Wall clock time and date at job start Sun Mar 29 2020 21:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86802 * 119.99883 * 2 1 4 4 H 1.48498 * 109.47207 * 274.98846 * 3 2 1 5 5 H 1.48508 * 109.46946 * 34.98964 * 3 2 1 6 6 H 1.48496 * 109.46906 * 154.98395 * 3 2 1 7 7 C 1.40047 * 120.00016 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99767 * 186.14629 * 7 2 1 9 9 C 1.46372 * 119.99809 * 6.14591 * 7 2 1 10 10 O 1.21689 * 120.00596 * 353.93973 * 9 7 2 11 11 N 1.34783 * 119.99538 * 173.94212 * 9 7 2 12 12 C 1.46503 * 119.99590 * 179.97438 * 11 9 7 13 13 C 1.53000 * 109.46917 * 179.97438 * 12 11 9 14 14 N 1.46900 * 109.47121 * 180.02562 * 13 12 11 15 15 C 1.48226 * 111.00030 * 170.00065 * 14 13 12 16 16 C 1.51117 * 105.44132 * 144.85195 * 15 14 13 17 17 C 1.31116 * 109.36914 * 343.14189 * 16 15 14 18 18 C 1.48224 * 111.00023 * 283.63654 * 14 13 12 19 19 H 0.96999 * 120.00003 * 359.97438 * 1 2 3 20 20 H 0.96996 * 120.00247 * 0.02562 * 11 9 7 21 21 H 1.09005 * 109.47295 * 60.00239 * 12 11 9 22 22 H 1.08995 * 109.47217 * 300.00043 * 12 11 9 23 23 H 1.08997 * 109.47128 * 59.99895 * 13 12 11 24 24 H 1.09001 * 109.47471 * 300.00483 * 13 12 11 25 25 H 1.09000 * 110.26749 * 263.87080 * 15 14 13 26 26 H 1.09004 * 110.26611 * 25.83317 * 15 14 13 27 27 H 1.08004 * 125.27299 * 163.07427 * 16 15 14 28 28 H 1.08000 * 125.24763 * 179.97438 * 17 16 15 29 29 H 1.09000 * 110.26792 * 334.07452 * 18 14 13 30 30 H 1.09000 * 110.26539 * 96.03909 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 2.3828 2.1073 -1.3947 5 1 1.4948 2.6200 0.8029 6 1 3.5870 1.4121 0.5920 7 6 2.0070 -1.2128 -0.0005 8 1 3.0824 -1.2155 0.0996 9 6 1.2814 -2.4767 -0.1368 10 8 0.0646 -2.4827 -0.1387 11 7 1.9612 -3.6340 -0.2602 12 6 1.2350 -4.8991 -0.3960 13 6 2.2350 -6.0505 -0.5191 14 7 1.5068 -7.3190 -0.6560 15 6 2.4273 -8.4237 -1.0158 16 6 1.8868 -9.6445 -0.3079 17 6 1.0546 -9.2687 0.6331 18 6 0.9593 -7.7606 0.6487 19 1 -0.4850 0.8400 0.0004 20 1 2.9311 -3.6294 -0.2582 21 1 0.6092 -4.8649 -1.2879 22 1 0.6080 -5.0542 0.4820 23 1 2.8611 -6.0849 0.3724 24 1 2.8617 -5.8952 -1.3973 25 1 2.4251 -8.5808 -2.0944 26 1 3.4367 -8.2022 -0.6692 27 1 2.1453 -10.6667 -0.5419 28 1 0.5211 -9.9342 1.2956 29 1 1.5550 -7.3531 1.4656 30 1 -0.0801 -7.4476 0.7474 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379386309.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:04 Heat of formation + Delta-G solvation = -6.953534 kcal Electronic energy + Delta-G solvation = -13313.242997 eV Core-core repulsion = 10916.106927 eV Total energy + Delta-G solvation = -2397.136070 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.44540 -37.19920 -34.09537 -32.45679 -31.56884 -28.49283 -27.73027 -25.76210 -22.68241 -20.93352 -19.73791 -19.27776 -17.20070 -16.35246 -15.48181 -15.16074 -14.45886 -14.34253 -13.84968 -13.35486 -12.79895 -12.61789 -12.34247 -12.17200 -11.85601 -11.33088 -11.18761 -11.07455 -10.94678 -10.57440 -10.40001 -10.19036 -9.55253 -8.82151 -8.30303 -7.58491 -7.46500 -6.16699 -4.60930 2.04494 3.15814 3.22616 3.26234 3.88452 4.16148 4.60602 4.62395 4.65000 5.13872 5.25652 5.32400 5.44045 5.48302 5.52600 5.63648 5.78614 5.83362 5.91921 6.24278 6.46157 6.61166 6.61761 6.87224 7.04352 7.46273 7.95896 8.13185 8.35933 9.05185 9.56804 10.63132 10.81766 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.090175 B = 0.005392 C = 0.005212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 310.434285 B = 5191.807949 C = 5371.021719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.088 3.912 3 Si 0.908 3.092 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.547 4.547 8 H 0.068 0.932 9 C 0.555 3.445 10 O -0.580 6.580 11 N -0.769 5.769 12 C 0.140 3.860 13 C 0.036 3.964 14 N -0.500 5.500 15 C 0.052 3.948 16 C -0.175 4.175 17 C -0.165 4.165 18 C 0.048 3.952 19 H 0.268 0.732 20 H 0.378 0.622 21 H 0.057 0.943 22 H 0.046 0.954 23 H 0.041 0.959 24 H 0.078 0.922 25 H 0.085 0.915 26 H 0.056 0.944 27 H 0.133 0.867 28 H 0.134 0.866 29 H 0.060 0.940 30 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.238 -14.032 0.226 15.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.132 4.132 3 Si 0.733 3.267 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.584 4.584 8 H 0.086 0.914 9 C 0.359 3.641 10 O -0.463 6.463 11 N -0.425 5.425 12 C 0.015 3.985 13 C -0.092 4.092 14 N -0.224 5.224 15 C -0.075 4.075 16 C -0.193 4.193 17 C -0.183 4.183 18 C -0.079 4.079 19 H 0.079 0.921 20 H 0.210 0.790 21 H 0.075 0.925 22 H 0.065 0.935 23 H 0.059 0.941 24 H 0.096 0.904 25 H 0.104 0.896 26 H 0.074 0.926 27 H 0.151 0.849 28 H 0.151 0.849 29 H 0.078 0.922 30 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.720 -13.804 -0.191 14.590 hybrid contribution 1.583 0.592 0.613 1.798 sum 6.303 -13.212 0.422 14.645 Atomic orbital electron populations 1.70035 1.07091 1.27230 1.35344 1.25708 0.94587 1.00283 0.92621 0.86361 0.80196 0.81518 0.78664 1.19801 1.20466 1.18925 1.20884 0.94073 0.89605 1.53856 0.91410 1.18220 0.87157 0.82333 0.76420 1.90601 1.14104 1.86409 1.55168 1.46102 1.08508 1.05845 1.82062 1.20699 0.93715 0.83067 1.01060 1.22586 0.96096 0.89648 1.00904 1.65526 1.29549 1.01651 1.25709 1.22064 0.95135 0.89269 1.01066 1.23587 0.99029 0.98726 0.97978 1.23670 0.99075 0.96517 0.99055 1.22181 1.02112 0.92377 0.91227 0.92126 0.79048 0.92500 0.93520 0.94107 0.90371 0.89639 0.92641 0.84885 0.84863 0.92233 0.89203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.46 11.85 55.55 0.66 -22.80 16 2 C 0.09 2.49 5.49 -17.36 -0.10 2.39 16 3 Si 0.91 20.34 29.56 -169.99 -5.03 15.32 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 6 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 7 C -0.55 -15.73 9.53 -35.63 -0.34 -16.07 16 8 H 0.07 1.78 7.85 -52.49 -0.41 1.36 16 9 C 0.56 16.25 7.74 -12.99 -0.10 16.15 16 10 O -0.58 -19.39 15.05 5.20 0.08 -19.31 16 11 N -0.77 -17.70 5.55 -61.72 -0.34 -18.05 16 12 C 0.14 2.83 5.81 -4.04 -0.02 2.81 16 13 C 0.04 0.55 4.77 -3.82 -0.02 0.53 16 14 N -0.50 -7.18 5.52 -234.69 -1.30 -8.47 16 15 C 0.05 0.60 6.62 -4.04 -0.03 0.58 16 16 C -0.17 -1.78 10.96 -35.85 -0.39 -2.17 16 17 C -0.16 -1.77 10.95 -35.85 -0.39 -2.16 16 18 C 0.05 0.64 6.08 -4.04 -0.02 0.61 16 19 H 0.27 7.39 8.29 -40.82 -0.34 7.05 16 20 H 0.38 7.53 8.45 -40.82 -0.35 7.18 16 21 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 22 H 0.05 1.00 7.76 -51.93 -0.40 0.60 16 23 H 0.04 0.59 7.64 -51.93 -0.40 0.19 16 24 H 0.08 1.12 8.08 -51.93 -0.42 0.70 16 25 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.06 0.60 7.79 -51.93 -0.40 0.19 16 27 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 28 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 29 H 0.06 0.78 7.49 -51.93 -0.39 0.39 16 30 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 260.70 15.07 3.93 3.93 Total: -1.00 -34.77 260.70 -7.43 -42.20 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -4.02 Total: 4.53 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: -1.41 Total: 2.67 kcal Atomic # 7 Polarization: -48.34 SS G_CDS: -0.98 Total: -49.32 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: 0.08 Total: -19.31 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.03 Total: 15.32 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -34.77 -7.43 -42.20 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379386309.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.243 kcal (2) G-P(sol) polarization free energy of solvation -34.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds