Wall clock time and date at job start Sun Mar 29 2020 21:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30503 * 125.64757 * 2 1 4 4 C 1.34132 * 109.25579 * 180.29064 * 3 2 1 5 5 C 1.34669 * 108.01768 * 359.73289 * 4 3 2 6 6 N 1.35042 * 125.65478 * 179.83106 * 2 1 3 7 7 C 1.46500 * 126.39313 * 359.97438 * 6 2 1 8 8 C 1.52997 * 109.47473 * 84.71557 * 7 6 2 9 9 O 1.42898 * 109.47319 * 180.02562 * 8 7 6 10 10 C 1.42902 * 114.00186 * 180.02562 * 9 8 7 11 11 C 1.50697 * 109.47205 * 179.97438 * 10 9 8 12 12 H 1.08008 * 120.00105 * 359.97438 * 11 10 9 13 13 C 1.37873 * 120.00129 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99722 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00218 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.46964 * 89.99643 * 15 13 11 17 17 H 1.48499 * 109.47045 * 209.99599 * 15 13 11 18 18 H 1.48495 * 109.46904 * 329.99888 * 15 13 11 19 19 H 1.09000 * 109.46880 * 270.17047 * 1 2 3 20 20 H 1.08998 * 109.47353 * 30.17154 * 1 2 3 21 21 H 1.08999 * 109.47119 * 150.17007 * 1 2 3 22 22 H 1.07998 * 125.98893 * 179.72468 * 4 3 2 23 23 H 1.07997 * 126.59117 * 179.97438 * 5 4 3 24 24 H 1.09002 * 109.47129 * 324.71300 * 7 6 2 25 25 H 1.08998 * 109.46845 * 204.72107 * 7 6 2 26 26 H 1.09002 * 109.47153 * 59.99757 * 8 7 6 27 27 H 1.09001 * 109.46832 * 299.99948 * 8 7 6 28 28 H 1.09001 * 109.46918 * 299.99649 * 10 9 8 29 29 H 1.08999 * 109.46857 * 59.99535 * 10 9 8 30 30 H 0.96998 * 119.99585 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2675 1.0605 0.0000 4 6 3.5543 0.6820 -0.0064 5 6 3.5926 -0.6642 -0.0046 6 7 2.2941 -1.0973 0.0032 7 6 1.8426 -2.4909 0.0079 8 6 1.5585 -2.9398 -1.4269 9 8 1.1175 -4.2991 -1.4223 10 6 0.8239 -4.8194 -2.7205 11 6 0.3713 -6.2514 -2.5971 12 1 0.3140 -6.7179 -1.6247 13 6 0.0314 -6.9666 -3.7258 14 7 0.1018 -6.3989 -4.9100 15 14 -0.5289 -8.7421 -3.5730 16 1 -2.0039 -8.7829 -3.4052 17 1 -0.1494 -9.4882 -4.7996 18 1 0.1210 -9.3664 -2.3928 19 1 -0.3633 0.0031 1.0277 20 1 -0.3634 0.8884 -0.5165 21 1 -0.3633 -0.8915 -0.5112 22 1 4.4097 1.3412 -0.0122 23 1 4.4776 -1.2831 -0.0089 24 1 0.9328 -2.5761 0.6021 25 1 2.6188 -3.1229 0.4394 26 1 2.4683 -2.8547 -2.0212 27 1 0.7822 -2.3078 -1.8583 28 1 0.0329 -4.2262 -3.1793 29 1 1.7189 -4.7736 -3.3410 30 1 -0.1377 -6.9019 -5.7040 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382166926.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:54 Heat of formation + Delta-G solvation = -16.225664 kcal Electronic energy + Delta-G solvation = -13274.085574 eV Core-core repulsion = 10876.547435 eV Total energy + Delta-G solvation = -2397.538139 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -43.07629 -38.86121 -35.59127 -34.76336 -32.65023 -30.68341 -28.85254 -27.72161 -24.72035 -24.16801 -22.33548 -20.68827 -18.72221 -18.21949 -17.12888 -16.98745 -16.76873 -16.10327 -15.40242 -15.12848 -14.70039 -14.21912 -14.04008 -13.91020 -13.49055 -13.20327 -12.93831 -12.91677 -12.64742 -12.49527 -12.10053 -11.36817 -11.02704 -10.93917 -10.67225 -10.38198 -9.31383 -8.35472 -6.48834 1.02597 1.40973 1.43368 1.55145 1.68327 2.13995 2.33972 2.99289 3.11099 3.59733 3.63504 3.88790 4.03739 4.20624 4.31884 4.45730 4.58376 4.64247 4.68555 4.78794 4.85388 5.03262 5.08506 5.35676 5.50667 5.82350 5.88466 6.18237 6.39803 6.71811 7.10413 7.23189 8.76819 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.069284 B = 0.005285 C = 0.005214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.036923 B = 5297.059824 C = 5368.370059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.192 3.808 3 N -0.529 5.529 4 C -0.050 4.050 5 C -0.058 4.058 6 N -0.454 5.454 7 C 0.118 3.882 8 C 0.049 3.951 9 O -0.399 6.399 10 C 0.210 3.790 11 C -0.550 4.550 12 H 0.067 0.933 13 C 0.007 3.993 14 N -0.931 5.931 15 Si 0.985 3.015 16 H -0.267 1.267 17 H -0.276 1.276 18 H -0.262 1.262 19 H 0.098 0.902 20 H 0.094 0.906 21 H 0.077 0.923 22 H 0.190 0.810 23 H 0.201 0.799 24 H 0.114 0.886 25 H 0.116 0.884 26 H 0.040 0.960 27 H 0.043 0.957 28 H -0.011 1.011 29 H -0.013 1.013 30 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.393 8.363 9.567 13.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.071 4.071 3 N -0.249 5.249 4 C -0.197 4.197 5 C -0.190 4.190 6 N -0.139 5.139 7 C -0.004 4.004 8 C -0.029 4.029 9 O -0.319 6.319 10 C 0.135 3.865 11 C -0.588 4.588 12 H 0.086 0.914 13 C -0.192 4.192 14 N -0.570 5.570 15 Si 0.808 3.192 16 H -0.192 1.192 17 H -0.201 1.201 18 H -0.186 1.186 19 H 0.116 0.884 20 H 0.112 0.888 21 H 0.096 0.904 22 H 0.207 0.793 23 H 0.218 0.782 24 H 0.132 0.868 25 H 0.134 0.866 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.007 0.993 29 H 0.005 0.995 30 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.028 8.875 9.554 13.388 hybrid contribution 0.294 -1.252 -0.720 1.474 sum 3.322 7.623 8.834 12.132 Atomic orbital electron populations 1.20335 0.83362 1.04512 1.04748 1.23885 0.96972 0.81355 1.04839 1.70225 1.03451 1.29310 1.21914 1.22732 0.94864 0.93658 1.08400 1.23266 0.87646 0.97134 1.10990 1.45459 1.07026 1.07233 1.54142 1.21600 1.04068 0.78520 0.96215 1.22637 0.98432 0.84709 0.97131 1.87742 1.86926 1.25462 1.31723 1.19891 0.93176 0.93873 0.79538 1.21379 1.46203 0.96770 0.94418 0.91447 1.25977 0.94881 1.04163 0.94137 1.70071 1.48543 1.39505 0.98909 0.85152 0.78885 0.77063 0.78148 1.19232 1.20146 1.18619 0.88379 0.88759 0.90442 0.79282 0.78228 0.86793 0.86569 0.94173 0.93844 0.99292 0.99519 0.91970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.53 10.04 71.24 0.72 -0.81 16 2 C 0.19 5.34 7.90 138.13 1.09 6.43 16 3 N -0.53 -16.19 11.25 -188.13 -2.12 -18.30 16 4 C -0.05 -1.29 11.87 83.52 0.99 -0.30 16 5 C -0.06 -1.40 11.58 83.09 0.96 -0.44 16 6 N -0.45 -11.99 2.75 -514.30 -1.41 -13.41 16 7 C 0.12 3.06 6.04 86.38 0.52 3.58 16 8 C 0.05 1.70 6.26 71.98 0.45 2.15 16 9 O -0.40 -18.10 10.33 -148.98 -1.54 -19.64 16 10 C 0.21 11.39 5.69 71.24 0.41 11.80 16 11 C -0.55 -31.59 9.43 25.60 0.24 -31.35 16 12 H 0.07 3.78 7.81 -2.91 -0.02 3.76 16 13 C 0.01 0.40 5.46 84.65 0.46 0.86 16 14 N -0.93 -54.89 13.29 21.45 0.28 -54.61 16 15 Si 0.98 42.91 29.54 68.60 2.03 44.94 16 16 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 17 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 18 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 19 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 20 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 21 H 0.08 1.65 7.34 -2.39 -0.02 1.63 16 22 H 0.19 3.74 8.06 -2.91 -0.02 3.72 16 23 H 0.20 3.48 8.06 -2.91 -0.02 3.46 16 24 H 0.11 2.64 7.94 -2.39 -0.02 2.62 16 25 H 0.12 2.66 8.14 -2.39 -0.02 2.64 16 26 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.04 1.51 7.64 -2.39 -0.02 1.50 16 28 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 29 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 30 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 Total: -1.00 -67.92 266.74 4.19 -63.73 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: 1.11 Total: 5.37 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: 5.84 Total: -8.07 kcal Atomic # 7 Polarization: -83.07 SS G_CDS: -3.25 Total: -86.32 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -1.54 Total: -19.64 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -67.92 4.19 -63.73 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382166926.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.501 kcal (2) G-P(sol) polarization free energy of solvation -67.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds