Wall clock time and date at job start Sun Mar 29 2020 21:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46899 * 109.47362 * 2 1 4 4 C 1.46905 * 110.99820 * 288.02561 * 3 2 1 5 5 C 1.50703 * 109.46899 * 160.35429 * 4 3 2 6 6 H 1.08002 * 120.00236 * 4.66661 * 5 4 3 7 7 C 1.37882 * 119.99957 * 184.65520 * 5 4 3 8 8 N 1.31515 * 119.99815 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00099 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.46993 * 90.00295 * 9 7 5 11 11 H 1.48493 * 109.46952 * 210.00604 * 9 7 5 12 12 H 1.48509 * 109.46992 * 330.00372 * 9 7 5 13 13 C 1.46902 * 111.00221 * 164.07142 * 3 2 1 14 14 C 1.50695 * 109.47007 * 293.95545 * 13 3 2 15 15 C 1.35443 * 126.77879 * 90.00182 * 14 13 3 16 16 C 1.41382 * 103.98669 * 179.97438 * 15 14 13 17 17 N 1.30167 * 106.39714 * 0.02562 * 16 15 14 18 18 O 1.20923 * 111.60314 * 359.97438 * 17 16 15 19 19 H 1.09006 * 109.47088 * 179.45365 * 1 2 3 20 20 H 1.09005 * 109.47413 * 299.45109 * 1 2 3 21 21 H 1.08997 * 109.47280 * 59.44983 * 1 2 3 22 22 H 1.09007 * 109.47291 * 240.00164 * 2 1 3 23 23 H 1.09000 * 109.47469 * 119.99925 * 2 1 3 24 24 H 1.08995 * 109.47038 * 280.35528 * 4 3 2 25 25 H 1.09004 * 109.47100 * 40.36117 * 4 3 2 26 26 H 0.96993 * 120.00013 * 179.97438 * 8 7 5 27 27 H 1.09004 * 109.46954 * 173.95522 * 13 3 2 28 28 H 1.08995 * 109.46987 * 53.95760 * 13 3 2 29 29 H 1.08003 * 128.01091 * 359.97438 * 15 14 13 30 30 H 1.08001 * 126.80235 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7950 2.0227 -1.3042 5 6 1.8463 3.5206 -1.1463 6 1 2.1020 3.9545 -0.1909 7 6 1.5671 4.3371 -2.2217 8 7 1.2555 3.8088 -3.3850 9 14 1.6314 6.1937 -2.0262 10 1 3.0017 6.6765 -2.3328 11 1 0.6640 6.8235 -2.9603 12 1 1.2794 6.5569 -0.6299 13 6 3.4385 1.4417 0.3764 14 6 3.5956 1.0059 1.8103 15 6 3.8077 -0.2554 2.2560 16 6 3.8798 -0.1139 3.6608 17 7 3.7123 1.1523 3.9117 18 8 3.5532 1.7900 2.8966 19 1 -0.3633 -1.0277 -0.0098 20 1 -0.3634 0.5053 0.8949 21 1 -0.3634 0.5223 -0.8850 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 2.5689 1.7042 -2.0025 25 1 0.8172 1.7312 -1.6876 26 1 1.0587 4.3831 -4.1414 27 1 3.8034 2.4628 0.2649 28 1 4.0127 0.7781 -0.2701 29 1 3.9004 -1.1600 1.6731 30 1 4.0410 -0.9007 4.3829 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379417216.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:47 Heat of formation + Delta-G solvation = 64.001119 kcal Electronic energy + Delta-G solvation = -13851.699287 eV Core-core repulsion = 11457.640042 eV Total energy + Delta-G solvation = -2394.059245 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -44.59575 -37.24754 -33.58816 -32.73931 -32.01933 -29.98080 -27.25937 -24.95028 -23.29143 -22.54003 -21.20899 -19.92026 -17.24608 -16.92376 -16.43534 -15.16560 -14.82813 -14.22490 -13.99622 -13.75924 -13.12406 -13.09598 -12.18851 -11.82853 -11.51124 -11.26919 -11.15995 -10.88339 -10.80393 -10.61972 -10.34956 -10.18337 -9.76318 -9.36765 -9.03746 -8.45002 -7.42024 -6.05092 -4.06585 1.77246 2.50308 3.32359 3.38963 3.43457 3.44836 4.41750 4.56714 4.79267 4.98203 5.31190 5.34935 5.52382 5.61899 5.74064 5.83648 6.01573 6.04479 6.15503 6.25910 6.35959 6.52097 6.77298 7.10506 7.22910 7.77223 8.00156 8.08336 8.44836 8.53413 9.01261 9.58180 11.05394 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.034767 B = 0.008777 C = 0.007501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.157478 B = 3189.500122 C = 3731.775658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.043 3.957 3 N -0.531 5.531 4 C 0.192 3.808 5 C -0.509 4.509 6 H 0.065 0.935 7 C 0.056 3.944 8 N -0.899 5.899 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.272 1.272 13 C 0.131 3.869 14 C 0.013 3.987 15 C -0.253 4.253 16 C -0.015 4.015 17 N -0.377 5.377 18 O 0.104 5.896 19 H 0.046 0.954 20 H 0.056 0.944 21 H 0.062 0.938 22 H 0.025 0.975 23 H 0.062 0.938 24 H -0.007 1.007 25 H 0.043 0.957 26 H 0.262 0.738 27 H 0.107 0.893 28 H 0.060 0.940 29 H 0.166 0.834 30 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.754 -8.428 7.218 11.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.085 4.085 3 N -0.257 5.257 4 C 0.068 3.932 5 C -0.547 4.547 6 H 0.083 0.917 7 C -0.145 4.145 8 N -0.539 5.539 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.196 1.196 13 C 0.002 3.998 14 C -0.052 4.052 15 C -0.275 4.275 16 C -0.194 4.194 17 N -0.080 5.080 18 O 0.039 5.961 19 H 0.065 0.935 20 H 0.075 0.925 21 H 0.081 0.919 22 H 0.043 0.957 23 H 0.080 0.920 24 H 0.010 0.990 25 H 0.060 0.940 26 H 0.071 0.929 27 H 0.125 0.875 28 H 0.077 0.923 29 H 0.183 0.817 30 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 3.391 -7.366 8.505 11.751 hybrid contribution 0.485 -0.280 -1.133 1.264 sum 3.877 -7.646 7.372 11.307 Atomic orbital electron populations 1.21727 0.95247 1.00050 1.03007 1.22135 0.96406 0.90589 0.99393 1.62154 1.13428 1.14903 1.35179 1.19840 0.96922 0.94337 0.82113 1.21190 1.46503 0.90503 0.96539 0.91663 1.24975 0.95303 0.99056 0.95166 1.69947 1.47508 1.35364 1.01090 0.86505 0.77752 0.85135 0.78129 1.20710 1.21296 1.19645 1.20535 0.92141 1.03520 0.83613 1.24874 0.98255 0.89876 0.92214 1.22518 1.11897 0.98577 0.94530 1.24934 1.03832 0.94487 0.96117 1.73870 1.18652 1.07326 1.08200 1.84841 1.65691 1.35221 1.10358 0.93540 0.92453 0.91858 0.95661 0.92002 0.98952 0.93950 0.92885 0.87486 0.92266 0.81652 0.79805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.98 37.15 0.37 -2.03 16 2 C 0.04 0.75 5.55 -3.83 -0.02 0.73 16 3 N -0.53 -10.92 4.37 -237.52 -1.04 -11.95 16 4 C 0.19 4.74 4.59 -4.97 -0.02 4.72 16 5 C -0.51 -13.85 8.61 -34.44 -0.30 -14.14 16 6 H 0.07 1.78 7.66 -52.49 -0.40 1.37 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -26.05 13.29 55.43 0.74 -25.32 16 9 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 13 C 0.13 2.35 5.35 -4.98 -0.03 2.32 16 14 C 0.01 0.21 6.41 -35.31 -0.23 -0.02 16 15 C -0.25 -3.47 9.44 -39.38 -0.37 -3.84 16 16 C -0.02 -0.21 12.17 -17.06 -0.21 -0.42 16 17 N -0.38 -6.35 12.07 30.35 0.37 -5.98 16 18 O 0.10 1.87 11.20 17.17 0.19 2.07 16 19 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 20 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 21 H 0.06 1.18 6.52 -51.93 -0.34 0.84 16 22 H 0.03 0.43 8.05 -51.93 -0.42 0.01 16 23 H 0.06 0.96 5.57 -51.93 -0.29 0.67 16 24 H -0.01 -0.19 8.00 -51.93 -0.42 -0.60 16 25 H 0.04 1.12 6.24 -51.93 -0.32 0.80 16 26 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 27 H 0.11 2.05 7.32 -51.93 -0.38 1.67 16 28 H 0.06 0.96 8.12 -51.93 -0.42 0.54 16 29 H 0.17 1.84 8.00 -52.48 -0.42 1.42 16 30 H 0.18 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 257.48 15.07 3.88 3.88 Total: -1.00 -29.47 257.48 -5.60 -35.07 By element: Atomic # 1 Polarization: 0.93 SS G_CDS: -3.81 Total: -2.89 kcal Atomic # 6 Polarization: -10.32 SS G_CDS: -0.90 Total: -11.22 kcal Atomic # 7 Polarization: -43.32 SS G_CDS: 0.06 Total: -43.26 kcal Atomic # 8 Polarization: 1.87 SS G_CDS: 0.19 Total: 2.07 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -29.47 -5.60 -35.07 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379417216.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.070 kcal (2) G-P(sol) polarization free energy of solvation -29.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds