Wall clock time and date at job start Sun Mar 29 2020 22:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.47378 * 2 1 4 4 N 1.28680 * 126.02194 * 269.97868 * 3 2 1 5 5 N 1.28467 * 110.90750 * 180.02562 * 4 3 2 6 6 C 1.33316 * 109.51928 * 359.97438 * 5 4 3 7 7 C 1.37125 * 126.01699 * 90.00397 * 3 2 1 8 8 C 1.47019 * 127.28418 * 359.71292 * 7 3 2 9 9 O 1.21575 * 119.99866 * 180.02562 * 8 7 3 10 10 O 1.34805 * 120.00047 * 0.02562 * 8 7 3 11 11 C 1.34846 * 117.00117 * 179.97438 * 10 8 7 12 12 H 1.07995 * 119.99768 * 0.02562 * 11 10 8 13 13 C 1.38816 * 120.00133 * 179.97438 * 11 10 8 14 14 N 1.31417 * 120.00134 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00028 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47306 * 90.00152 * 15 13 11 17 17 H 1.48502 * 109.47154 * 210.00169 * 15 13 11 18 18 H 1.48501 * 109.47170 * 329.99950 * 15 13 11 19 19 H 1.09006 * 109.46736 * 299.99868 * 1 2 3 20 20 H 1.08998 * 109.46953 * 59.99519 * 1 2 3 21 21 H 1.08999 * 109.47029 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47003 * 240.00182 * 2 1 3 23 23 H 1.09003 * 109.47388 * 120.00641 * 2 1 3 24 24 H 1.08004 * 126.90733 * 180.02562 * 6 5 4 25 25 H 0.97000 * 120.00142 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2711 2.0945 -1.0408 5 7 2.6849 3.2637 -0.7058 6 6 2.7184 3.3604 0.6234 7 6 2.2873 2.1414 1.1091 8 6 2.1410 1.7450 2.5173 9 8 2.4194 2.5310 3.4021 10 8 1.6983 0.5101 2.8275 11 6 1.5876 0.2105 4.1375 12 1 1.8484 0.9465 4.8836 13 6 1.1373 -1.0434 4.5272 14 7 0.8194 -1.9388 3.6193 15 14 0.9832 -1.4581 6.3420 16 1 -0.3757 -1.0960 6.8189 17 1 1.2050 -2.9134 6.5378 18 1 1.9978 -0.6948 7.1121 19 1 -0.3633 0.5138 0.8901 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8934 -0.5139 0.8899 24 1 3.0218 4.2193 1.2038 25 1 0.5051 -2.8152 3.8916 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382128548.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:19 Heat of formation + Delta-G solvation = -6.253159 kcal Electronic energy + Delta-G solvation = -13931.947547 eV Core-core repulsion = 11333.582843 eV Total energy + Delta-G solvation = -2598.364704 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.074 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -44.31166 -40.96050 -37.46900 -36.45214 -34.35478 -32.45747 -31.79361 -27.90696 -25.87743 -24.87862 -23.15504 -21.75782 -20.01561 -19.15443 -17.91628 -17.57741 -16.90634 -16.39044 -16.27780 -15.71977 -15.09838 -14.64131 -13.96672 -13.68846 -13.28781 -13.26211 -13.10538 -12.57211 -12.48339 -12.27427 -12.15067 -11.90730 -11.41270 -11.27461 -10.74412 -10.56715 -8.60976 -6.35802 -0.23750 1.11558 1.14202 1.37689 1.42185 1.52591 1.91771 1.98412 2.47081 2.96006 3.23741 3.64870 3.89760 3.94825 4.26705 4.30622 4.47689 4.73452 4.90946 4.99376 5.11497 5.14955 5.40012 5.73077 6.43116 6.83969 7.20511 7.54860 8.57394 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.045360 B = 0.010147 C = 0.008522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.140053 B = 2758.642898 C = 3284.947398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.102 3.898 3 N -0.250 5.250 4 N -0.070 5.070 5 N -0.291 5.291 6 C 0.025 3.975 7 C -0.049 4.049 8 C 0.466 3.534 9 O -0.558 6.558 10 O -0.214 6.214 11 C -0.419 4.419 12 H 0.086 0.914 13 C 0.011 3.989 14 N -0.879 5.879 15 Si 1.014 2.986 16 H -0.262 1.262 17 H -0.260 1.260 18 H -0.266 1.266 19 H 0.037 0.963 20 H 0.074 0.926 21 H 0.103 0.897 22 H 0.138 0.862 23 H 0.105 0.895 24 H 0.224 0.776 25 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.741 -0.252 -4.180 4.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.017 4.017 3 N -0.050 5.050 4 N -0.051 5.051 5 N -0.153 5.153 6 C -0.135 4.135 7 C -0.181 4.181 8 C 0.313 3.687 9 O -0.454 6.454 10 O -0.120 6.120 11 C -0.495 4.495 12 H 0.103 0.897 13 C -0.193 4.193 14 N -0.515 5.515 15 Si 0.833 3.167 16 H -0.187 1.187 17 H -0.184 1.184 18 H -0.190 1.190 19 H 0.056 0.944 20 H 0.093 0.907 21 H 0.121 0.879 22 H 0.155 0.845 23 H 0.123 0.877 24 H 0.240 0.760 25 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.754 -0.310 -5.516 5.576 hybrid contribution -0.079 -0.228 2.001 2.015 sum -0.833 -0.538 -3.515 3.652 Atomic orbital electron populations 1.21936 0.91775 1.04905 1.01829 1.22620 0.97651 0.74212 1.07236 1.48276 1.39344 1.14237 1.03159 1.77991 1.15762 0.99277 1.12020 1.74848 1.17528 1.10336 1.12603 1.24381 1.01021 0.97194 0.90918 1.21715 1.13983 0.95301 0.87141 1.19629 0.79852 0.82517 0.86734 1.90676 1.52582 1.53540 1.48621 1.83898 1.69468 1.28778 1.29881 1.21511 1.48024 1.00589 0.79355 0.89669 1.26370 0.94198 0.93382 1.05313 1.69968 1.39636 1.06034 1.35837 0.84660 0.79476 0.78389 0.74171 1.18704 1.18437 1.19040 0.94353 0.90738 0.87870 0.84452 0.87694 0.75994 0.90759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.41 10.24 71.98 0.74 -3.67 15 2 C 0.10 3.27 6.60 86.38 0.57 3.84 15 3 N -0.25 -9.21 3.39 -334.65 -1.14 -10.35 15 4 N -0.07 -2.52 13.12 37.02 0.49 -2.03 15 5 N -0.29 -10.65 12.34 -56.80 -0.70 -11.35 15 6 C 0.03 0.92 11.93 84.44 1.01 1.93 15 7 C -0.05 -2.04 7.02 40.59 0.28 -1.75 15 8 C 0.47 22.98 7.88 70.12 0.55 23.53 15 9 O -0.56 -29.66 16.18 19.59 0.32 -29.34 15 10 O -0.21 -11.33 7.39 10.67 0.08 -11.25 15 11 C -0.42 -23.19 9.65 67.96 0.66 -22.53 15 12 H 0.09 4.85 6.86 -2.91 -0.02 4.83 15 13 C 0.01 0.55 5.50 84.89 0.47 1.01 15 14 N -0.88 -45.19 13.67 21.64 0.30 -44.90 15 15 Si 1.01 39.54 29.55 68.60 2.03 41.57 15 16 H -0.26 -9.81 7.11 99.48 0.71 -9.10 15 17 H -0.26 -9.40 7.11 99.48 0.71 -8.70 15 18 H -0.27 -10.36 7.11 99.48 0.71 -9.65 15 19 H 0.04 1.39 8.14 -2.38 -0.02 1.38 15 20 H 0.07 1.95 8.14 -2.39 -0.02 1.93 15 21 H 0.10 2.75 8.14 -2.39 -0.02 2.73 15 22 H 0.14 3.37 8.14 -2.39 -0.02 3.35 15 23 H 0.10 4.06 6.32 -2.39 -0.02 4.04 15 24 H 0.22 6.68 8.06 -2.91 -0.02 6.66 15 25 H 0.28 13.21 8.31 -92.71 -0.77 12.44 15 Total: -1.00 -62.23 237.89 6.86 -55.38 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: 1.21 Total: 9.91 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: 4.27 Total: 2.36 kcal Atomic # 7 Polarization: -67.57 SS G_CDS: -1.06 Total: -68.63 kcal Atomic # 8 Polarization: -40.98 SS G_CDS: 0.40 Total: -40.59 kcal Atomic # 14 Polarization: 39.54 SS G_CDS: 2.03 Total: 41.57 kcal Total: -62.23 6.86 -55.38 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382128548.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.126 kcal (2) G-P(sol) polarization free energy of solvation -62.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds