Wall clock time and date at job start Sun Mar 29 2020 21:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42900 * 109.47084 * 2 1 4 4 C 1.42897 * 113.99572 * 180.02562 * 3 2 1 5 5 H 1.09008 * 109.47403 * 329.99743 * 4 3 2 6 6 C 1.52992 * 109.47429 * 89.99977 * 4 3 2 7 7 C 1.50704 * 109.47042 * 210.00215 * 4 3 2 8 8 N 1.30483 * 125.73931 * 314.99766 * 7 4 3 9 9 C 1.34254 * 109.40195 * 180.02562 * 8 7 4 10 10 C 1.34638 * 108.27349 * 359.73004 * 9 8 7 11 11 N 1.36264 * 125.74788 * 134.99968 * 7 4 3 12 12 C 1.37569 * 126.51361 * 359.97438 * 11 7 4 13 13 H 1.07997 * 119.99852 * 339.60983 * 12 11 7 14 14 C 1.38935 * 119.99764 * 159.59859 * 12 11 7 15 15 N 1.31332 * 120.00702 * 337.84827 * 14 12 11 16 16 Si 1.86805 * 119.99642 * 157.84456 * 14 12 11 17 17 H 1.48495 * 109.47215 * 180.02562 * 16 14 12 18 18 H 1.48506 * 109.47033 * 300.00061 * 16 14 12 19 19 H 1.48498 * 109.47148 * 60.00122 * 16 14 12 20 20 H 1.09000 * 109.47568 * 59.99611 * 1 2 3 21 21 H 1.09000 * 109.47274 * 180.02562 * 1 2 3 22 22 H 1.09006 * 109.46881 * 300.00024 * 1 2 3 23 23 H 1.09000 * 109.46597 * 239.99651 * 2 1 3 24 24 H 1.09004 * 109.47092 * 120.00362 * 2 1 3 25 25 H 1.08999 * 109.47524 * 299.99727 * 6 4 3 26 26 H 1.08998 * 109.47124 * 59.99622 * 6 4 3 27 27 H 1.09001 * 109.47186 * 179.97438 * 6 4 3 28 28 H 1.07995 * 125.86019 * 180.02562 * 9 8 7 29 29 H 1.07996 * 126.57793 * 180.26577 * 10 9 8 30 30 H 0.97002 * 119.99166 * 353.89760 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4600 -0.0006 5 1 3.8636 0.6014 0.5130 6 6 3.9387 1.5005 -1.4432 7 6 3.8348 2.7262 0.7099 8 7 3.2885 3.8997 0.5459 9 6 3.9019 4.7921 1.3394 10 6 4.8641 4.1518 2.0300 11 7 4.8321 2.8383 1.6317 12 6 5.6481 1.8264 2.0819 13 1 5.3425 0.7965 1.9712 14 6 6.8656 2.1294 2.6788 15 7 7.4443 3.2841 2.4410 16 14 7.6794 0.8943 3.8198 17 1 8.9592 1.4542 4.3235 18 1 6.7785 0.6109 4.9659 19 1 7.9470 -0.3637 3.0777 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.8933 -0.5139 -0.8900 24 1 1.8934 -0.5139 0.8900 25 1 3.6466 0.5847 -1.9571 26 1 3.5061 2.3590 -1.9567 27 1 5.0253 1.5869 -1.4436 28 1 3.6613 5.8422 1.4148 29 1 5.5340 4.5882 2.7560 30 1 7.0683 3.8883 1.7818 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379395792.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:57 Heat of formation + Delta-G solvation = -2.116737 kcal Electronic energy + Delta-G solvation = -14027.335812 eV Core-core repulsion = 11630.409482 eV Total energy + Delta-G solvation = -2396.926330 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.63663 -37.64830 -34.24514 -32.26737 -30.72941 -29.76336 -27.47974 -24.98561 -23.05772 -22.22438 -20.26456 -19.37775 -18.04794 -16.06426 -15.63874 -15.27213 -14.43812 -14.10510 -13.65830 -13.12331 -13.02415 -12.47914 -12.40099 -12.24512 -11.78125 -11.61727 -11.26833 -11.15974 -11.00333 -10.46377 -10.41311 -10.18292 -9.61810 -9.16904 -8.62944 -8.42946 -7.37767 -6.95274 -4.58040 2.99027 3.10422 3.30150 3.49011 3.82879 4.04558 4.39743 4.77119 4.93922 5.25104 5.40283 5.51030 5.58462 5.63492 5.77704 5.90271 6.10838 6.18207 6.19236 6.31970 6.56415 6.63597 6.70677 6.96891 7.22806 7.64491 7.74186 7.93451 8.17358 8.66347 9.21826 9.55466 10.11609 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.030980 B = 0.010304 C = 0.008672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.602103 B = 2716.842532 C = 3227.843731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.054 3.946 3 O -0.368 6.368 4 C 0.198 3.802 5 H 0.065 0.935 6 C -0.157 4.157 7 C 0.105 3.895 8 N -0.490 5.490 9 C -0.073 4.073 10 C -0.097 4.097 11 N -0.255 5.255 12 C -0.435 4.435 13 H 0.103 0.897 14 C 0.028 3.972 15 N -0.838 5.838 16 Si 1.081 2.919 17 H -0.272 1.272 18 H -0.277 1.277 19 H -0.277 1.277 20 H 0.061 0.939 21 H 0.065 0.935 22 H 0.061 0.939 23 H 0.043 0.957 24 H 0.044 0.956 25 H 0.051 0.949 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.147 0.853 29 H 0.157 0.843 30 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.463 -6.722 -2.088 8.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.023 4.023 3 O -0.286 6.286 4 C 0.139 3.861 5 H 0.083 0.917 6 C -0.216 4.216 7 C -0.151 4.151 8 N -0.211 5.211 9 C -0.228 4.228 10 C -0.239 4.239 11 N 0.079 4.921 12 C -0.563 4.563 13 H 0.120 0.880 14 C -0.187 4.187 15 N -0.466 5.466 16 Si 0.904 3.096 17 H -0.196 1.196 18 H -0.202 1.202 19 H -0.202 1.202 20 H 0.080 0.920 21 H 0.084 0.916 22 H 0.080 0.920 23 H 0.061 0.939 24 H 0.062 0.938 25 H 0.070 0.930 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.165 0.835 29 H 0.174 0.826 30 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.840 -6.766 -1.616 7.946 hybrid contribution -0.354 -0.025 -0.384 0.523 sum -4.194 -6.791 -2.000 8.229 Atomic orbital electron populations 1.21703 0.94156 1.01516 1.03089 1.22462 0.95353 0.84991 0.99529 1.88051 1.20851 1.24792 1.94930 1.19627 0.80578 0.92020 0.93910 0.91677 1.22132 1.01515 1.01763 0.96162 1.22270 0.97872 0.95183 0.99765 1.69843 1.28027 0.98786 1.24404 1.21720 0.99925 0.98636 1.02536 1.22355 1.07433 0.85706 1.08427 1.41589 1.21039 1.07219 1.22276 1.20765 1.02504 0.88750 1.44327 0.87961 1.26786 0.93301 1.00541 0.98070 1.70638 1.38632 1.09389 1.27944 0.83352 0.76619 0.73954 0.75665 1.19645 1.20218 1.20231 0.91978 0.91629 0.91959 0.93861 0.93815 0.92974 0.91431 0.91729 0.83534 0.82561 0.89420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 10.28 37.16 0.38 -1.52 16 2 C 0.05 0.84 6.47 37.16 0.24 1.08 16 3 O -0.37 -7.63 9.97 -35.23 -0.35 -7.98 16 4 C 0.20 4.29 3.09 -27.89 -0.09 4.20 16 5 H 0.07 1.37 6.57 -51.92 -0.34 1.02 16 6 C -0.16 -2.97 9.51 37.15 0.35 -2.62 16 7 C 0.11 2.74 6.79 -154.30 -1.05 1.69 16 8 N -0.49 -13.05 11.24 -10.52 -0.12 -13.17 16 9 C -0.07 -1.85 11.85 -17.77 -0.21 -2.06 16 10 C -0.10 -2.56 9.24 -16.38 -0.15 -2.71 16 11 N -0.26 -6.92 2.84 -58.87 -0.17 -7.08 16 12 C -0.43 -11.47 9.66 -14.72 -0.14 -11.61 16 13 H 0.10 2.55 6.98 -52.49 -0.37 2.19 16 14 C 0.03 0.70 5.23 -17.51 -0.09 0.61 16 15 N -0.84 -22.62 12.62 55.49 0.70 -21.92 16 16 Si 1.08 21.56 29.97 -169.99 -5.10 16.47 16 17 H -0.27 -5.43 7.11 56.52 0.40 -5.02 16 18 H -0.28 -5.33 7.11 56.52 0.40 -4.93 16 19 H -0.28 -5.15 7.11 56.52 0.40 -4.75 16 20 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 21 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 22 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 23 H 0.04 0.59 7.87 -51.93 -0.41 0.18 16 24 H 0.04 0.66 8.09 -51.93 -0.42 0.24 16 25 H 0.05 0.81 7.87 -51.93 -0.41 0.40 16 26 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 27 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.15 3.18 8.06 -52.49 -0.42 2.76 16 29 H 0.16 4.03 6.86 -52.49 -0.36 3.67 16 30 H 0.29 8.14 6.32 -40.82 -0.26 7.89 16 LS Contribution 259.40 15.07 3.91 3.91 Total: -1.00 -30.56 259.40 -5.77 -36.33 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -3.89 Total: 6.39 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: -0.75 Total: -12.95 kcal Atomic # 7 Polarization: -42.58 SS G_CDS: 0.41 Total: -42.17 kcal Atomic # 8 Polarization: -7.63 SS G_CDS: -0.35 Total: -7.98 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.10 Total: 16.47 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -30.56 -5.77 -36.33 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379395792.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.211 kcal (2) G-P(sol) polarization free energy of solvation -30.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds