Wall clock time and date at job start Sun Mar 29 2020 21:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.28606 * 124.61610 * 2 1 4 4 C 1.31377 * 108.71311 * 179.97438 * 3 2 1 5 5 C 1.39677 * 105.90580 * 359.97438 * 4 3 2 6 6 C 1.50697 * 127.05024 * 179.97438 * 5 4 3 7 7 N 1.46905 * 109.47066 * 95.00062 * 6 5 4 8 8 C 1.46901 * 110.99870 * 180.02562 * 7 6 5 9 9 C 1.53004 * 109.46916 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.46807 * 179.97438 * 9 8 7 11 11 H 1.07995 * 120.00107 * 359.97438 * 10 9 8 12 12 C 1.37878 * 119.99714 * 179.97438 * 10 9 8 13 13 N 1.31510 * 119.99944 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99765 * 179.97438 * 12 10 9 15 15 H 1.48494 * 109.47051 * 60.00574 * 14 12 10 16 16 H 1.48501 * 109.46677 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47226 * 299.99990 * 14 12 10 18 18 N 1.28601 * 124.62014 * 180.24254 * 2 1 3 19 19 H 1.08999 * 109.47220 * 90.02856 * 1 2 3 20 20 H 1.09008 * 109.46828 * 210.02937 * 1 2 3 21 21 H 1.08999 * 109.47023 * 330.02123 * 1 2 3 22 22 H 1.08009 * 127.04830 * 179.97438 * 4 3 2 23 23 H 1.09001 * 109.47558 * 335.00225 * 6 5 4 24 24 H 1.08998 * 109.47216 * 214.99887 * 6 5 4 25 25 H 1.00901 * 110.99869 * 56.04737 * 7 6 5 26 26 H 1.09004 * 109.47031 * 299.99620 * 8 7 6 27 27 H 1.08995 * 109.47111 * 59.99900 * 8 7 6 28 28 H 1.08995 * 109.46615 * 299.99641 * 9 8 7 29 29 H 1.08996 * 109.46939 * 60.00272 * 9 8 7 30 30 H 0.97007 * 120.00038 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1956 1.0584 0.0000 4 6 3.4591 0.6984 0.0006 5 6 3.4591 -0.6984 0.0015 6 6 4.6619 -1.6063 0.0019 7 7 4.9803 -1.9967 1.3819 8 6 6.1507 -2.8836 1.4213 9 6 6.4503 -3.2684 2.8716 10 6 7.6506 -4.1788 2.9119 11 1 8.1494 -4.4556 1.9950 12 6 8.1117 -4.6583 4.1196 13 7 7.5039 -4.3216 5.2361 14 14 9.5991 -5.7873 4.1696 15 1 10.7727 -5.0858 3.5905 16 1 9.8899 -6.1606 5.5772 17 1 9.3165 -7.0135 3.3811 18 7 2.1956 -1.0583 -0.0045 19 1 -0.3633 -0.0005 -1.0276 20 1 -0.3633 -0.8898 0.5143 21 1 -0.3633 0.8902 0.5135 22 1 4.3211 1.3492 0.0003 23 1 5.5130 -1.0822 -0.4329 24 1 4.4446 -2.4975 -0.5869 25 1 4.1846 -2.4274 1.8285 26 1 5.9441 -3.7838 0.8423 27 1 7.0118 -2.3680 0.9965 28 1 6.6567 -2.3685 3.4509 29 1 5.5890 -3.7843 3.2959 30 1 7.8281 -4.6592 6.0858 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382373216.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:46 Heat of formation + Delta-G solvation = 101.888157 kcal Electronic energy + Delta-G solvation = -13020.186394 eV Core-core repulsion = 10660.062805 eV Total energy + Delta-G solvation = -2360.123588 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -43.45723 -36.22230 -33.87339 -32.87778 -32.26237 -29.89958 -27.75465 -25.36675 -23.35936 -22.24368 -20.74111 -20.42531 -17.27812 -16.80722 -16.25968 -15.28786 -14.68604 -14.49199 -14.16563 -13.91231 -13.10608 -13.06154 -12.70876 -12.11984 -11.93146 -11.34415 -11.00741 -10.88630 -10.74238 -10.54499 -10.21375 -9.96515 -9.45360 -9.20735 -9.02095 -8.32461 -7.81800 -5.96903 -3.99671 1.84606 2.33980 2.50777 3.35765 3.39992 3.42353 4.10242 4.46973 4.77850 4.81779 5.00159 5.04802 5.07532 5.34664 5.39012 5.68832 5.81092 6.15475 6.27463 6.35209 6.43037 6.71931 6.99453 7.46609 7.75097 7.82894 7.95815 8.10865 8.38207 8.45683 9.07514 9.63952 11.14543 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.079913 B = 0.004713 C = 0.004626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 350.299056 B = 5939.312169 C = 6051.190974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.166 5.166 3 N -0.298 5.298 4 C -0.009 4.009 5 C 0.016 3.984 6 C 0.146 3.854 7 N -0.687 5.687 8 C 0.066 3.934 9 C 0.025 3.975 10 C -0.522 4.522 11 H 0.055 0.945 12 C 0.058 3.942 13 N -0.894 5.894 14 Si 0.893 3.107 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.277 1.277 18 N -0.289 5.289 19 H 0.085 0.915 20 H 0.101 0.899 21 H 0.100 0.900 22 H 0.198 0.802 23 H 0.091 0.909 24 H 0.041 0.959 25 H 0.339 0.661 26 H 0.018 0.982 27 H 0.062 0.938 28 H 0.026 0.974 29 H 0.013 0.987 30 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.547 8.013 -10.980 17.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.066 5.066 3 N -0.139 5.139 4 C -0.192 4.192 5 C -0.147 4.147 6 C 0.014 3.986 7 N -0.318 5.318 8 C -0.062 4.062 9 C -0.013 4.013 10 C -0.561 4.561 11 H 0.073 0.927 12 C -0.143 4.143 13 N -0.533 5.533 14 Si 0.721 3.279 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.203 1.203 18 N -0.132 5.132 19 H 0.104 0.896 20 H 0.119 0.881 21 H 0.119 0.881 22 H 0.214 0.786 23 H 0.109 0.891 24 H 0.060 0.940 25 H 0.157 0.843 26 H 0.036 0.964 27 H 0.080 0.920 28 H 0.044 0.956 29 H 0.032 0.968 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.597 8.565 -10.671 18.598 hybrid contribution 1.268 -1.400 -0.178 1.897 sum -11.329 7.165 -10.849 17.245 Atomic orbital electron populations 1.22043 0.70652 1.05697 1.04523 1.47849 1.08682 0.99495 1.50588 1.74011 1.04103 1.16079 1.19690 1.24635 0.94188 0.94875 1.05472 1.23225 0.92251 0.94465 1.04756 1.20130 0.90963 0.95291 0.92182 1.60635 1.09309 1.47857 1.14035 1.22194 0.90543 0.92112 1.01339 1.19069 0.96328 0.96624 0.89239 1.21141 1.13197 1.29057 0.92705 0.92724 1.25002 0.97073 0.96558 0.95709 1.69968 1.40613 1.44967 0.97738 0.86640 0.83205 0.81129 0.76904 1.20196 1.21304 1.20301 1.74007 1.03876 1.15612 1.19666 0.89631 0.88075 0.88144 0.78551 0.89077 0.94044 0.84319 0.96399 0.91995 0.95577 0.96818 0.92947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.83 11.57 59.85 0.69 1.53 16 2 N -0.17 -2.19 4.35 -16.63 -0.07 -2.26 16 3 N -0.30 -4.19 12.05 30.68 0.37 -3.82 16 4 C -0.01 -0.12 12.16 -17.21 -0.21 -0.33 16 5 C 0.02 0.24 6.87 -82.25 -0.56 -0.32 16 6 C 0.15 2.19 6.27 -4.97 -0.03 2.16 16 7 N -0.69 -12.67 6.49 -115.05 -0.75 -13.42 16 8 C 0.07 1.39 5.62 -3.82 -0.02 1.37 16 9 C 0.02 0.66 5.23 -27.88 -0.15 0.51 16 10 C -0.52 -14.91 9.11 -34.44 -0.31 -15.22 16 11 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 12 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 13 N -0.89 -27.21 13.29 55.43 0.74 -26.48 16 14 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 15 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 16 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 N -0.29 -4.39 12.05 33.71 0.41 -3.98 16 19 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 20 H 0.10 0.64 8.14 -51.92 -0.42 0.21 16 21 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 22 H 0.20 2.12 8.06 -52.48 -0.42 1.69 16 23 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 24 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.34 6.41 8.72 -39.29 -0.34 6.07 16 26 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 267.48 15.07 4.03 4.03 Total: -1.00 -33.27 267.48 -5.10 -38.37 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: -4.11 Total: -0.46 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: -0.69 Total: -8.72 kcal Atomic # 7 Polarization: -50.65 SS G_CDS: 0.69 Total: -49.96 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -33.27 -5.10 -38.37 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382373216.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.259 kcal (2) G-P(sol) polarization free energy of solvation -33.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds