Wall clock time and date at job start Sun Mar 29 2020 22:02:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 N 1.46500 * 109.47378 * 2 1
4 4 N 1.28680 * 126.02194 * 269.97868 * 3 2 1
5 5 N 1.28467 * 110.90750 * 180.02562 * 4 3 2
6 6 C 1.33316 * 109.51928 * 359.97438 * 5 4 3
7 7 C 1.37125 * 126.01699 * 90.00397 * 3 2 1
8 8 C 1.47019 * 127.28418 * 359.71292 * 7 3 2
9 9 O 1.21575 * 119.99866 * 180.02562 * 8 7 3
10 10 O 1.34805 * 120.00047 * 0.02562 * 8 7 3
11 11 C 1.34846 * 117.00117 * 179.97438 * 10 8 7
12 12 H 1.07995 * 119.99768 * 0.02562 * 11 10 8
13 13 C 1.38816 * 120.00133 * 179.97438 * 11 10 8
14 14 N 1.31417 * 120.00134 * 0.02562 * 13 11 10
15 15 Si 1.86797 * 120.00028 * 180.02562 * 13 11 10
16 16 H 1.48499 * 109.47306 * 90.00152 * 15 13 11
17 17 H 1.48502 * 109.47154 * 210.00169 * 15 13 11
18 18 H 1.48501 * 109.47170 * 329.99950 * 15 13 11
19 19 H 1.09006 * 109.46736 * 299.99868 * 1 2 3
20 20 H 1.08998 * 109.46953 * 59.99519 * 1 2 3
21 21 H 1.08999 * 109.47029 * 179.97438 * 1 2 3
22 22 H 1.08997 * 109.47003 * 240.00182 * 2 1 3
23 23 H 1.09003 * 109.47388 * 120.00641 * 2 1 3
24 24 H 1.08004 * 126.90733 * 180.02562 * 6 5 4
25 25 H 0.97000 * 120.00142 * 179.97438 * 14 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 7 2.2711 2.0945 -1.0408
5 7 2.6849 3.2637 -0.7058
6 6 2.7184 3.3604 0.6234
7 6 2.2873 2.1414 1.1091
8 6 2.1410 1.7450 2.5173
9 8 2.4194 2.5310 3.4021
10 8 1.6983 0.5101 2.8275
11 6 1.5876 0.2105 4.1375
12 1 1.8484 0.9465 4.8836
13 6 1.1373 -1.0434 4.5272
14 7 0.8194 -1.9388 3.6193
15 14 0.9832 -1.4581 6.3420
16 1 -0.3757 -1.0960 6.8189
17 1 1.2050 -2.9134 6.5378
18 1 1.9978 -0.6948 7.1121
19 1 -0.3633 0.5138 0.8901
20 1 -0.3633 0.5139 -0.8899
21 1 -0.3633 -1.0277 -0.0005
22 1 1.8933 -0.5138 -0.8900
23 1 1.8934 -0.5139 0.8899
24 1 3.0218 4.2193 1.2038
25 1 0.5051 -2.8152 3.8916
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000382128548.mol2 25
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 22:02:19
Heat of formation + Delta-G solvation = 12.962991 kcal
Electronic energy + Delta-G solvation = -13931.114272 eV
Core-core repulsion = 11333.582843 eV
Total energy + Delta-G solvation = -2597.531430 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 211.074 amu
Computer time = 0.13 seconds
Orbital eigenvalues (eV)
-42.74563 -39.02729 -35.55591 -34.94214 -32.40029 -30.82569 -30.37356 -25.98538
-24.34447 -23.23199 -21.60740 -20.05064 -18.05614 -17.45887 -16.25774 -15.95288
-15.03452 -14.59466 -14.49160 -14.24927 -13.61305 -12.87742 -12.59117 -11.94070
-11.79422 -11.61180 -11.44694 -11.11069 -10.74157 -10.62793 -10.56800 -10.07482
-9.77741 -9.45997 -8.97457 -8.80708 -6.68949 -4.31584 1.40528 2.62428
2.72141 3.03598 3.06785 3.12411 3.68085 3.72769 4.24204 4.75569
4.91981 5.06265 5.26943 5.41779 5.60622 5.73432 5.91449 6.21167
6.39450 6.44304 6.53397 6.91594 7.16522 7.66965 8.39084 8.76270
8.81818 9.50460 10.48146
Molecular weight = 211.07amu
Principal moments of inertia in cm(-1)
A = 0.045360 B = 0.010147 C = 0.008522
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 617.140053 B = 2758.642898 C = 3284.947398
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.155 4.155
2 C 0.105 3.895
3 N -0.259 5.259
4 N -0.080 5.080
5 N -0.284 5.284
6 C 0.004 3.996
7 C -0.019 4.019
8 C 0.463 3.537
9 O -0.532 6.532
10 O -0.205 6.205
11 C -0.376 4.376
12 H 0.101 0.899
13 C 0.046 3.954
14 N -0.857 5.857
15 Si 0.947 3.053
16 H -0.271 1.271
17 H -0.277 1.277
18 H -0.265 1.265
19 H 0.070 0.930
20 H 0.055 0.945
21 H 0.086 0.914
22 H 0.100 0.900
23 H 0.132 0.868
24 H 0.198 0.802
25 H 0.274 0.726
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.554 0.171 -3.788 3.832
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.214 4.214
2 C -0.014 4.014
3 N -0.059 5.059
4 N -0.061 5.061
5 N -0.147 5.147
6 C -0.156 4.156
7 C -0.152 4.152
8 C 0.308 3.692
9 O -0.428 6.428
10 O -0.111 6.111
11 C -0.453 4.453
12 H 0.119 0.881
13 C -0.160 4.160
14 N -0.493 5.493
15 Si 0.771 3.229
16 H -0.197 1.197
17 H -0.202 1.202
18 H -0.189 1.189
19 H 0.089 0.911
20 H 0.074 0.926
21 H 0.105 0.895
22 H 0.118 0.882
23 H 0.150 0.850
24 H 0.215 0.785
25 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges -0.563 0.120 -5.094 5.127
hybrid contribution -0.150 -0.390 2.009 2.052
sum -0.713 -0.271 -3.085 3.178
Atomic orbital electron populations
1.21994 0.92674 1.04056 1.02630 1.22438 0.96985 0.75241 1.06772
1.48070 1.40244 1.13738 1.03806 1.78016 1.16557 0.99224 1.12292
1.74810 1.16962 1.10272 1.12628 1.23924 1.03313 0.97345 0.91028
1.21961 1.11116 0.93978 0.88135 1.19154 0.81290 0.83212 0.85496
1.90713 1.51634 1.53074 1.47336 1.83865 1.68874 1.28079 1.30287
1.21362 1.45182 0.99675 0.79033 0.88135 1.25372 0.95539 0.94275
1.00789 1.69916 1.39943 1.05553 1.33859 0.85597 0.79317 0.78011
0.79930 1.19694 1.20171 1.18891 0.91088 0.92616 0.89507 0.88171
0.84997 0.78512 0.91647
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.42 10.24 37.16 0.38 -2.04 15
2 C 0.11 1.75 6.60 -4.04 -0.03 1.73 15
3 N -0.26 -4.93 3.39 -57.13 -0.19 -5.13 15
4 N -0.08 -1.54 13.12 60.35 0.79 -0.74 15
5 N -0.28 -5.48 12.34 30.70 0.38 -5.11 15
6 C 0.00 0.08 11.93 -16.95 -0.20 -0.12 15
7 C -0.02 -0.41 7.02 -81.98 -0.58 -0.98 15
8 C 0.46 11.20 7.88 34.29 0.27 11.47 15
9 O -0.53 -13.87 16.18 -19.32 -0.31 -14.18 15
10 O -0.20 -5.27 7.39 -21.82 -0.16 -5.44 15
11 C -0.38 -10.15 9.65 30.95 0.30 -9.85 15
12 H 0.10 2.76 6.86 -52.49 -0.36 2.40 15
13 C 0.05 1.16 5.50 -17.52 -0.10 1.07 15
14 N -0.86 -22.05 13.67 55.49 0.76 -21.29 15
15 Si 0.95 19.55 29.55 -169.99 -5.02 14.53 15
16 H -0.27 -5.50 7.11 56.52 0.40 -5.09 15
17 H -0.28 -5.52 7.11 56.52 0.40 -5.11 15
18 H -0.26 -5.44 7.11 56.52 0.40 -5.04 15
19 H 0.07 1.29 8.14 -51.93 -0.42 0.87 15
20 H 0.05 0.79 8.14 -51.93 -0.42 0.36 15
21 H 0.09 1.22 8.14 -51.93 -0.42 0.80 15
22 H 0.10 1.36 8.14 -51.93 -0.42 0.93 15
23 H 0.13 2.53 6.32 -51.93 -0.33 2.20 15
24 H 0.20 3.16 8.06 -52.48 -0.42 2.74 15
25 H 0.27 6.50 8.31 -40.82 -0.34 6.16 15
LS Contribution 237.89 15.07 3.58 3.58
Total: -1.00 -29.21 237.89 -2.06 -31.28
By element:
Atomic # 1 Polarization: 3.16 SS G_CDS: -1.94 Total: 1.22 kcal
Atomic # 6 Polarization: 1.22 SS G_CDS: 0.05 Total: 1.26 kcal
Atomic # 7 Polarization: -34.00 SS G_CDS: 1.74 Total: -32.26 kcal
Atomic # 8 Polarization: -19.14 SS G_CDS: -0.47 Total: -19.61 kcal
Atomic # 14 Polarization: 19.55 SS G_CDS: -5.02 Total: 14.53 kcal
Total LS contribution 3.58 Total: 3.58 kcal
Total: -29.21 -2.06 -31.28 kcal
The number of atoms in the molecule is 25
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000382128548.mol2 25
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 44.243 kcal
(2) G-P(sol) polarization free energy of solvation -29.215 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.028 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.065 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.280 kcal
(6) G-S(sol) free energy of system = (1) + (5) 12.963 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.13 seconds