Wall clock time and date at job start Sun Mar 29 2020 22:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46500 * 119.99832 * 2 1 4 4 C 1.50693 * 109.47474 * 270.00608 * 3 2 1 5 5 N 1.34497 * 126.28727 * 269.97418 * 4 3 2 6 6 C 1.31126 * 105.61473 * 180.02562 * 5 4 3 7 7 O 1.33644 * 106.89983 * 359.97438 * 6 5 4 8 8 N 1.21297 * 109.80913 * 0.02562 * 7 6 5 9 9 C 1.34779 * 120.00052 * 180.02562 * 2 1 3 10 10 O 1.21684 * 119.99660 * 179.97438 * 9 2 1 11 11 C 1.46373 * 120.00055 * 359.97438 * 9 2 1 12 12 H 1.07998 * 119.99997 * 0.02562 * 11 9 2 13 13 C 1.40044 * 120.00028 * 179.97438 * 11 9 2 14 14 N 1.30669 * 119.99881 * 0.02562 * 13 11 9 15 15 Si 1.86804 * 120.00219 * 180.02562 * 13 11 9 16 16 H 1.48494 * 109.46684 * 90.00261 * 15 13 11 17 17 H 1.48501 * 109.47074 * 210.00488 * 15 13 11 18 18 H 1.48502 * 109.47075 * 330.00622 * 15 13 11 19 19 H 1.08998 * 109.47335 * 89.99753 * 1 2 3 20 20 H 1.09004 * 109.46504 * 209.99729 * 1 2 3 21 21 H 1.08995 * 109.47129 * 329.99356 * 1 2 3 22 22 H 1.08999 * 109.47056 * 150.00132 * 3 2 1 23 23 H 1.09003 * 109.46948 * 30.00530 * 3 2 1 24 24 H 1.08005 * 126.55289 * 180.26876 * 6 5 4 25 25 H 0.97000 * 119.99972 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7039 -1.4207 5 7 3.5203 1.3922 -2.1711 6 6 3.3240 1.9782 -3.3276 7 8 2.1540 2.6188 -3.2448 8 7 1.6695 2.4495 -2.1458 9 6 2.1390 -1.1672 -0.0005 10 8 3.3558 -1.1671 -0.0010 11 6 1.4071 -2.4349 -0.0005 12 1 0.3271 -2.4349 -0.0005 13 6 2.1074 -3.6477 -0.0016 14 7 3.4140 -3.6476 -0.0021 15 14 1.1734 -5.2655 -0.0023 16 1 0.9255 -5.6932 -1.4026 17 1 1.9763 -6.3008 0.6968 18 1 -0.1239 -5.0884 0.6982 19 1 -0.3634 0.0000 -1.0276 20 1 -0.3632 -0.8901 0.5138 21 1 -0.3633 0.8899 0.5139 22 1 3.1499 1.1384 0.5138 23 1 1.6084 2.0283 0.5139 24 1 3.9799 1.9451 -4.1850 25 1 3.8991 -4.4876 -0.0025 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379416460.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:32 Heat of formation + Delta-G solvation = 13.729618 kcal Electronic energy + Delta-G solvation = -13822.616714 eV Core-core repulsion = 11225.118528 eV Total energy + Delta-G solvation = -2597.498186 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.074 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -46.54013 -39.76359 -37.00899 -35.70877 -34.60915 -33.37211 -30.07386 -28.00008 -26.59688 -24.98312 -23.56738 -21.29838 -19.05798 -18.84690 -18.45354 -17.69394 -16.67417 -16.39134 -16.03677 -15.84124 -14.42113 -14.19431 -13.57957 -13.44445 -13.25016 -13.13491 -12.91779 -12.73710 -12.65763 -12.19986 -12.02231 -11.92496 -11.12298 -10.94279 -9.79682 -9.33872 -8.29836 -6.87036 0.29931 1.28452 1.39683 1.40660 1.55988 2.22722 2.24094 2.42756 2.81806 2.95712 3.22063 3.63182 4.15960 4.31597 4.49560 4.61776 4.79442 4.83192 4.94835 5.18491 5.34916 5.66067 6.06742 6.25862 6.85850 7.27713 7.33854 8.44416 8.65549 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.046326 B = 0.008957 C = 0.008481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.267846 B = 3125.205961 C = 3300.853455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.645 5.645 3 C 0.210 3.790 4 C 0.147 3.853 5 N -0.520 5.520 6 C 0.172 3.828 7 O 0.079 5.921 8 N -0.393 5.393 9 C 0.538 3.462 10 O -0.610 6.610 11 C -0.570 4.570 12 H 0.092 0.908 13 C 0.029 3.971 14 N -0.819 5.819 15 Si 0.996 3.004 16 H -0.264 1.264 17 H -0.272 1.272 18 H -0.247 1.247 19 H 0.029 0.971 20 H 0.073 0.927 21 H 0.083 0.917 22 H 0.077 0.923 23 H 0.120 0.880 24 H 0.317 0.683 25 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.125 7.998 -5.049 10.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.382 5.382 3 C 0.084 3.916 4 C -0.127 4.127 5 N -0.252 5.252 6 C -0.068 4.068 7 O 0.019 5.981 8 N -0.101 5.101 9 C 0.344 3.656 10 O -0.495 6.495 11 C -0.606 4.606 12 H 0.110 0.890 13 C -0.186 4.186 14 N -0.448 5.448 15 Si 0.815 3.185 16 H -0.189 1.189 17 H -0.197 1.197 18 H -0.170 1.170 19 H 0.048 0.952 20 H 0.092 0.908 21 H 0.101 0.899 22 H 0.095 0.905 23 H 0.138 0.862 24 H 0.331 0.669 25 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.856 7.978 -4.406 10.327 hybrid contribution 0.168 -0.678 -0.315 0.766 sum -4.689 7.301 -4.721 9.878 Atomic orbital electron populations 1.21594 0.79043 1.03177 1.00278 1.47988 1.07107 1.04187 1.78935 1.19369 0.99206 0.87406 0.85633 1.26797 0.87759 0.95972 1.02147 1.72021 1.25721 1.22841 1.04601 1.31645 0.87317 0.88536 0.99275 1.85199 1.31106 1.55557 1.26284 1.74545 1.21609 1.20410 0.93538 1.18716 0.86861 0.83865 0.76182 1.90587 1.15746 1.87031 1.56144 1.21521 0.94836 0.89731 1.54492 0.89027 1.26990 0.95518 1.04902 0.91239 1.70195 1.09499 1.28933 1.36204 0.85042 0.78929 0.75168 0.79322 1.18887 1.19691 1.16972 0.95206 0.90812 0.89856 0.90474 0.86183 0.66858 0.91583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.77 10.19 127.77 1.30 5.08 15 2 N -0.64 -30.32 2.86 -856.27 -2.45 -32.77 15 3 C 0.21 8.70 6.07 85.63 0.52 9.22 15 4 C 0.15 5.93 7.80 138.46 1.08 7.01 15 5 N -0.52 -20.85 11.55 -315.38 -3.64 -24.49 15 6 C 0.17 4.50 13.40 130.52 1.75 6.25 15 7 O 0.08 2.25 11.31 74.83 0.85 3.10 15 8 N -0.39 -13.83 12.16 -60.40 -0.73 -14.56 15 9 C 0.54 31.74 7.61 86.36 0.66 32.40 15 10 O -0.61 -41.25 14.60 -4.30 -0.06 -41.32 15 11 C -0.57 -32.52 8.74 24.83 0.22 -32.30 15 12 H 0.09 4.68 6.00 -2.91 -0.02 4.66 15 13 C 0.03 1.62 5.50 85.30 0.47 2.09 15 14 N -0.82 -50.55 11.83 21.83 0.26 -50.29 15 15 Si 1.00 41.08 29.56 68.60 2.03 43.11 15 16 H -0.26 -10.46 7.11 99.48 0.71 -9.75 15 17 H -0.27 -10.82 7.11 99.48 0.71 -10.11 15 18 H -0.25 -9.36 7.11 99.48 0.71 -8.66 15 19 H 0.03 1.09 8.14 -2.39 -0.02 1.07 15 20 H 0.07 2.76 6.09 -2.39 -0.01 2.74 15 21 H 0.08 2.42 7.89 -2.39 -0.02 2.40 15 22 H 0.08 3.57 7.42 -2.39 -0.02 3.56 15 23 H 0.12 3.90 7.89 -2.39 -0.02 3.88 15 24 H 0.32 3.53 8.06 -2.91 -0.02 3.51 15 25 H 0.27 15.33 8.29 -92.71 -0.77 14.56 15 Total: -1.00 -83.07 234.28 3.46 -79.61 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: 1.22 Total: 7.86 kcal Atomic # 6 Polarization: 23.75 SS G_CDS: 5.99 Total: 29.74 kcal Atomic # 7 Polarization: -115.55 SS G_CDS: -6.57 Total: -122.11 kcal Atomic # 8 Polarization: -39.00 SS G_CDS: 0.78 Total: -38.22 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.11 kcal Total: -83.07 3.46 -79.61 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379416460.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.343 kcal (2) G-P(sol) polarization free energy of solvation -83.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds