Wall clock time and date at job start Sun Mar 29 2020 21:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.28708 * 125.86725 * 2 1 4 4 N 1.28638 * 110.17863 * 180.23903 * 3 2 1 5 5 C 1.33769 * 108.88108 * 359.75841 * 4 3 2 6 6 C 1.35311 * 125.86722 * 179.82451 * 2 1 3 7 7 C 1.50703 * 126.91295 * 0.03595 * 6 2 1 8 8 N 1.46906 * 109.47109 * 274.71002 * 7 6 2 9 9 C 1.46895 * 110.99789 * 179.97438 * 8 7 6 10 10 C 1.53004 * 109.47035 * 179.97438 * 9 8 7 11 11 C 1.50692 * 109.47453 * 180.02562 * 10 9 8 12 12 H 1.08004 * 120.00058 * 0.02562 * 11 10 9 13 13 C 1.37879 * 120.00172 * 180.02562 * 11 10 9 14 14 N 1.31506 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99709 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47101 * 60.00163 * 15 13 11 17 17 H 1.48504 * 109.46703 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.47283 * 299.99821 * 15 13 11 19 19 H 1.09005 * 109.47096 * 270.17263 * 1 2 3 20 20 H 1.08998 * 109.47305 * 30.17385 * 1 2 3 21 21 H 1.08992 * 109.47318 * 150.17797 * 1 2 3 22 22 H 1.08002 * 126.74936 * 179.97438 * 5 4 3 23 23 H 1.08992 * 109.46894 * 154.70737 * 7 6 2 24 24 H 1.09004 * 109.47113 * 34.70888 * 7 6 2 25 25 H 1.00899 * 110.99484 * 303.95639 * 8 7 6 26 26 H 1.08996 * 109.47424 * 299.99656 * 9 8 7 27 27 H 1.09002 * 109.47411 * 60.00282 * 9 8 7 28 28 H 1.09007 * 109.47219 * 300.00436 * 10 9 8 29 29 H 1.09005 * 109.47157 * 59.99991 * 10 9 8 30 30 H 0.96998 * 119.99843 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2192 1.0430 0.0000 4 7 3.4576 0.6952 -0.0050 5 6 3.5321 -0.6404 -0.0032 6 6 2.2578 -1.0965 0.0034 7 6 1.8117 -2.5360 0.0070 8 7 1.5574 -2.9663 1.3884 9 6 1.1190 -4.3677 1.4309 10 6 0.8652 -4.7789 2.8827 11 6 0.4161 -6.2166 2.9264 12 1 0.3215 -6.7810 2.0104 13 6 0.1258 -6.8117 4.1358 14 7 0.2405 -6.1245 5.2511 15 14 -0.4316 -8.5938 4.1899 16 1 0.6244 -9.4606 3.6078 17 1 -0.6778 -8.9929 5.5990 18 1 -1.6838 -8.7448 3.4061 19 1 -0.3633 0.0031 1.0277 20 1 -0.3634 0.8884 -0.5165 21 1 -0.3633 -0.8915 -0.5110 22 1 4.4321 -1.2374 -0.0067 23 1 2.5918 -3.1592 -0.4299 24 1 0.8975 -2.6345 -0.5784 25 1 2.3716 -2.8240 1.9671 26 1 0.1999 -4.4785 0.8556 27 1 1.8941 -5.0041 1.0037 28 1 1.7846 -4.6681 3.4578 29 1 0.0903 -4.1426 3.3103 30 1 0.0366 -6.5432 6.1020 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388251839.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:39 Heat of formation + Delta-G solvation = 89.258970 kcal Electronic energy + Delta-G solvation = -13234.472834 eV Core-core repulsion = 10873.801603 eV Total energy + Delta-G solvation = -2360.671231 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.18843 -36.37864 -34.55432 -33.23869 -31.58601 -29.13659 -27.91036 -25.66259 -23.47696 -22.45882 -20.90500 -20.47439 -17.25031 -16.65707 -16.30210 -15.49930 -14.67959 -14.41439 -14.25977 -13.92533 -13.29267 -13.01326 -12.75011 -12.27714 -12.19531 -11.56358 -11.18596 -10.97677 -10.80211 -10.62991 -10.12397 -10.03937 -9.57351 -9.30858 -9.08123 -8.42111 -8.06784 -6.05988 -4.09525 1.60704 2.42322 2.61059 3.29110 3.34187 3.35824 4.32437 4.40073 4.52303 4.68755 4.95329 5.00503 5.07937 5.29357 5.30130 5.50370 5.55422 5.86681 6.16018 6.19285 6.23166 6.59333 6.83153 7.24859 7.59722 7.66133 7.79576 7.97993 8.34183 8.54901 8.97408 9.54863 11.05316 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.068124 B = 0.005174 C = 0.005124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 410.915361 B = 5410.120281 C = 5463.459581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.279 5.279 3 N -0.095 5.095 4 N -0.275 5.275 5 C -0.052 4.052 6 C -0.003 4.003 7 C 0.127 3.873 8 N -0.690 5.690 9 C 0.066 3.934 10 C 0.026 3.974 11 C -0.525 4.525 12 H 0.054 0.946 13 C 0.059 3.941 14 N -0.893 5.893 15 Si 0.894 3.106 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.276 1.276 19 H 0.097 0.903 20 H 0.096 0.904 21 H 0.099 0.901 22 H 0.187 0.813 23 H 0.057 0.943 24 H 0.082 0.918 25 H 0.343 0.657 26 H 0.060 0.940 27 H 0.021 0.979 28 H 0.015 0.985 29 H 0.025 0.975 30 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.974 7.798 -10.850 13.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.073 5.073 3 N -0.075 5.075 4 N -0.140 5.140 5 C -0.211 4.211 6 C -0.136 4.136 7 C -0.004 4.004 8 N -0.322 5.322 9 C -0.062 4.062 10 C -0.012 4.012 11 C -0.564 4.564 12 H 0.073 0.927 13 C -0.143 4.143 14 N -0.531 5.531 15 Si 0.721 3.279 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.202 1.202 19 H 0.115 0.885 20 H 0.115 0.885 21 H 0.117 0.883 22 H 0.204 0.796 23 H 0.075 0.925 24 H 0.100 0.900 25 H 0.161 0.839 26 H 0.079 0.921 27 H 0.039 0.961 28 H 0.033 0.967 29 H 0.043 0.957 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.310 9.598 -10.652 14.341 hybrid contribution 0.332 -2.653 0.006 2.674 sum 0.642 6.945 -10.646 12.727 Atomic orbital electron populations 1.22255 0.72625 1.05229 1.05640 1.47140 1.09452 1.04438 1.46262 1.78252 0.96646 1.11958 1.20634 1.75038 1.09712 1.12526 1.16739 1.23366 0.97183 0.92017 1.08501 1.22258 0.91026 0.91998 1.08303 1.20358 1.00626 0.86227 0.93213 1.60665 1.40168 1.24319 1.07019 1.22210 0.98146 0.83847 1.01964 1.19064 0.97414 0.95913 0.88791 1.21107 1.45793 0.96792 0.92699 0.92743 1.24999 0.95528 0.98032 0.95700 1.69954 1.48751 1.36657 0.97775 0.86636 0.79217 0.84999 0.77011 1.20241 1.21231 1.20203 0.88487 0.88528 0.88286 0.79604 0.92467 0.90019 0.83937 0.92117 0.96118 0.96705 0.95686 0.92838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.76 11.22 59.85 0.67 1.43 16 2 N -0.28 -3.68 3.74 -63.79 -0.24 -3.91 16 3 N -0.10 -1.48 13.16 60.35 0.79 -0.69 16 4 N -0.28 -4.40 12.41 30.23 0.38 -4.03 16 5 C -0.05 -0.71 11.99 -17.74 -0.21 -0.92 16 6 C 0.00 -0.03 6.51 -82.09 -0.53 -0.57 16 7 C 0.13 1.59 5.91 -4.97 -0.03 1.56 16 8 N -0.69 -11.01 6.49 -115.06 -0.75 -11.76 16 9 C 0.07 1.26 5.62 -3.82 -0.02 1.24 16 10 C 0.03 0.64 5.23 -27.88 -0.15 0.49 16 11 C -0.53 -14.37 9.11 -34.44 -0.31 -14.68 16 12 H 0.05 1.43 7.74 -52.48 -0.41 1.03 16 13 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 14 N -0.89 -26.39 13.29 55.43 0.74 -25.65 16 15 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 16 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 19 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 20 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 21 H 0.10 0.74 7.22 -51.93 -0.37 0.36 16 22 H 0.19 1.96 8.06 -52.49 -0.42 1.54 16 23 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.08 0.92 7.31 -51.93 -0.38 0.54 16 25 H 0.34 5.54 8.72 -39.29 -0.34 5.20 16 26 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.01 0.39 8.14 -51.92 -0.42 -0.04 16 29 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 265.35 15.07 4.00 4.00 Total: -1.00 -31.90 265.35 -4.81 -36.70 By element: Atomic # 1 Polarization: 3.17 SS G_CDS: -4.02 Total: -0.85 kcal Atomic # 6 Polarization: -9.21 SS G_CDS: -0.68 Total: -9.90 kcal Atomic # 7 Polarization: -46.96 SS G_CDS: 0.92 Total: -46.04 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -31.90 -4.81 -36.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388251839.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.962 kcal (2) G-P(sol) polarization free energy of solvation -31.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds