Wall clock time and date at job start Sun Mar 29 2020 21:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.46817 * 2 1 4 4 H 1.09005 * 109.47098 * 185.15773 * 3 2 1 5 5 C 1.50701 * 109.46964 * 305.15321 * 3 2 1 6 6 H 1.08001 * 119.99950 * 119.99805 * 5 3 2 7 7 C 1.37875 * 120.00225 * 300.00832 * 5 3 2 8 8 N 1.31512 * 120.00236 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00045 * 180.02562 * 7 5 3 10 10 H 1.48490 * 109.47454 * 89.99312 * 9 7 5 11 11 H 1.48504 * 109.46864 * 209.99706 * 9 7 5 12 12 H 1.48501 * 109.46894 * 329.99217 * 9 7 5 13 13 N 1.46890 * 109.47604 * 65.15885 * 3 2 1 14 14 C 1.46901 * 111.00583 * 85.89666 * 13 3 2 15 15 C 1.50695 * 109.47564 * 174.82751 * 14 13 3 16 16 C 1.34335 * 126.16339 * 95.00061 * 15 14 13 17 17 O 1.34751 * 107.10932 * 180.02562 * 16 15 14 18 18 C 1.33963 * 107.75903 * 359.97438 * 17 16 15 19 19 N 1.30260 * 108.76300 * 359.73558 * 18 17 16 20 20 H 1.09001 * 109.47342 * 294.85009 * 1 2 3 21 21 H 1.09002 * 109.46953 * 174.85195 * 1 2 3 22 22 H 1.09003 * 109.47015 * 54.85264 * 1 2 3 23 23 H 1.09005 * 109.47117 * 119.99153 * 2 1 3 24 24 H 1.08995 * 109.47808 * 239.99658 * 2 1 3 25 25 H 0.96993 * 120.00586 * 180.02562 * 8 7 5 26 26 H 1.00902 * 111.00187 * 321.94680 * 13 3 2 27 27 H 1.08998 * 109.46976 * 294.83504 * 14 13 3 28 28 H 1.09004 * 109.46501 * 54.82874 * 14 13 3 29 29 H 1.08001 * 126.44197 * 0.02562 * 16 15 14 30 30 H 1.07997 * 125.61894 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1260 1.4440 -0.0924 5 6 1.4360 2.1888 -1.1617 6 1 0.8267 3.0627 -0.9841 7 6 1.6611 1.7558 -2.4512 8 7 2.4032 0.6918 -2.6675 9 14 0.9131 2.6812 -3.8912 10 1 1.8552 3.7354 -4.3452 11 1 0.6536 1.7354 -5.0063 12 1 -0.3643 3.3083 -3.4667 13 7 1.6546 2.0982 1.2567 14 6 2.6430 1.8369 2.3116 15 6 2.2828 2.6255 3.5442 16 6 1.5714 2.1776 4.5920 17 8 1.4781 3.1943 5.4715 18 6 2.1301 4.2437 4.9535 19 7 2.6206 3.9026 3.7960 20 1 -0.3634 0.4319 0.9325 21 1 -0.3633 -1.0235 -0.0922 22 1 -0.3633 0.5916 -0.8403 23 1 1.8933 -0.5137 0.8901 24 1 1.8934 -0.5138 -0.8899 25 1 2.5619 0.3874 -3.5747 26 1 0.7319 1.8105 1.5466 27 1 2.6480 0.7732 2.5493 28 1 3.6321 2.1363 1.9648 29 1 1.1529 1.1887 4.7076 30 1 2.2359 5.2116 5.4209 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379403715.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:33 Heat of formation + Delta-G solvation = 21.078321 kcal Electronic energy + Delta-G solvation = -13714.939559 eV Core-core repulsion = 11319.019042 eV Total energy + Delta-G solvation = -2395.920517 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.07442 -36.70989 -34.67998 -32.58855 -30.99575 -29.44019 -26.62635 -24.50924 -23.18296 -22.52300 -20.83047 -19.30654 -17.40010 -16.32617 -16.06832 -15.02113 -14.85030 -14.70370 -13.77404 -13.49729 -12.89887 -12.63207 -12.38900 -11.84221 -11.51990 -10.91203 -10.88690 -10.69649 -10.50865 -10.26129 -9.98548 -9.78767 -9.57193 -9.00104 -8.69836 -8.31896 -7.21213 -5.95228 -3.96286 1.67771 2.94967 3.05994 3.35456 3.41670 3.45933 4.36107 4.48076 5.10744 5.18524 5.36556 5.62148 5.77387 5.96958 6.12321 6.28126 6.34257 6.36421 6.54821 6.57560 6.87409 7.26300 7.28068 7.51830 7.69855 7.91304 7.97689 8.29066 8.54649 8.62688 9.09391 9.67132 11.11966 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.046649 B = 0.007380 C = 0.006884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.082077 B = 3793.373899 C = 4066.442747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.146 4.146 3 C 0.216 3.784 4 H 0.035 0.965 5 C -0.487 4.487 6 H 0.062 0.938 7 C 0.057 3.943 8 N -0.897 5.897 9 Si 0.894 3.106 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.275 1.275 13 N -0.676 5.676 14 C 0.134 3.866 15 C 0.012 3.988 16 C -0.085 4.085 17 O -0.213 6.213 18 C 0.156 3.844 19 N -0.468 5.468 20 H 0.026 0.974 21 H 0.024 0.976 22 H 0.069 0.931 23 H 0.011 0.989 24 H 0.094 0.906 25 H 0.259 0.741 26 H 0.326 0.674 27 H 0.036 0.964 28 H 0.083 0.917 29 H 0.211 0.789 30 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.729 1.038 12.541 12.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.186 4.186 3 C 0.108 3.892 4 H 0.052 0.948 5 C -0.526 4.526 6 H 0.080 0.920 7 C -0.144 4.144 8 N -0.537 5.537 9 Si 0.722 3.278 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.200 1.200 13 N -0.307 5.307 14 C 0.004 3.996 15 C -0.108 4.108 16 C -0.156 4.156 17 O -0.099 6.099 18 C -0.071 4.071 19 N -0.197 5.197 20 H 0.045 0.955 21 H 0.043 0.957 22 H 0.088 0.912 23 H 0.029 0.971 24 H 0.112 0.888 25 H 0.069 0.931 26 H 0.144 0.856 27 H 0.054 0.946 28 H 0.101 0.899 29 H 0.227 0.773 30 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -1.043 1.938 11.851 12.054 hybrid contribution -0.952 -0.903 -0.180 1.324 sum -1.995 1.035 11.672 11.886 Atomic orbital electron populations 1.21603 0.97671 0.98693 1.00809 1.22125 0.95046 1.01074 1.00327 1.19250 0.96146 0.88533 0.85241 0.94751 1.21064 1.30453 1.11427 0.89615 0.92009 1.24905 0.95593 0.95172 0.98708 1.69873 1.39120 1.24037 1.20688 0.86560 0.79616 0.79536 0.82075 1.20788 1.21465 1.19967 1.60752 1.03335 1.63482 1.03163 1.20195 0.98424 0.93721 0.87251 1.21999 0.99843 0.91176 0.97815 1.24780 1.06321 0.93855 0.90671 1.84434 1.60096 1.20667 1.44715 1.28090 0.94275 0.93566 0.91132 1.70393 1.22003 1.13198 1.14061 0.95471 0.95731 0.91157 0.97069 0.88772 0.93123 0.85611 0.94641 0.89908 0.77278 0.73888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.74 9.40 37.15 0.35 -2.39 16 2 C -0.15 -3.37 5.51 -26.73 -0.15 -3.51 16 3 C 0.22 5.35 2.33 -68.87 -0.16 5.19 16 4 H 0.03 0.94 7.70 -51.93 -0.40 0.54 16 5 C -0.49 -13.34 7.25 -34.44 -0.25 -13.59 16 6 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 7 C 0.06 1.56 5.28 -17.82 -0.09 1.46 16 8 N -0.90 -25.37 11.38 55.43 0.63 -24.74 16 9 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 13 N -0.68 -14.66 6.19 -109.22 -0.68 -15.33 16 14 C 0.13 2.50 6.05 -4.98 -0.03 2.47 16 15 C 0.01 0.20 6.66 -82.81 -0.55 -0.35 16 16 C -0.09 -1.17 12.08 29.36 0.35 -0.82 16 17 O -0.21 -2.81 10.77 5.37 0.06 -2.75 16 18 C 0.16 1.99 13.23 52.10 0.69 2.67 16 19 N -0.47 -8.01 11.30 -11.18 -0.13 -8.13 16 20 H 0.03 0.51 6.63 -51.93 -0.34 0.16 16 21 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 22 H 0.07 1.64 6.85 -51.93 -0.36 1.28 16 23 H 0.01 0.23 7.50 -51.93 -0.39 -0.16 16 24 H 0.09 2.44 6.23 -51.93 -0.32 2.12 16 25 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 26 H 0.33 6.69 6.69 -39.29 -0.26 6.43 16 27 H 0.04 0.60 7.53 -51.93 -0.39 0.21 16 28 H 0.08 1.65 7.93 -51.93 -0.41 1.24 16 29 H 0.21 2.14 8.06 -52.49 -0.42 1.72 16 30 H 0.25 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 255.76 15.07 3.85 3.85 Total: -1.00 -30.75 255.76 -4.81 -35.56 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -3.69 Total: 3.86 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: 0.16 Total: -8.87 kcal Atomic # 7 Polarization: -48.04 SS G_CDS: -0.17 Total: -48.21 kcal Atomic # 8 Polarization: -2.81 SS G_CDS: 0.06 Total: -2.75 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -30.75 -4.81 -35.56 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379403715.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.640 kcal (2) G-P(sol) polarization free energy of solvation -30.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds