Wall clock time and date at job start Sun Mar 29 2020 21:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.28606 * 124.61610 * 2 1 4 4 C 1.31377 * 108.71311 * 179.97438 * 3 2 1 5 5 C 1.39677 * 105.90580 * 359.97438 * 4 3 2 6 6 C 1.50697 * 127.05024 * 179.97438 * 5 4 3 7 7 N 1.46905 * 109.47066 * 95.00062 * 6 5 4 8 8 C 1.46901 * 110.99870 * 180.02562 * 7 6 5 9 9 C 1.53004 * 109.46916 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.46807 * 179.97438 * 9 8 7 11 11 H 1.07995 * 120.00107 * 359.97438 * 10 9 8 12 12 C 1.37878 * 119.99714 * 179.97438 * 10 9 8 13 13 N 1.31510 * 119.99944 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99765 * 179.97438 * 12 10 9 15 15 H 1.48494 * 109.47051 * 60.00574 * 14 12 10 16 16 H 1.48501 * 109.46677 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47226 * 299.99990 * 14 12 10 18 18 N 1.28601 * 124.62014 * 180.24254 * 2 1 3 19 19 H 1.08999 * 109.47220 * 90.02856 * 1 2 3 20 20 H 1.09008 * 109.46828 * 210.02937 * 1 2 3 21 21 H 1.08999 * 109.47023 * 330.02123 * 1 2 3 22 22 H 1.08009 * 127.04830 * 179.97438 * 4 3 2 23 23 H 1.09001 * 109.47558 * 335.00225 * 6 5 4 24 24 H 1.08998 * 109.47216 * 214.99887 * 6 5 4 25 25 H 1.00901 * 110.99869 * 56.04737 * 7 6 5 26 26 H 1.09004 * 109.47031 * 299.99620 * 8 7 6 27 27 H 1.08995 * 109.47111 * 59.99900 * 8 7 6 28 28 H 1.08995 * 109.46615 * 299.99641 * 9 8 7 29 29 H 1.08996 * 109.46939 * 60.00272 * 9 8 7 30 30 H 0.97007 * 120.00038 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1956 1.0584 0.0000 4 6 3.4591 0.6984 0.0006 5 6 3.4591 -0.6984 0.0015 6 6 4.6619 -1.6063 0.0019 7 7 4.9803 -1.9967 1.3819 8 6 6.1507 -2.8836 1.4213 9 6 6.4503 -3.2684 2.8716 10 6 7.6506 -4.1788 2.9119 11 1 8.1494 -4.4556 1.9950 12 6 8.1117 -4.6583 4.1196 13 7 7.5039 -4.3216 5.2361 14 14 9.5991 -5.7873 4.1696 15 1 10.7727 -5.0858 3.5905 16 1 9.8899 -6.1606 5.5772 17 1 9.3165 -7.0135 3.3811 18 7 2.1956 -1.0583 -0.0045 19 1 -0.3633 -0.0005 -1.0276 20 1 -0.3633 -0.8898 0.5143 21 1 -0.3633 0.8902 0.5135 22 1 4.3211 1.3492 0.0003 23 1 5.5130 -1.0822 -0.4329 24 1 4.4446 -2.4975 -0.5869 25 1 4.1846 -2.4274 1.8285 26 1 5.9441 -3.7838 0.8423 27 1 7.0118 -2.3680 0.9965 28 1 6.6567 -2.3685 3.4509 29 1 5.5890 -3.7843 3.2959 30 1 7.8281 -4.6592 6.0858 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382373216.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:46 Heat of formation + Delta-G solvation = 76.684673 kcal Electronic energy + Delta-G solvation = -13021.279299 eV Core-core repulsion = 10660.062805 eV Total energy + Delta-G solvation = -2361.216494 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -44.49134 -37.70977 -35.36559 -34.40377 -33.48404 -31.57195 -28.97832 -26.82772 -25.05849 -23.26382 -22.41617 -21.73111 -18.49177 -18.24348 -17.76264 -16.78661 -16.39503 -15.74662 -15.45121 -15.35281 -14.40246 -14.15428 -13.77958 -13.72393 -13.39489 -12.91023 -12.78136 -12.54421 -12.35426 -11.86189 -11.81813 -11.42958 -11.35157 -11.20412 -10.53469 -10.14365 -9.29514 -8.17534 -6.29214 0.79581 1.40407 1.43471 1.46654 1.53971 1.54486 2.43551 3.12902 3.16177 3.54868 3.82371 4.23517 4.30467 4.32361 4.53439 4.57491 4.59333 4.68648 4.72423 5.08837 5.12415 5.24331 5.47228 5.69431 5.78246 5.80423 6.13330 6.26192 6.44711 6.88384 7.33191 7.40239 8.94654 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.079913 B = 0.004713 C = 0.004626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 350.299056 B = 5939.312169 C = 6051.190974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.162 5.162 3 N -0.308 5.308 4 C -0.015 4.015 5 C -0.003 4.003 6 C 0.151 3.849 7 N -0.692 5.692 8 C 0.085 3.915 9 C 0.030 3.970 10 C -0.544 4.544 11 H 0.065 0.935 12 C -0.001 4.001 13 N -0.934 5.934 14 Si 0.968 3.032 15 H -0.265 1.265 16 H -0.285 1.285 17 H -0.266 1.266 18 N -0.307 5.307 19 H 0.107 0.893 20 H 0.112 0.888 21 H 0.118 0.882 22 H 0.221 0.779 23 H 0.111 0.889 24 H 0.046 0.954 25 H 0.334 0.666 26 H 0.023 0.977 27 H 0.071 0.929 28 H -0.005 1.005 29 H -0.013 1.013 30 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.266 7.998 -12.192 18.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.065 5.065 3 N -0.150 5.150 4 C -0.196 4.196 5 C -0.165 4.165 6 C 0.021 3.979 7 N -0.323 5.323 8 C -0.044 4.044 9 C -0.008 4.008 10 C -0.582 4.582 11 H 0.083 0.917 12 C -0.198 4.198 13 N -0.574 5.574 14 Si 0.793 3.207 15 H -0.189 1.189 16 H -0.210 1.210 17 H -0.191 1.191 18 N -0.151 5.151 19 H 0.126 0.874 20 H 0.130 0.870 21 H 0.137 0.863 22 H 0.237 0.763 23 H 0.129 0.871 24 H 0.064 0.936 25 H 0.151 0.849 26 H 0.041 0.959 27 H 0.090 0.910 28 H 0.013 0.987 29 H 0.005 0.995 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.326 8.562 -11.909 19.159 hybrid contribution 1.048 -1.342 0.195 1.713 sum -11.278 7.220 -11.714 17.792 Atomic orbital electron populations 1.22534 0.67974 1.07204 1.06484 1.48418 1.10175 0.98781 1.49094 1.74003 1.04408 1.16514 1.20112 1.25061 0.94926 0.94749 1.04907 1.23213 0.92197 0.95026 1.06075 1.20143 0.92044 0.95745 0.89998 1.60553 1.08391 1.46837 1.16560 1.21823 0.92056 0.92971 0.97543 1.18936 0.94899 0.94711 0.92235 1.21609 1.13914 1.29400 0.93312 0.91707 1.26000 1.00407 0.98212 0.95224 1.70116 1.42510 1.46351 0.98457 0.85453 0.79154 0.79033 0.77105 1.18942 1.21019 1.19127 1.73955 1.04350 1.16723 1.20113 0.87432 0.86983 0.86317 0.76260 0.87075 0.93630 0.84912 0.95873 0.91045 0.98679 0.99491 0.92810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.26 11.57 127.77 1.48 2.74 16 2 N -0.16 -4.06 4.35 -206.54 -0.90 -4.96 16 3 N -0.31 -8.24 12.05 -56.86 -0.69 -8.92 16 4 C -0.01 -0.38 12.16 85.11 1.03 0.65 16 5 C 0.00 -0.09 6.87 42.97 0.30 0.21 16 6 C 0.15 4.35 6.27 85.55 0.54 4.89 16 7 N -0.69 -25.26 6.49 -517.92 -3.36 -28.63 16 8 C 0.08 3.52 5.62 86.30 0.49 4.01 16 9 C 0.03 1.60 5.23 29.85 0.16 1.76 16 10 C -0.54 -31.13 9.11 25.60 0.23 -30.90 16 11 H 0.06 3.49 7.74 -2.91 -0.02 3.47 16 12 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 13 N -0.93 -57.78 13.29 21.45 0.28 -57.50 16 14 Si 0.97 44.32 29.54 68.60 2.03 46.34 16 15 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 16 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 17 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 18 N -0.31 -9.03 12.05 -47.25 -0.57 -9.60 16 19 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 20 H 0.11 1.22 8.14 -2.38 -0.02 1.20 16 21 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 22 H 0.22 4.32 8.06 -2.91 -0.02 4.29 16 23 H 0.11 2.72 8.14 -2.39 -0.02 2.71 16 24 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.33 12.73 8.72 -89.69 -0.78 11.95 16 26 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 28 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 29 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 30 H 0.26 15.30 8.31 -92.70 -0.77 14.53 16 Total: -1.00 -71.14 267.48 1.82 -69.31 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: 0.35 Total: 10.16 kcal Atomic # 6 Polarization: -20.90 SS G_CDS: 4.68 Total: -16.22 kcal Atomic # 7 Polarization: -104.37 SS G_CDS: -5.23 Total: -109.60 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.34 kcal Total: -71.14 1.82 -69.31 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382373216.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.998 kcal (2) G-P(sol) polarization free energy of solvation -71.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds