Wall clock time and date at job start Sun Mar 29 2020 21:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46899 * 109.47362 * 2 1 4 4 C 1.46905 * 110.99820 * 288.02561 * 3 2 1 5 5 C 1.50703 * 109.46899 * 160.35429 * 4 3 2 6 6 H 1.08002 * 120.00236 * 4.66661 * 5 4 3 7 7 C 1.37882 * 119.99957 * 184.65520 * 5 4 3 8 8 N 1.31515 * 119.99815 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00099 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.46993 * 90.00295 * 9 7 5 11 11 H 1.48493 * 109.46952 * 210.00604 * 9 7 5 12 12 H 1.48509 * 109.46992 * 330.00372 * 9 7 5 13 13 C 1.46902 * 111.00221 * 164.07142 * 3 2 1 14 14 C 1.50695 * 109.47007 * 293.95545 * 13 3 2 15 15 C 1.35443 * 126.77879 * 90.00182 * 14 13 3 16 16 C 1.41382 * 103.98669 * 179.97438 * 15 14 13 17 17 N 1.30167 * 106.39714 * 0.02562 * 16 15 14 18 18 O 1.20923 * 111.60314 * 359.97438 * 17 16 15 19 19 H 1.09006 * 109.47088 * 179.45365 * 1 2 3 20 20 H 1.09005 * 109.47413 * 299.45109 * 1 2 3 21 21 H 1.08997 * 109.47280 * 59.44983 * 1 2 3 22 22 H 1.09007 * 109.47291 * 240.00164 * 2 1 3 23 23 H 1.09000 * 109.47469 * 119.99925 * 2 1 3 24 24 H 1.08995 * 109.47038 * 280.35528 * 4 3 2 25 25 H 1.09004 * 109.47100 * 40.36117 * 4 3 2 26 26 H 0.96993 * 120.00013 * 179.97438 * 8 7 5 27 27 H 1.09004 * 109.46954 * 173.95522 * 13 3 2 28 28 H 1.08995 * 109.46987 * 53.95760 * 13 3 2 29 29 H 1.08003 * 128.01091 * 359.97438 * 15 14 13 30 30 H 1.08001 * 126.80235 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7950 2.0227 -1.3042 5 6 1.8463 3.5206 -1.1463 6 1 2.1020 3.9545 -0.1909 7 6 1.5671 4.3371 -2.2217 8 7 1.2555 3.8088 -3.3850 9 14 1.6314 6.1937 -2.0262 10 1 3.0017 6.6765 -2.3328 11 1 0.6640 6.8235 -2.9603 12 1 1.2794 6.5569 -0.6299 13 6 3.4385 1.4417 0.3764 14 6 3.5956 1.0059 1.8103 15 6 3.8077 -0.2554 2.2560 16 6 3.8798 -0.1139 3.6608 17 7 3.7123 1.1523 3.9117 18 8 3.5532 1.7900 2.8966 19 1 -0.3633 -1.0277 -0.0098 20 1 -0.3634 0.5053 0.8949 21 1 -0.3634 0.5223 -0.8850 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 2.5689 1.7042 -2.0025 25 1 0.8172 1.7312 -1.6876 26 1 1.0587 4.3831 -4.1414 27 1 3.8034 2.4628 0.2649 28 1 4.0127 0.7781 -0.2701 29 1 3.9004 -1.1600 1.6731 30 1 4.0410 -0.9007 4.3829 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379417216.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:47 Heat of formation + Delta-G solvation = 44.594346 kcal Electronic energy + Delta-G solvation = -13852.540828 eV Core-core repulsion = 11457.640042 eV Total energy + Delta-G solvation = -2394.900786 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -45.77729 -38.82363 -34.94940 -34.58616 -33.34388 -31.50556 -29.06180 -26.53824 -24.63720 -24.11945 -22.48575 -21.43914 -18.66422 -18.38165 -18.13162 -16.74529 -16.43920 -15.75759 -15.51944 -15.23259 -14.52220 -14.25611 -14.07473 -13.44528 -13.03561 -12.88280 -12.73469 -12.58252 -12.38978 -12.12663 -12.06374 -11.57466 -11.35756 -11.26320 -10.57687 -10.33006 -9.06080 -8.17625 -6.26377 0.53059 1.42556 1.43264 1.44034 1.55690 2.19722 2.42938 3.14050 3.33272 3.55558 3.74849 4.17250 4.23199 4.27573 4.41313 4.59653 4.70544 4.78230 4.82658 4.96000 5.02772 5.21640 5.26385 5.28775 5.38612 5.69371 6.09364 6.31249 6.59371 6.88487 7.33185 7.42880 8.92491 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.034767 B = 0.008777 C = 0.007501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.157478 B = 3189.500122 C = 3731.775658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.043 3.957 3 N -0.546 5.546 4 C 0.208 3.792 5 C -0.523 4.523 6 H 0.058 0.942 7 C 0.006 3.994 8 N -0.932 5.932 9 Si 0.961 3.039 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.270 1.270 13 C 0.135 3.865 14 C -0.010 4.010 15 C -0.231 4.231 16 C 0.002 3.998 17 N -0.403 5.403 18 O 0.067 5.933 19 H 0.080 0.920 20 H 0.048 0.952 21 H 0.035 0.965 22 H 0.031 0.969 23 H 0.087 0.913 24 H -0.026 1.026 25 H 0.020 0.980 26 H 0.264 0.736 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.199 0.801 30 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.280 -9.731 8.371 13.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.085 4.085 3 N -0.271 5.271 4 C 0.083 3.917 5 C -0.561 4.561 6 H 0.076 0.924 7 C -0.192 4.192 8 N -0.573 5.573 9 Si 0.786 3.214 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.194 1.194 13 C 0.006 3.994 14 C -0.074 4.074 15 C -0.252 4.252 16 C -0.177 4.177 17 N -0.112 5.112 18 O 0.007 5.993 19 H 0.099 0.901 20 H 0.068 0.932 21 H 0.054 0.946 22 H 0.049 0.951 23 H 0.105 0.895 24 H -0.009 1.009 25 H 0.038 0.962 26 H 0.073 0.927 27 H 0.102 0.898 28 H 0.096 0.904 29 H 0.216 0.784 30 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 3.922 -8.661 9.646 13.544 hybrid contribution 0.346 0.013 -1.427 1.468 sum 4.268 -8.648 8.219 12.671 Atomic orbital electron populations 1.21708 0.95034 1.01739 1.01200 1.22240 0.96608 0.88866 1.00776 1.62011 1.15552 1.17064 1.32523 1.19443 0.94959 0.93511 0.83813 1.21493 1.46185 0.92159 0.96257 0.92353 1.25785 0.94940 1.03597 0.94853 1.70053 1.48430 1.36979 1.01807 0.85502 0.78109 0.79719 0.78038 1.19748 1.20788 1.19440 1.20390 0.90724 1.02878 0.85378 1.24690 1.00431 0.91028 0.91248 1.22926 1.09244 0.98283 0.94795 1.25645 1.00977 0.94170 0.96894 1.73883 1.20280 1.08950 1.08094 1.84815 1.67169 1.36346 1.10936 0.90084 0.93243 0.94610 0.95076 0.89460 1.00861 0.96215 0.92700 0.89815 0.90359 0.78418 0.75704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.54 9.98 71.98 0.72 -3.82 16 2 C 0.04 1.42 5.55 86.30 0.48 1.90 16 3 N -0.55 -22.50 4.37 -905.37 -3.96 -26.46 16 4 C 0.21 10.58 4.59 85.56 0.39 10.97 16 5 C -0.52 -29.13 8.61 25.60 0.22 -28.91 16 6 H 0.06 3.26 7.66 -2.91 -0.02 3.24 16 7 C 0.01 0.36 5.46 84.66 0.46 0.82 16 8 N -0.93 -54.95 13.29 21.45 0.28 -54.66 16 9 Si 0.96 44.28 29.54 68.60 2.03 46.31 16 10 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 12 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 13 C 0.13 4.81 5.35 85.55 0.46 5.27 16 14 C -0.01 -0.31 6.41 25.04 0.16 -0.15 16 15 C -0.23 -5.51 9.44 22.40 0.21 -5.30 16 16 C 0.00 0.04 12.17 85.71 1.04 1.08 16 17 N -0.40 -12.94 12.07 -59.28 -0.72 -13.65 16 18 O 0.07 2.41 11.20 71.62 0.80 3.21 16 19 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 20 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 21 H 0.03 1.34 6.52 -2.39 -0.02 1.33 16 22 H 0.03 1.00 8.05 -2.38 -0.02 0.98 16 23 H 0.09 2.44 5.57 -2.39 -0.01 2.43 16 24 H -0.03 -1.41 8.00 -2.39 -0.02 -1.42 16 25 H 0.02 1.09 6.24 -2.39 -0.01 1.07 16 26 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 27 H 0.08 3.32 7.32 -2.39 -0.02 3.31 16 28 H 0.08 2.46 8.12 -2.39 -0.02 2.44 16 29 H 0.20 3.35 8.00 -2.91 -0.02 3.33 16 30 H 0.23 3.22 8.06 -2.91 -0.02 3.19 16 Total: -1.00 -64.53 257.48 3.71 -60.82 By element: Atomic # 1 Polarization: 1.46 SS G_CDS: 1.12 Total: 2.58 kcal Atomic # 6 Polarization: -22.29 SS G_CDS: 4.15 Total: -18.14 kcal Atomic # 7 Polarization: -90.39 SS G_CDS: -4.39 Total: -94.77 kcal Atomic # 8 Polarization: 2.41 SS G_CDS: 0.80 Total: 3.21 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -64.53 3.71 -60.82 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379417216.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.411 kcal (2) G-P(sol) polarization free energy of solvation -64.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds