Wall clock time and date at job start Sun Mar 29 2020 21:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.46817 * 2 1 4 4 H 1.09005 * 109.47098 * 185.15773 * 3 2 1 5 5 C 1.50701 * 109.46964 * 305.15321 * 3 2 1 6 6 H 1.08001 * 119.99950 * 119.99805 * 5 3 2 7 7 C 1.37875 * 120.00225 * 300.00832 * 5 3 2 8 8 N 1.31512 * 120.00236 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00045 * 180.02562 * 7 5 3 10 10 H 1.48490 * 109.47454 * 89.99312 * 9 7 5 11 11 H 1.48504 * 109.46864 * 209.99706 * 9 7 5 12 12 H 1.48501 * 109.46894 * 329.99217 * 9 7 5 13 13 N 1.46890 * 109.47604 * 65.15885 * 3 2 1 14 14 C 1.46901 * 111.00583 * 85.89666 * 13 3 2 15 15 C 1.50695 * 109.47564 * 174.82751 * 14 13 3 16 16 C 1.34335 * 126.16339 * 95.00061 * 15 14 13 17 17 O 1.34751 * 107.10932 * 180.02562 * 16 15 14 18 18 C 1.33963 * 107.75903 * 359.97438 * 17 16 15 19 19 N 1.30260 * 108.76300 * 359.73558 * 18 17 16 20 20 H 1.09001 * 109.47342 * 294.85009 * 1 2 3 21 21 H 1.09002 * 109.46953 * 174.85195 * 1 2 3 22 22 H 1.09003 * 109.47015 * 54.85264 * 1 2 3 23 23 H 1.09005 * 109.47117 * 119.99153 * 2 1 3 24 24 H 1.08995 * 109.47808 * 239.99658 * 2 1 3 25 25 H 0.96993 * 120.00586 * 180.02562 * 8 7 5 26 26 H 1.00902 * 111.00187 * 321.94680 * 13 3 2 27 27 H 1.08998 * 109.46976 * 294.83504 * 14 13 3 28 28 H 1.09004 * 109.46501 * 54.82874 * 14 13 3 29 29 H 1.08001 * 126.44197 * 0.02562 * 16 15 14 30 30 H 1.07997 * 125.61894 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1260 1.4440 -0.0924 5 6 1.4360 2.1888 -1.1617 6 1 0.8267 3.0627 -0.9841 7 6 1.6611 1.7558 -2.4512 8 7 2.4032 0.6918 -2.6675 9 14 0.9131 2.6812 -3.8912 10 1 1.8552 3.7354 -4.3452 11 1 0.6536 1.7354 -5.0063 12 1 -0.3643 3.3083 -3.4667 13 7 1.6546 2.0982 1.2567 14 6 2.6430 1.8369 2.3116 15 6 2.2828 2.6255 3.5442 16 6 1.5714 2.1776 4.5920 17 8 1.4781 3.1943 5.4715 18 6 2.1301 4.2437 4.9535 19 7 2.6206 3.9026 3.7960 20 1 -0.3634 0.4319 0.9325 21 1 -0.3633 -1.0235 -0.0922 22 1 -0.3633 0.5916 -0.8403 23 1 1.8933 -0.5137 0.8901 24 1 1.8934 -0.5138 -0.8899 25 1 2.5619 0.3874 -3.5747 26 1 0.7319 1.8105 1.5466 27 1 2.6480 0.7732 2.5493 28 1 3.6321 2.1363 1.9648 29 1 1.1529 1.1887 4.7076 30 1 2.2359 5.2116 5.4209 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379403715.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:33 Heat of formation + Delta-G solvation = -3.049119 kcal Electronic energy + Delta-G solvation = -13715.985803 eV Core-core repulsion = 11319.019042 eV Total energy + Delta-G solvation = -2396.966761 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -44.14953 -38.46078 -35.97196 -34.37965 -32.70704 -30.81077 -28.44983 -26.17298 -25.00724 -23.55970 -22.06852 -21.19155 -18.64534 -17.92018 -17.42762 -16.75862 -16.42997 -15.96787 -15.39900 -14.98378 -14.58032 -14.29808 -13.99080 -13.67332 -13.07735 -12.81524 -12.58941 -12.43793 -12.11369 -11.88392 -11.67060 -11.44070 -11.33329 -10.99250 -10.42924 -9.82841 -8.93282 -8.05483 -6.13678 0.64561 1.42458 1.43955 1.53679 1.79933 2.09947 2.46318 3.23064 3.36164 3.75707 4.09772 4.15114 4.53779 4.57360 4.62528 4.67014 4.79701 4.93884 5.05864 5.11838 5.36624 5.42842 5.45538 5.72494 5.76468 5.84248 6.32432 6.67308 6.82010 6.91888 6.98637 7.53826 8.99818 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.046649 B = 0.007380 C = 0.006884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.082077 B = 3793.373899 C = 4066.442747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.138 4.138 3 C 0.222 3.778 4 H -0.003 1.003 5 C -0.501 4.501 6 H 0.048 0.952 7 C 0.014 3.986 8 N -0.920 5.920 9 Si 0.951 3.049 10 H -0.282 1.282 11 H -0.282 1.282 12 H -0.270 1.270 13 N -0.684 5.684 14 C 0.141 3.859 15 C -0.028 4.028 16 C -0.061 4.061 17 O -0.210 6.210 18 C 0.177 3.823 19 N -0.523 5.523 20 H 0.050 0.950 21 H 0.044 0.956 22 H 0.042 0.958 23 H 0.032 0.968 24 H 0.062 0.938 25 H 0.260 0.740 26 H 0.334 0.666 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.245 0.755 30 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.984 1.186 14.110 14.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.178 4.178 3 C 0.114 3.886 4 H 0.015 0.985 5 C -0.540 4.540 6 H 0.066 0.934 7 C -0.184 4.184 8 N -0.560 5.560 9 Si 0.777 3.223 10 H -0.208 1.208 11 H -0.208 1.208 12 H -0.195 1.195 13 N -0.316 5.316 14 C 0.011 3.989 15 C -0.147 4.147 16 C -0.133 4.133 17 O -0.096 6.096 18 C -0.050 4.050 19 N -0.252 5.252 20 H 0.069 0.931 21 H 0.064 0.936 22 H 0.061 0.939 23 H 0.051 0.949 24 H 0.081 0.919 25 H 0.069 0.931 26 H 0.153 0.847 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.261 0.739 30 H 0.308 0.692 Dipole moment (debyes) X Y Z Total from point charges -2.299 2.084 13.430 13.784 hybrid contribution -0.526 -0.904 -0.570 1.191 sum -2.826 1.181 12.860 13.220 Atomic orbital electron populations 1.21487 0.95848 0.99712 1.00864 1.21952 0.96587 0.99485 0.99777 1.18983 0.93632 0.89752 0.86270 0.98542 1.21272 1.30441 1.11280 0.91019 0.93394 1.25570 0.95970 0.95903 1.00932 1.69996 1.39908 1.25025 1.21096 0.85668 0.78902 0.78418 0.79313 1.20783 1.20771 1.19482 1.60582 1.04416 1.63520 1.03117 1.20025 0.96282 0.95219 0.87325 1.21760 1.02812 0.91794 0.98336 1.25266 1.04024 0.94822 0.89154 1.84486 1.59933 1.20726 1.44405 1.29084 0.91688 0.94512 0.89692 1.70319 1.24345 1.13932 1.16617 0.93124 0.93646 0.93857 0.94902 0.91929 0.93125 0.84743 0.92768 0.92553 0.73901 0.69226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.95 9.40 71.98 0.68 -4.27 16 2 C -0.14 -6.35 5.51 30.59 0.17 -6.18 16 3 C 0.22 11.23 2.33 44.17 0.10 11.34 16 4 H 0.00 -0.19 7.70 -2.38 -0.02 -0.21 16 5 C -0.50 -28.01 7.25 25.60 0.19 -27.82 16 6 H 0.05 2.75 7.81 -2.91 -0.02 2.73 16 7 C 0.01 0.81 5.28 84.65 0.45 1.25 16 8 N -0.92 -52.98 11.38 21.45 0.24 -52.74 16 9 Si 0.95 44.59 29.54 68.60 2.03 46.62 16 10 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 11 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 12 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 13 N -0.68 -29.74 6.19 -499.47 -3.09 -32.84 16 14 C 0.14 5.26 6.05 85.56 0.52 5.78 16 15 C -0.03 -0.93 6.66 41.26 0.27 -0.65 16 16 C -0.06 -1.50 12.08 66.93 0.81 -0.70 16 17 O -0.21 -4.81 10.77 -3.68 -0.04 -4.85 16 18 C 0.18 3.99 13.23 130.48 1.73 5.72 16 19 N -0.52 -17.34 11.30 -304.07 -3.43 -20.78 16 20 H 0.05 1.79 6.63 -2.39 -0.02 1.77 16 21 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 22 H 0.04 1.98 6.85 -2.39 -0.02 1.97 16 23 H 0.03 1.33 7.50 -2.38 -0.02 1.31 16 24 H 0.06 3.29 6.23 -2.39 -0.01 3.27 16 25 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 26 H 0.33 13.35 6.69 -89.69 -0.60 12.75 16 27 H 0.05 1.78 7.53 -2.39 -0.02 1.76 16 28 H 0.06 2.35 7.93 -2.38 -0.02 2.33 16 29 H 0.24 3.96 8.06 -2.91 -0.02 3.94 16 30 H 0.29 3.04 8.06 -2.91 -0.02 3.02 16 Total: -1.00 -67.77 255.76 1.15 -66.61 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: 0.54 Total: 13.50 kcal Atomic # 6 Polarization: -20.44 SS G_CDS: 4.91 Total: -15.53 kcal Atomic # 7 Polarization: -100.07 SS G_CDS: -6.28 Total: -106.35 kcal Atomic # 8 Polarization: -4.81 SS G_CDS: -0.04 Total: -4.85 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -67.77 1.15 -66.61 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379403715.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.565 kcal (2) G-P(sol) polarization free energy of solvation -67.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds