Wall clock time and date at job start Sun Mar 29 2020 22:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46500 * 119.99832 * 2 1 4 4 C 1.50693 * 109.47474 * 270.00608 * 3 2 1 5 5 N 1.34497 * 126.28727 * 269.97418 * 4 3 2 6 6 C 1.31126 * 105.61473 * 180.02562 * 5 4 3 7 7 O 1.33644 * 106.89983 * 359.97438 * 6 5 4 8 8 N 1.21297 * 109.80913 * 0.02562 * 7 6 5 9 9 C 1.34779 * 120.00052 * 180.02562 * 2 1 3 10 10 O 1.21684 * 119.99660 * 179.97438 * 9 2 1 11 11 C 1.46373 * 120.00055 * 359.97438 * 9 2 1 12 12 H 1.07998 * 119.99997 * 0.02562 * 11 9 2 13 13 C 1.40044 * 120.00028 * 179.97438 * 11 9 2 14 14 N 1.30669 * 119.99881 * 0.02562 * 13 11 9 15 15 Si 1.86804 * 120.00219 * 180.02562 * 13 11 9 16 16 H 1.48494 * 109.46684 * 90.00261 * 15 13 11 17 17 H 1.48501 * 109.47074 * 210.00488 * 15 13 11 18 18 H 1.48502 * 109.47075 * 330.00622 * 15 13 11 19 19 H 1.08998 * 109.47335 * 89.99753 * 1 2 3 20 20 H 1.09004 * 109.46504 * 209.99729 * 1 2 3 21 21 H 1.08995 * 109.47129 * 329.99356 * 1 2 3 22 22 H 1.08999 * 109.47056 * 150.00132 * 3 2 1 23 23 H 1.09003 * 109.46948 * 30.00530 * 3 2 1 24 24 H 1.08005 * 126.55289 * 180.26876 * 6 5 4 25 25 H 0.97000 * 119.99972 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7039 -1.4207 5 7 3.5203 1.3922 -2.1711 6 6 3.3240 1.9782 -3.3276 7 8 2.1540 2.6188 -3.2448 8 7 1.6695 2.4495 -2.1458 9 6 2.1390 -1.1672 -0.0005 10 8 3.3558 -1.1671 -0.0010 11 6 1.4071 -2.4349 -0.0005 12 1 0.3271 -2.4349 -0.0005 13 6 2.1074 -3.6477 -0.0016 14 7 3.4140 -3.6476 -0.0021 15 14 1.1734 -5.2655 -0.0023 16 1 0.9255 -5.6932 -1.4026 17 1 1.9763 -6.3008 0.6968 18 1 -0.1239 -5.0884 0.6982 19 1 -0.3634 0.0000 -1.0276 20 1 -0.3632 -0.8901 0.5138 21 1 -0.3633 0.8899 0.5139 22 1 3.1499 1.1384 0.5138 23 1 1.6084 2.0283 0.5139 24 1 3.9799 1.9451 -4.1850 25 1 3.8991 -4.4876 -0.0025 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379416460.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:32 Heat of formation + Delta-G solvation = 43.475861 kcal Electronic energy + Delta-G solvation = -13821.326820 eV Core-core repulsion = 11225.118528 eV Total energy + Delta-G solvation = -2596.208292 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.074 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -45.16388 -37.81209 -35.44861 -33.87552 -32.46327 -31.93110 -28.37528 -26.02490 -24.86000 -23.61152 -22.05775 -19.40026 -17.67436 -17.45931 -16.51631 -15.66155 -15.25315 -14.53679 -14.42408 -14.08874 -12.61165 -12.46677 -12.07109 -11.61838 -11.55716 -11.37680 -11.21543 -11.09234 -10.94612 -10.52507 -10.28405 -10.17130 -9.74594 -8.87770 -7.60865 -7.44084 -6.21315 -4.67636 1.57491 2.71446 3.12655 3.19541 3.22719 3.38207 4.07306 4.19927 4.51461 4.58237 4.67062 5.45064 5.67838 5.84661 5.96194 6.11394 6.24770 6.40030 6.49451 6.52086 7.42341 7.47861 8.04415 8.26810 8.60932 8.99486 9.33882 10.54391 10.72929 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.046326 B = 0.008957 C = 0.008481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.267846 B = 3125.205961 C = 3300.853455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.641 5.641 3 C 0.210 3.790 4 C 0.172 3.828 5 N -0.455 5.455 6 C 0.138 3.862 7 O 0.063 5.937 8 N -0.391 5.391 9 C 0.553 3.447 10 O -0.559 6.559 11 C -0.542 4.542 12 H 0.072 0.928 13 C 0.087 3.913 14 N -0.764 5.764 15 Si 0.908 3.092 16 H -0.272 1.272 17 H -0.279 1.279 18 H -0.264 1.264 19 H 0.029 0.971 20 H 0.077 0.923 21 H 0.044 0.956 22 H 0.104 0.896 23 H 0.083 0.917 24 H 0.257 0.743 25 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.436 7.952 -4.050 9.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.380 5.380 3 C 0.083 3.917 4 C -0.103 4.103 5 N -0.187 5.187 6 C -0.104 4.104 7 O 0.006 5.994 8 N -0.100 5.100 9 C 0.359 3.641 10 O -0.440 6.440 11 C -0.579 4.579 12 H 0.090 0.910 13 C -0.133 4.133 14 N -0.393 5.393 15 Si 0.732 3.268 16 H -0.198 1.198 17 H -0.204 1.204 18 H -0.188 1.188 19 H 0.047 0.953 20 H 0.095 0.905 21 H 0.063 0.937 22 H 0.123 0.877 23 H 0.101 0.899 24 H 0.272 0.728 25 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.118 7.882 -3.421 9.141 hybrid contribution -0.379 -0.812 -0.529 1.041 sum -3.497 7.070 -3.951 8.822 Atomic orbital electron populations 1.21450 0.81615 1.01410 0.99732 1.48193 1.05429 1.04416 1.79973 1.19322 1.00054 0.87774 0.84523 1.27021 0.86822 0.94441 1.02035 1.72060 1.24423 1.20057 1.02152 1.30514 0.88290 0.92003 0.99585 1.85231 1.30728 1.55926 1.27542 1.74581 1.21612 1.20872 0.92964 1.18365 0.87189 0.82017 0.76561 1.90637 1.13650 1.85711 1.53966 1.20984 0.93674 0.89057 1.54169 0.90964 1.25737 0.94642 1.00313 0.92635 1.70021 1.07037 1.27355 1.34876 0.86370 0.80174 0.81383 0.78846 1.19775 1.20375 1.18843 0.95285 0.90470 0.93728 0.87745 0.89901 0.72756 0.92037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.97 10.19 59.85 0.61 2.58 15 2 N -0.64 -15.03 2.86 -184.63 -0.53 -15.55 15 3 C 0.21 4.33 6.07 -5.20 -0.03 4.29 15 4 C 0.17 3.48 7.80 -156.37 -1.22 2.26 15 5 N -0.45 -9.19 11.55 -13.72 -0.16 -9.35 15 6 C 0.14 1.98 13.40 51.98 0.70 2.67 15 7 O 0.06 0.98 11.31 18.10 0.20 1.19 15 8 N -0.39 -7.19 12.16 30.87 0.38 -6.82 15 9 C 0.55 15.91 7.61 -12.99 -0.10 15.81 15 10 O -0.56 -18.10 14.60 5.20 0.08 -18.02 15 11 C -0.54 -15.36 8.74 -35.63 -0.31 -15.67 15 12 H 0.07 1.87 6.00 -52.49 -0.31 1.56 15 13 C 0.09 2.43 5.50 -17.37 -0.10 2.33 15 14 N -0.76 -22.97 11.83 55.55 0.66 -22.31 15 15 Si 0.91 20.15 29.56 -169.99 -5.02 15.13 15 16 H -0.27 -5.95 7.11 56.52 0.40 -5.54 15 17 H -0.28 -6.04 7.11 56.52 0.40 -5.64 15 18 H -0.26 -5.64 7.11 56.52 0.40 -5.24 15 19 H 0.03 0.55 8.14 -51.93 -0.42 0.13 15 20 H 0.08 1.50 6.09 -51.93 -0.32 1.18 15 21 H 0.04 0.71 7.89 -51.93 -0.41 0.30 15 22 H 0.10 2.30 7.42 -51.93 -0.39 1.92 15 23 H 0.08 1.39 7.89 -51.93 -0.41 0.98 15 24 H 0.26 2.00 8.06 -52.48 -0.42 1.58 15 25 H 0.27 7.32 8.29 -40.82 -0.34 6.99 15 LS Contribution 234.28 15.07 3.53 3.53 Total: -1.00 -36.59 234.28 -3.13 -39.73 By element: Atomic # 1 Polarization: 0.02 SS G_CDS: -1.82 Total: -1.79 kcal Atomic # 6 Polarization: 14.73 SS G_CDS: -0.45 Total: 14.28 kcal Atomic # 7 Polarization: -54.38 SS G_CDS: 0.35 Total: -54.04 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: 0.28 Total: -16.83 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -36.59 -3.13 -39.73 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379416460.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.201 kcal (2) G-P(sol) polarization free energy of solvation -36.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds