Wall clock time and date at job start Sun Mar 29 2020 21:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47437 * 2 1 4 4 H 1.09002 * 109.46802 * 304.24925 * 3 2 1 5 5 C 1.50700 * 109.47523 * 184.24216 * 3 2 1 6 6 H 1.07999 * 120.00199 * 239.99807 * 5 3 2 7 7 C 1.37877 * 119.99424 * 60.00115 * 5 3 2 8 8 N 1.31514 * 120.00460 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99665 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46832 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46868 * 119.99779 * 9 7 5 12 12 H 1.48490 * 109.47092 * 239.99780 * 9 7 5 13 13 N 1.46905 * 109.47156 * 64.24352 * 3 2 1 14 14 C 1.46900 * 111.00344 * 205.87402 * 13 3 2 15 15 C 1.50696 * 109.47554 * 174.80391 * 14 13 3 16 16 C 1.34333 * 126.16477 * 94.99578 * 15 14 13 17 17 O 1.34750 * 107.11573 * 180.02562 * 16 15 14 18 18 C 1.33967 * 107.75036 * 0.02562 * 17 16 15 19 19 N 1.30254 * 108.76503 * 0.26642 * 18 17 16 20 20 H 1.09001 * 109.47229 * 174.90164 * 1 2 3 21 21 H 1.09003 * 109.47784 * 294.90371 * 1 2 3 22 22 H 1.08997 * 109.46963 * 54.90480 * 1 2 3 23 23 H 1.09002 * 109.47477 * 239.99427 * 2 1 3 24 24 H 1.09004 * 109.46779 * 119.99759 * 2 1 3 25 25 H 0.96997 * 119.99862 * 179.97438 * 8 7 5 26 26 H 1.00894 * 111.00133 * 81.91780 * 13 3 2 27 27 H 1.09000 * 109.46779 * 54.80366 * 14 13 3 28 28 H 1.09001 * 109.46909 * 294.81093 * 14 13 3 29 29 H 1.07999 * 126.44075 * 359.97438 * 16 15 14 30 30 H 1.08002 * 125.61501 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6158 1.9778 -0.8495 5 6 3.5433 1.4438 -0.1051 6 1 4.1389 1.8918 0.6765 7 6 4.1583 0.8730 -1.1992 8 7 3.4331 0.3270 -2.1508 9 14 6.0218 0.8753 -1.3299 10 1 6.6007 1.5455 -0.1379 11 1 6.5148 -0.5238 -1.3987 12 1 6.4310 1.6052 -2.5565 13 7 1.6358 2.1048 1.2474 14 6 1.5392 3.5591 1.0640 15 6 1.0012 4.1896 2.3226 16 6 1.7310 4.7205 3.3177 17 8 0.8657 5.1721 4.2467 18 6 -0.3741 4.9125 3.8105 19 7 -0.2955 4.3157 2.6554 20 1 -0.3634 -1.0236 -0.0913 21 1 -0.3635 0.4327 0.9321 22 1 -0.3633 0.5908 -0.8408 23 1 1.8933 -0.5139 -0.8899 24 1 1.8932 -0.5138 0.8901 25 1 3.8658 -0.0741 -2.9207 26 1 2.2685 1.8765 1.9995 27 1 0.8680 3.7766 0.2332 28 1 2.5277 3.9645 0.8482 29 1 2.8086 4.7744 3.3646 30 1 -1.2881 5.1536 4.3330 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379403714.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:32 Heat of formation + Delta-G solvation = 15.677601 kcal Electronic energy + Delta-G solvation = -13670.050790 eV Core-core repulsion = 11273.896080 eV Total energy + Delta-G solvation = -2396.154710 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.03389 -36.40201 -34.59365 -32.51862 -31.27351 -29.58194 -26.71713 -24.51676 -22.50708 -22.45409 -20.68100 -19.48199 -17.27583 -16.64411 -16.28935 -14.95742 -14.82596 -14.45642 -13.81834 -13.28511 -13.14488 -12.56609 -11.98842 -11.66611 -11.23653 -11.09959 -10.92326 -10.79303 -10.64465 -10.26928 -10.11365 -9.59488 -9.52491 -9.06987 -8.64909 -8.39932 -7.26638 -6.01419 -4.15087 1.72261 2.98983 3.10044 3.24377 3.33115 3.35263 4.36910 4.40640 5.16183 5.23695 5.28094 5.71696 5.86289 6.04581 6.34032 6.35585 6.47127 6.56598 6.62276 6.77339 7.15187 7.23762 7.44254 7.59353 7.76846 8.00676 8.08247 8.11691 8.31169 8.63358 8.97772 9.52781 10.98701 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.036282 B = 0.008168 C = 0.006927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.557257 B = 3427.106469 C = 4040.957418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.105 4.105 3 C 0.215 3.785 4 H 0.034 0.966 5 C -0.548 4.548 6 H 0.054 0.946 7 C 0.068 3.932 8 N -0.883 5.883 9 Si 0.889 3.111 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.284 1.284 13 N -0.681 5.681 14 C 0.141 3.859 15 C 0.010 3.990 16 C -0.083 4.083 17 O -0.214 6.214 18 C 0.153 3.847 19 N -0.469 5.469 20 H 0.024 0.976 21 H 0.047 0.953 22 H 0.037 0.963 23 H 0.090 0.910 24 H 0.030 0.970 25 H 0.261 0.739 26 H 0.327 0.673 27 H 0.078 0.922 28 H 0.046 0.954 29 H 0.212 0.788 30 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.630 6.882 8.756 11.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.144 4.144 3 C 0.108 3.892 4 H 0.052 0.948 5 C -0.587 4.587 6 H 0.072 0.928 7 C -0.135 4.135 8 N -0.522 5.522 9 Si 0.717 3.283 10 H -0.200 1.200 11 H -0.209 1.209 12 H -0.210 1.210 13 N -0.310 5.310 14 C 0.011 3.989 15 C -0.110 4.110 16 C -0.154 4.154 17 O -0.100 6.100 18 C -0.074 4.074 19 N -0.199 5.199 20 H 0.043 0.957 21 H 0.066 0.934 22 H 0.056 0.944 23 H 0.109 0.891 24 H 0.049 0.951 25 H 0.071 0.929 26 H 0.143 0.857 27 H 0.097 0.903 28 H 0.064 0.936 29 H 0.228 0.772 30 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -4.805 6.493 8.139 11.466 hybrid contribution 2.547 0.398 0.230 2.588 sum -2.258 6.891 8.368 11.073 Atomic orbital electron populations 1.21685 0.98866 0.98216 1.00580 1.21487 0.92209 0.99033 1.01628 1.19189 0.92703 0.91299 0.86025 0.94808 1.21902 0.92651 1.38232 1.05902 0.92777 1.24938 0.98004 0.94930 0.95633 1.69890 1.34838 1.37905 1.09522 0.86593 0.86007 0.77781 0.77912 1.19951 1.20934 1.21019 1.60842 1.55438 1.04790 1.09969 1.20077 0.98256 0.89979 0.90565 1.22101 0.88150 1.01376 0.99354 1.24833 0.96510 1.04592 0.89430 1.84436 1.17642 1.63547 1.44345 1.28057 0.87423 0.99090 0.92799 1.70376 1.21312 1.15385 1.12793 0.95725 0.93370 0.94407 0.89139 0.95132 0.92868 0.85723 0.90338 0.93598 0.77181 0.74005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 9.73 37.15 0.36 -2.57 16 2 C -0.10 -2.56 5.45 -26.74 -0.15 -2.70 16 3 C 0.22 5.33 1.98 -68.86 -0.14 5.20 16 4 H 0.03 0.93 7.70 -51.93 -0.40 0.53 16 5 C -0.55 -14.52 8.47 -34.44 -0.29 -14.81 16 6 H 0.05 1.41 7.73 -52.49 -0.41 1.00 16 7 C 0.07 1.83 5.29 -17.82 -0.09 1.74 16 8 N -0.88 -24.82 11.29 55.43 0.63 -24.19 16 9 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 10 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 N -0.68 -14.58 5.72 -109.22 -0.62 -15.20 16 14 C 0.14 2.72 6.05 -4.98 -0.03 2.69 16 15 C 0.01 0.17 6.66 -82.82 -0.55 -0.38 16 16 C -0.08 -1.18 12.08 29.35 0.35 -0.83 16 17 O -0.21 -2.87 10.78 5.37 0.06 -2.82 16 18 C 0.15 1.95 13.23 52.09 0.69 2.63 16 19 N -0.47 -7.94 11.29 -11.18 -0.13 -8.07 16 20 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 21 H 0.05 1.02 7.88 -51.93 -0.41 0.61 16 22 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.09 2.43 5.97 -51.93 -0.31 2.12 16 24 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 26 H 0.33 6.86 8.45 -39.29 -0.33 6.53 16 27 H 0.08 1.59 7.92 -51.93 -0.41 1.18 16 28 H 0.05 0.87 8.11 -51.93 -0.42 0.45 16 29 H 0.21 2.36 8.06 -52.49 -0.42 1.94 16 30 H 0.24 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 261.51 15.07 3.94 3.94 Total: -1.00 -29.96 261.51 -4.93 -34.89 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -3.94 Total: 4.68 kcal Atomic # 6 Polarization: -9.18 SS G_CDS: 0.16 Total: -9.02 kcal Atomic # 7 Polarization: -47.33 SS G_CDS: -0.13 Total: -47.46 kcal Atomic # 8 Polarization: -2.87 SS G_CDS: 0.06 Total: -2.82 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -29.96 -4.93 -34.89 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379403714.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.565 kcal (2) G-P(sol) polarization free energy of solvation -29.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds