 * 109.47198 * 124.27254 * 8 7 6 27 27 H 1.08994 * 109.46944 * 264.59952 * 10 9 8 28 28 H 1.09010 * 109.46899 * 24.59397 * 10 9 8 29 29 H 1.08996 * 109.47276 * 144.59202 * 10 9 8 30 30 H 0.96997 * 119.99967 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2058 2.1867 -1.0383 5 8 2.6205 3.2777 -0.7224 6 6 2.7754 3.3807 0.6051 7 6 2.4079 2.1863 1.1278 8 6 2.3959 1.7717 2.5766 9 7 2.7608 2.9162 3.4151 10 6 4.1670 3.1669 3.7407 11 6 1.7880 3.7549 3.8899 12 1 0.8369 3.8206 3.3825 13 6 2.0244 4.5206 5.0233 14 7 3.0655 4.2630 5.7863 15 14 0.8651 5.9169 5.4657 16 1 -0.2195 5.9989 4.4546 17 1 0.2748 5.6647 6.8048 18 1 1.6179 7.1967 5.4896 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 1.8933 -0.5138 -0.8901 23 1 1.8933 -0.5139 0.8899 24 1 3.1255 4.2448 1.1501 25 1 3.1135 0.9656 2.7297 26 1 1.3982 1.4263 2.8474 27 1 4.4005 2.7232 4.7085 28 1 4.8022 2.7224 2.9744 29 1 4.3445 4.2416 3.7813 30 1 3.2309 4.7983 6.5781 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000378775770.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:22 Heat of formation + Delta-G solvation = 57.521255 kcal Electronic energy + Delta-G solvation = -13975.837013 eV Core-core repulsion = 11581.496780 eV Total energy + Delta-G solvation = -2394.340233 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -45.71825 -37.91526 -36.24339 -33.88024 -32.18363 -31.84569 -28.37365 -27.75951 -25.28669 -23.96008 -21.89767 -21.44825 -18.78975 -18.34241 -18.20976 -16.83251 -15.91470 -15.52093 -15.32066 -14.92090 -14.65996 -14.19016 -13.63364 -13.34783 -13.19590 -12.83449 -12.74313 -12.50270 -12.41776 -12.29674 -12.01495 -11.90370 -11.69353 -10.72617 -10.66993 -10.06444 -8.84243 -7.83493 -5.33582 0.68582 1.41514 1.46411 1.49553 1.58430 2.44588 2.51257 3.29670 3.34814 3.52391 3.89313 4.30252 4.35650 4.43074 4.54071 4.60229 4.76514 4.87980 4.94758 5.01323 5.07754 5.20164 5.24389 5.36183 5.38783 5.65811 5.73836 6.32524 7.15017 7.39705 7.84859 8.28624 9.19853 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.037583 B = 0.008739 C = 0.008635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.832296 B = 3203.105930 C = 3241.747727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.043 4.043 3 C 0.021 3.979 4 N -0.397 5.397 5 O 0.073 5.927 6 C -0.044 4.044 7 C -0.217 4.217 8 C 0.224 3.776 9 N -0.612 5.612 10 C 0.174 3.826 11 C -0.258 4.258 12 H 0.067 0.933 13 C -0.046 4.046 14 N -0.934 5.934 15 Si 0.963 3.037 16 H -0.270 1.270 17 H -0.293 1.293 18 H -0.291 1.291 19 H 0.048 0.952 20 H 0.045 0.955 21 H 0.089 0.911 22 H 0.089 0.911 23 H 0.099 0.901 24 H 0.215 0.785 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.009 0.991 28 H 0.028 0.972 29 H 0.020 0.980 30 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.842 -6.278 -8.903 11.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.081 4.081 3 C -0.139 4.139 4 N -0.106 5.106 5 O 0.012 5.988 6 C -0.124 4.124 7 C -0.223 4.223 8 C 0.097 3.903 9 N -0.335 5.335 10 C 0.030 3.970 11 C -0.388 4.388 12 H 0.085 0.915 13 C -0.241 4.241 14 N -0.581 5.581 15 Si 0.791 3.209 16 H -0.194 1.194 17 H -0.220 1.220 18 H -0.218 1.218 19 H 0.067 0.933 20 H 0.064 0.936 21 H 0.108 0.892 22 H 0.107 0.893 23 H 0.118 0.882 24 H 0.232 0.768 25 H 0.087 0.913 26 H 0.082 0.918 27 H 0.027 0.973 28 H 0.047 0.953 29 H 0.039 0.961 30 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -1.945 -6.328 -10.062 12.044 hybrid contribution -0.275 1.088 1.446 1.830 sum -2.219 -5.240 -8.615 10.325 Atomic orbital electron populations 1.21683 0.93448 1.03335 1.01438 1.20068 0.96845 0.86537 1.04654 1.23968 1.01645 1.00225 0.88101 1.73698 1.18167 0.93468 1.25230 1.84709 1.62429 1.27421 1.24208 1.25858 1.02854 1.01638 0.82100 1.22692 1.05513 0.94476 0.99638 1.19059 0.99662 0.89021 0.82589 1.44037 1.03159 1.28803 1.57478 1.20591 0.82805 0.97937 0.95696 1.19410 0.96403 1.17195 1.05790 0.91549 1.25698 0.99555 1.02886 0.96007 1.70220 1.31137 1.41094 1.15620 0.85276 0.78677 0.79402 0.77504 1.19419 1.22035 1.21766 0.93313 0.93578 0.89204 0.89278 0.88248 0.76838 0.91251 0.91796 0.97312 0.95305 0.96150 0.94202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 9.89 71.98 0.71 -2.38 16 2 C -0.04 -1.03 6.45 29.85 0.19 -0.84 16 3 C 0.02 0.67 6.58 43.58 0.29 0.95 16 4 N -0.40 -13.94 12.07 -49.56 -0.60 -14.54 16 5 O 0.07 2.60 11.20 71.54 0.80 3.40 16 6 C -0.04 -1.58 11.66 67.17 0.78 -0.79 16 7 C -0.22 -7.78 6.27 -19.73 -0.12 -7.90 16 8 C 0.22 8.60 6.11 85.63 0.52 9.12 16 9 N -0.61 -28.83 2.34 -731.31 -1.71 -30.54 16 10 C 0.17 8.15 8.98 127.77 1.15 9.30 16 11 C -0.26 -13.46 9.65 84.03 0.81 -12.65 16 12 H 0.07 3.45 7.86 -2.91 -0.02 3.42 16 13 C -0.05 -2.47 5.10 84.86 0.43 -2.04 16 14 N -0.93 -53.36 10.72 21.65 0.23 -53.12 16 15 Si 0.96 43.91 29.57 68.60 2.03 45.94 16 16 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 17 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 18 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 19 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 20 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 21 H 0.09 1.45 8.14 -2.39 -0.02 1.44 16 22 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 23 H 0.10 2.10 8.09 -2.39 -0.02 2.08 16 24 H 0.22 7.67 7.95 -2.91 -0.02 7.64 16 25 H 0.07 2.43 8.08 -2.39 -0.02 2.41 16 26 H 0.06 2.45 8.04 -2.39 -0.02 2.43 16 27 H 0.01 0.44 7.33 -2.39 -0.02 0.43 16 28 H 0.03 1.15 8.03 -2.38 -0.02 1.13 16 29 H 0.02 1.01 7.35 -2.39 -0.02 0.99 16 30 H 0.25 13.84 8.31 -92.71 -0.77 13.07 16 Total: -1.00 -60.02 261.53 6.63 -53.38 By element: Atomic # 1 Polarization: 1.59 SS G_CDS: 1.11 Total: 2.71 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: 4.77 Total: -7.23 kcal Atomic # 7 Polarization: -96.13 SS G_CDS: -2.08 Total: -98.20 kcal Atomic # 8 Polarization: 2.60 SS G_CDS: 0.80 Total: 3.40 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -60.02 6.63 -53.38 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378775770.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.905 kcal (2) G-P(sol) polarization free energy of solvation -60.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds