Wall clock time and date at job start Sun Mar 29 2020 22:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.47378 * 2 1 4 4 N 1.28680 * 126.02194 * 269.97868 * 3 2 1 5 5 N 1.28467 * 110.90750 * 180.02562 * 4 3 2 6 6 C 1.33316 * 109.51928 * 359.97438 * 5 4 3 7 7 C 1.37125 * 126.01699 * 90.00397 * 3 2 1 8 8 C 1.47019 * 127.28418 * 359.71292 * 7 3 2 9 9 O 1.21575 * 119.99866 * 180.02562 * 8 7 3 10 10 O 1.34805 * 120.00047 * 0.02562 * 8 7 3 11 11 C 1.34846 * 117.00117 * 179.97438 * 10 8 7 12 12 H 1.07995 * 119.99768 * 0.02562 * 11 10 8 13 13 C 1.38816 * 120.00133 * 179.97438 * 11 10 8 14 14 N 1.31417 * 120.00134 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00028 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47306 * 90.00152 * 15 13 11 17 17 H 1.48502 * 109.47154 * 210.00169 * 15 13 11 18 18 H 1.48501 * 109.47170 * 329.99950 * 15 13 11 19 19 H 1.09006 * 109.46736 * 299.99868 * 1 2 3 20 20 H 1.08998 * 109.46953 * 59.99519 * 1 2 3 21 21 H 1.08999 * 109.47029 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47003 * 240.00182 * 2 1 3 23 23 H 1.09003 * 109.47388 * 120.00641 * 2 1 3 24 24 H 1.08004 * 126.90733 * 180.02562 * 6 5 4 25 25 H 0.97000 * 120.00142 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2711 2.0945 -1.0408 5 7 2.6849 3.2637 -0.7058 6 6 2.7184 3.3604 0.6234 7 6 2.2873 2.1414 1.1091 8 6 2.1410 1.7450 2.5173 9 8 2.4194 2.5310 3.4021 10 8 1.6983 0.5101 2.8275 11 6 1.5876 0.2105 4.1375 12 1 1.8484 0.9465 4.8836 13 6 1.1373 -1.0434 4.5272 14 7 0.8194 -1.9388 3.6193 15 14 0.9832 -1.4581 6.3420 16 1 -0.3757 -1.0960 6.8189 17 1 1.2050 -2.9134 6.5378 18 1 1.9978 -0.6948 7.1121 19 1 -0.3633 0.5138 0.8901 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8934 -0.5139 0.8899 24 1 3.0218 4.2193 1.2038 25 1 0.5051 -2.8152 3.8916 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382128548.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:19 Heat of formation + Delta-G solvation = 12.962991 kcal Electronic energy + Delta-G solvation = -13931.114272 eV Core-core repulsion = 11333.582843 eV Total energy + Delta-G solvation = -2597.531430 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.074 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.74563 -39.02729 -35.55591 -34.94214 -32.40029 -30.82569 -30.37356 -25.98538 -24.34447 -23.23199 -21.60740 -20.05064 -18.05614 -17.45887 -16.25774 -15.95288 -15.03452 -14.59466 -14.49160 -14.24927 -13.61305 -12.87742 -12.59117 -11.94070 -11.79422 -11.61180 -11.44694 -11.11069 -10.74157 -10.62793 -10.56800 -10.07482 -9.77741 -9.45997 -8.97457 -8.80708 -6.68949 -4.31584 1.40528 2.62428 2.72141 3.03598 3.06785 3.12411 3.68085 3.72769 4.24204 4.75569 4.91981 5.06265 5.26943 5.41779 5.60622 5.73432 5.91449 6.21167 6.39450 6.44304 6.53397 6.91594 7.16522 7.66965 8.39084 8.76270 8.81818 9.50460 10.48146 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.045360 B = 0.010147 C = 0.008522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.140053 B = 2758.642898 C = 3284.947398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.105 3.895 3 N -0.259 5.259 4 N -0.080 5.080 5 N -0.284 5.284 6 C 0.004 3.996 7 C -0.019 4.019 8 C 0.463 3.537 9 O -0.532 6.532 10 O -0.205 6.205 11 C -0.376 4.376 12 H 0.101 0.899 13 C 0.046 3.954 14 N -0.857 5.857 15 Si 0.947 3.053 16 H -0.271 1.271 17 H -0.277 1.277 18 H -0.265 1.265 19 H 0.070 0.930 20 H 0.055 0.945 21 H 0.086 0.914 22 H 0.100 0.900 23 H 0.132 0.868 24 H 0.198 0.802 25 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.554 0.171 -3.788 3.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.014 4.014 3 N -0.059 5.059 4 N -0.061 5.061 5 N -0.147 5.147 6 C -0.156 4.156 7 C -0.152 4.152 8 C 0.308 3.692 9 O -0.428 6.428 10 O -0.111 6.111 11 C -0.453 4.453 12 H 0.119 0.881 13 C -0.160 4.160 14 N -0.493 5.493 15 Si 0.771 3.229 16 H -0.197 1.197 17 H -0.202 1.202 18 H -0.189 1.189 19 H 0.089 0.911 20 H 0.074 0.926 21 H 0.105 0.895 22 H 0.118 0.882 23 H 0.150 0.850 24 H 0.215 0.785 25 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.563 0.120 -5.094 5.127 hybrid contribution -0.150 -0.390 2.009 2.052 sum -0.713 -0.271 -3.085 3.178 Atomic orbital electron populations 1.21994 0.92674 1.04056 1.02630 1.22438 0.96985 0.75241 1.06772 1.48070 1.40244 1.13738 1.03806 1.78016 1.16557 0.99224 1.12292 1.74810 1.16962 1.10272 1.12628 1.23924 1.03313 0.97345 0.91028 1.21961 1.11116 0.93978 0.88135 1.19154 0.81290 0.83212 0.85496 1.90713 1.51634 1.53074 1.47336 1.83865 1.68874 1.28079 1.30287 1.21362 1.45182 0.99675 0.79033 0.88135 1.25372 0.95539 0.94275 1.00789 1.69916 1.39943 1.05553 1.33859 0.85597 0.79317 0.78011 0.79930 1.19694 1.20171 1.18891 0.91088 0.92616 0.89507 0.88171 0.84997 0.78512 0.91647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.42 10.24 37.16 0.38 -2.04 15 2 C 0.11 1.75 6.60 -4.04 -0.03 1.73 15 3 N -0.26 -4.93 3.39 -57.13 -0.19 -5.13 15 4 N -0.08 -1.54 13.12 60.35 0.79 -0.74 15 5 N -0.28 -5.48 12.34 30.70 0.38 -5.11 15 6 C 0.00 0.08 11.93 -16.95 -0.20 -0.12 15 7 C -0.02 -0.41 7.02 -81.98 -0.58 -0.98 15 8 C 0.46 11.20 7.88 34.29 0.27 11.47 15 9 O -0.53 -13.87 16.18 -19.32 -0.31 -14.18 15 10 O -0.20 -5.27 7.39 -21.82 -0.16 -5.44 15 11 C -0.38 -10.15 9.65 30.95 0.30 -9.85 15 12 H 0.10 2.76 6.86 -52.49 -0.36 2.40 15 13 C 0.05 1.16 5.50 -17.52 -0.10 1.07 15 14 N -0.86 -22.05 13.67 55.49 0.76 -21.29 15 15 Si 0.95 19.55 29.55 -169.99 -5.02 14.53 15 16 H -0.27 -5.50 7.11 56.52 0.40 -5.09 15 17 H -0.28 -5.52 7.11 56.52 0.40 -5.11 15 18 H -0.26 -5.44 7.11 56.52 0.40 -5.04 15 19 H 0.07 1.29 8.14 -51.93 -0.42 0.87 15 20 H 0.05 0.79 8.14 -51.93 -0.42 0.36 15 21 H 0.09 1.22 8.14 -51.93 -0.42 0.80 15 22 H 0.10 1.36 8.14 -51.93 -0.42 0.93 15 23 H 0.13 2.53 6.32 -51.93 -0.33 2.20 15 24 H 0.20 3.16 8.06 -52.48 -0.42 2.74 15 25 H 0.27 6.50 8.31 -40.82 -0.34 6.16 15 LS Contribution 237.89 15.07 3.58 3.58 Total: -1.00 -29.21 237.89 -2.06 -31.28 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: -1.94 Total: 1.22 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: 0.05 Total: 1.26 kcal Atomic # 7 Polarization: -34.00 SS G_CDS: 1.74 Total: -32.26 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -0.47 Total: -19.61 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.02 Total: 14.53 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -29.21 -2.06 -31.28 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382128548.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.243 kcal (2) G-P(sol) polarization free energy of solvation -29.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds