Wall clock time and date at job start Sun Mar 29 2020 21:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30503 * 125.64757 * 2 1 4 4 C 1.34132 * 109.25579 * 180.29064 * 3 2 1 5 5 C 1.34669 * 108.01768 * 359.73289 * 4 3 2 6 6 N 1.35042 * 125.65478 * 179.83106 * 2 1 3 7 7 C 1.46500 * 126.39313 * 359.97438 * 6 2 1 8 8 C 1.52997 * 109.47473 * 84.71557 * 7 6 2 9 9 O 1.42898 * 109.47319 * 180.02562 * 8 7 6 10 10 C 1.42902 * 114.00186 * 180.02562 * 9 8 7 11 11 C 1.50697 * 109.47205 * 179.97438 * 10 9 8 12 12 H 1.08008 * 120.00105 * 359.97438 * 11 10 9 13 13 C 1.37873 * 120.00129 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99722 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00218 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.46964 * 89.99643 * 15 13 11 17 17 H 1.48499 * 109.47045 * 209.99599 * 15 13 11 18 18 H 1.48495 * 109.46904 * 329.99888 * 15 13 11 19 19 H 1.09000 * 109.46880 * 270.17047 * 1 2 3 20 20 H 1.08998 * 109.47353 * 30.17154 * 1 2 3 21 21 H 1.08999 * 109.47119 * 150.17007 * 1 2 3 22 22 H 1.07998 * 125.98893 * 179.72468 * 4 3 2 23 23 H 1.07997 * 126.59117 * 179.97438 * 5 4 3 24 24 H 1.09002 * 109.47129 * 324.71300 * 7 6 2 25 25 H 1.08998 * 109.46845 * 204.72107 * 7 6 2 26 26 H 1.09002 * 109.47153 * 59.99757 * 8 7 6 27 27 H 1.09001 * 109.46832 * 299.99948 * 8 7 6 28 28 H 1.09001 * 109.46918 * 299.99649 * 10 9 8 29 29 H 1.08999 * 109.46857 * 59.99535 * 10 9 8 30 30 H 0.96998 * 119.99585 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2675 1.0605 0.0000 4 6 3.5543 0.6820 -0.0064 5 6 3.5926 -0.6642 -0.0046 6 7 2.2941 -1.0973 0.0032 7 6 1.8426 -2.4909 0.0079 8 6 1.5585 -2.9398 -1.4269 9 8 1.1175 -4.2991 -1.4223 10 6 0.8239 -4.8194 -2.7205 11 6 0.3713 -6.2514 -2.5971 12 1 0.3140 -6.7179 -1.6247 13 6 0.0314 -6.9666 -3.7258 14 7 0.1018 -6.3989 -4.9100 15 14 -0.5289 -8.7421 -3.5730 16 1 -2.0039 -8.7829 -3.4052 17 1 -0.1494 -9.4882 -4.7996 18 1 0.1210 -9.3664 -2.3928 19 1 -0.3633 0.0031 1.0277 20 1 -0.3634 0.8884 -0.5165 21 1 -0.3633 -0.8915 -0.5112 22 1 4.4097 1.3412 -0.0122 23 1 4.4776 -1.2831 -0.0089 24 1 0.9328 -2.5761 0.6021 25 1 2.6188 -3.1229 0.4394 26 1 2.4683 -2.8547 -2.0212 27 1 0.7822 -2.3078 -1.8583 28 1 0.0329 -4.2262 -3.1793 29 1 1.7189 -4.7736 -3.3410 30 1 -0.1377 -6.9019 -5.7040 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382166926.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:55 Heat of formation + Delta-G solvation = 3.934869 kcal Electronic energy + Delta-G solvation = -13273.211348 eV Core-core repulsion = 10876.547435 eV Total energy + Delta-G solvation = -2396.663913 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.02287 -37.13372 -34.24182 -32.75341 -31.68900 -29.17416 -27.06491 -26.63667 -23.07716 -22.38426 -21.29352 -19.60746 -17.05919 -16.59857 -15.60793 -15.48734 -15.21829 -14.37485 -14.27479 -13.59340 -13.51595 -12.95348 -12.76082 -12.63153 -12.28589 -12.10088 -11.26955 -10.99833 -10.96385 -10.83949 -10.22700 -9.92291 -9.51948 -9.25609 -9.02419 -8.35709 -8.29056 -6.21215 -4.24411 2.08454 2.77634 3.19575 3.24064 3.29484 3.34269 4.24963 4.51696 4.63063 4.76333 4.95356 5.15456 5.33203 5.39244 5.44572 5.50024 5.54305 5.77090 5.80481 5.89302 6.00721 6.40745 6.81818 6.91976 7.24194 7.26099 7.66383 7.99517 8.15733 8.34941 8.86852 9.40916 10.90174 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.069284 B = 0.005285 C = 0.005214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.036923 B = 5297.059824 C = 5368.370059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.206 3.794 3 N -0.498 5.498 4 C -0.034 4.034 5 C -0.056 4.056 6 N -0.449 5.449 7 C 0.105 3.895 8 C 0.052 3.948 9 O -0.393 6.393 10 C 0.197 3.803 11 C -0.520 4.520 12 H 0.068 0.932 13 C 0.058 3.942 14 N -0.897 5.897 15 Si 0.910 3.090 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.271 1.271 19 H 0.079 0.921 20 H 0.089 0.911 21 H 0.078 0.922 22 H 0.168 0.832 23 H 0.173 0.827 24 H 0.100 0.900 25 H 0.100 0.900 26 H 0.044 0.956 27 H 0.045 0.955 28 H 0.008 0.992 29 H 0.007 0.993 30 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.392 9.182 8.649 13.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.056 4.056 3 N -0.217 5.217 4 C -0.182 4.182 5 C -0.189 4.189 6 N -0.132 5.132 7 C -0.018 4.018 8 C -0.027 4.027 9 O -0.312 6.312 10 C 0.123 3.877 11 C -0.558 4.558 12 H 0.086 0.914 13 C -0.144 4.144 14 N -0.536 5.536 15 Si 0.737 3.263 16 H -0.203 1.203 17 H -0.210 1.210 18 H -0.196 1.196 19 H 0.098 0.902 20 H 0.108 0.892 21 H 0.096 0.904 22 H 0.185 0.815 23 H 0.191 0.809 24 H 0.118 0.882 25 H 0.118 0.882 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.026 0.974 29 H 0.025 0.975 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.012 9.666 8.620 13.297 hybrid contribution 0.244 -1.625 -0.431 1.699 sum 3.256 8.040 8.189 11.929 Atomic orbital electron populations 1.20234 0.85016 1.04339 1.03468 1.23333 0.95794 0.81377 1.05112 1.70229 1.02285 1.28379 1.20831 1.22240 0.94777 0.92737 1.08443 1.22745 0.87206 0.96865 1.12111 1.45388 1.06560 1.07462 1.53838 1.21736 1.02709 0.78319 0.99008 1.22436 0.98874 0.87242 0.94144 1.87801 1.86752 1.22669 1.34022 1.20275 0.94841 0.94275 0.78278 1.21016 1.45129 0.95610 0.94020 0.91410 1.24959 0.95416 0.99233 0.94793 1.69961 1.48152 1.37434 0.98009 0.86298 0.79004 0.83264 0.77718 1.20348 1.20984 1.19571 0.90245 0.89249 0.90358 0.81478 0.80939 0.88219 0.88164 0.93764 0.93730 0.97418 0.97476 0.92478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.81 10.04 36.00 0.36 -0.45 16 2 C 0.21 2.98 7.90 -155.41 -1.23 1.75 16 3 N -0.50 -7.83 11.25 -10.82 -0.12 -7.95 16 4 C -0.03 -0.46 11.87 -17.81 -0.21 -0.68 16 5 C -0.06 -0.73 11.58 -16.56 -0.19 -0.92 16 6 N -0.45 -6.28 2.75 -113.91 -0.31 -6.59 16 7 C 0.10 1.44 6.04 -4.04 -0.02 1.42 16 8 C 0.05 0.91 6.26 37.16 0.23 1.14 16 9 O -0.39 -8.92 10.33 -35.23 -0.36 -9.28 16 10 C 0.20 5.25 5.69 36.00 0.20 5.45 16 11 C -0.52 -14.86 9.43 -34.44 -0.32 -15.18 16 12 H 0.07 1.91 7.81 -52.48 -0.41 1.50 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 14 N -0.90 -26.33 13.29 55.43 0.74 -25.59 16 15 Si 0.91 21.26 29.54 -169.99 -5.02 16.24 16 16 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 19 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 20 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 21 H 0.08 0.87 7.34 -51.93 -0.38 0.49 16 22 H 0.17 1.78 8.06 -52.49 -0.42 1.36 16 23 H 0.17 1.73 8.06 -52.49 -0.42 1.31 16 24 H 0.10 1.26 7.94 -51.93 -0.41 0.85 16 25 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 26 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.04 0.78 7.64 -51.93 -0.40 0.38 16 28 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 266.74 15.07 4.02 4.02 Total: -1.00 -32.03 266.74 -6.46 -38.49 By element: Atomic # 1 Polarization: 0.71 SS G_CDS: -4.12 Total: -3.40 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: -1.28 Total: -5.93 kcal Atomic # 7 Polarization: -40.43 SS G_CDS: 0.30 Total: -40.13 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: -0.36 Total: -9.28 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -32.03 -6.46 -38.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382166926.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.422 kcal (2) G-P(sol) polarization free energy of solvation -32.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds