Wall clock time and date at job start Sun Mar 29 2020 21:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.28708 * 125.86725 * 2 1 4 4 N 1.28638 * 110.17863 * 180.23903 * 3 2 1 5 5 C 1.33769 * 108.88108 * 359.75841 * 4 3 2 6 6 C 1.35311 * 125.86722 * 179.82451 * 2 1 3 7 7 C 1.50703 * 126.91295 * 0.03595 * 6 2 1 8 8 N 1.46906 * 109.47109 * 274.71002 * 7 6 2 9 9 C 1.46895 * 110.99789 * 179.97438 * 8 7 6 10 10 C 1.53004 * 109.47035 * 179.97438 * 9 8 7 11 11 C 1.50692 * 109.47453 * 180.02562 * 10 9 8 12 12 H 1.08004 * 120.00058 * 0.02562 * 11 10 9 13 13 C 1.37879 * 120.00172 * 180.02562 * 11 10 9 14 14 N 1.31506 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99709 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47101 * 60.00163 * 15 13 11 17 17 H 1.48504 * 109.46703 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.47283 * 299.99821 * 15 13 11 19 19 H 1.09005 * 109.47096 * 270.17263 * 1 2 3 20 20 H 1.08998 * 109.47305 * 30.17385 * 1 2 3 21 21 H 1.08992 * 109.47318 * 150.17797 * 1 2 3 22 22 H 1.08002 * 126.74936 * 179.97438 * 5 4 3 23 23 H 1.08992 * 109.46894 * 154.70737 * 7 6 2 24 24 H 1.09004 * 109.47113 * 34.70888 * 7 6 2 25 25 H 1.00899 * 110.99484 * 303.95639 * 8 7 6 26 26 H 1.08996 * 109.47424 * 299.99656 * 9 8 7 27 27 H 1.09002 * 109.47411 * 60.00282 * 9 8 7 28 28 H 1.09007 * 109.47219 * 300.00436 * 10 9 8 29 29 H 1.09005 * 109.47157 * 59.99991 * 10 9 8 30 30 H 0.96998 * 119.99843 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2192 1.0430 0.0000 4 7 3.4576 0.6952 -0.0050 5 6 3.5321 -0.6404 -0.0032 6 6 2.2578 -1.0965 0.0034 7 6 1.8117 -2.5360 0.0070 8 7 1.5574 -2.9663 1.3884 9 6 1.1190 -4.3677 1.4309 10 6 0.8652 -4.7789 2.8827 11 6 0.4161 -6.2166 2.9264 12 1 0.3215 -6.7810 2.0104 13 6 0.1258 -6.8117 4.1358 14 7 0.2405 -6.1245 5.2511 15 14 -0.4316 -8.5938 4.1899 16 1 0.6244 -9.4606 3.6078 17 1 -0.6778 -8.9929 5.5990 18 1 -1.6838 -8.7448 3.4061 19 1 -0.3633 0.0031 1.0277 20 1 -0.3634 0.8884 -0.5165 21 1 -0.3633 -0.8915 -0.5110 22 1 4.4321 -1.2374 -0.0067 23 1 2.5918 -3.1592 -0.4299 24 1 0.8975 -2.6345 -0.5784 25 1 2.3716 -2.8240 1.9671 26 1 0.1999 -4.4785 0.8556 27 1 1.8941 -5.0041 1.0037 28 1 1.7846 -4.6681 3.4578 29 1 0.0903 -4.1426 3.3103 30 1 0.0366 -6.5432 6.1020 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388251839.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:39 Heat of formation + Delta-G solvation = 65.455702 kcal Electronic energy + Delta-G solvation = -13235.505021 eV Core-core repulsion = 10873.801603 eV Total energy + Delta-G solvation = -2361.703418 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -44.23267 -37.72085 -35.60825 -35.07959 -33.01258 -30.73738 -28.80320 -27.15296 -25.08405 -23.50618 -22.46464 -21.66471 -18.50719 -18.23314 -17.57540 -16.79305 -16.43650 -15.66674 -15.35946 -15.28924 -14.31204 -14.12199 -14.08535 -13.84249 -13.47753 -12.93270 -12.83237 -12.63574 -12.43945 -11.95995 -11.83407 -11.41505 -11.31131 -11.02528 -10.54070 -10.23996 -9.34571 -8.18467 -6.29764 0.56374 1.43261 1.45652 1.51422 1.53640 1.56089 2.42542 3.15909 3.29886 3.48963 3.74582 3.99473 4.10998 4.29645 4.50709 4.53094 4.61553 4.67357 4.69940 4.93810 5.11059 5.20941 5.46700 5.62511 5.69560 5.79093 6.10369 6.23742 6.43063 6.88696 7.40132 7.47696 8.93416 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.068124 B = 0.005174 C = 0.005124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 410.915361 B = 5410.120281 C = 5463.459581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.275 5.275 3 N -0.120 5.120 4 N -0.308 5.308 5 C -0.055 4.055 6 C -0.005 4.005 7 C 0.134 3.866 8 N -0.696 5.696 9 C 0.086 3.914 10 C 0.029 3.971 11 C -0.543 4.543 12 H 0.065 0.935 13 C 0.000 4.000 14 N -0.934 5.934 15 Si 0.965 3.035 16 H -0.266 1.266 17 H -0.287 1.287 18 H -0.265 1.265 19 H 0.095 0.905 20 H 0.116 0.884 21 H 0.119 0.881 22 H 0.211 0.789 23 H 0.077 0.923 24 H 0.100 0.900 25 H 0.340 0.660 26 H 0.069 0.931 27 H 0.029 0.971 28 H -0.012 1.012 29 H -0.007 1.007 30 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.546 6.677 -12.323 14.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.069 5.069 3 N -0.099 5.099 4 N -0.172 5.172 5 C -0.214 4.214 6 C -0.139 4.139 7 C 0.004 3.996 8 N -0.328 5.328 9 C -0.042 4.042 10 C -0.008 4.008 11 C -0.581 4.581 12 H 0.083 0.917 13 C -0.197 4.197 14 N -0.574 5.574 15 Si 0.789 3.211 16 H -0.191 1.191 17 H -0.212 1.212 18 H -0.190 1.190 19 H 0.114 0.886 20 H 0.135 0.865 21 H 0.137 0.863 22 H 0.228 0.772 23 H 0.095 0.905 24 H 0.118 0.882 25 H 0.158 0.842 26 H 0.087 0.913 27 H 0.047 0.953 28 H 0.007 0.993 29 H 0.012 0.988 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.127 8.502 -12.152 14.831 hybrid contribution 0.456 -2.258 0.464 2.350 sum 0.329 6.243 -11.688 13.255 Atomic orbital electron populations 1.22610 0.70558 1.07318 1.06179 1.47483 1.10692 1.03979 1.44790 1.78190 0.96933 1.12965 1.21838 1.75000 1.10253 1.13937 1.18027 1.23882 0.98499 0.91487 1.07563 1.22381 0.90987 0.92250 1.08321 1.20400 1.02273 0.85782 0.91167 1.60529 1.40540 1.22306 1.09397 1.21793 0.98967 0.85671 0.97765 1.18936 0.94931 0.94701 0.92266 1.21610 1.45257 0.98081 0.93156 0.91690 1.25961 0.95624 1.02809 0.95349 1.70101 1.50100 1.38772 0.98432 0.85506 0.79223 0.79299 0.77042 1.19116 1.21250 1.19016 0.88619 0.86510 0.86307 0.77198 0.90457 0.88203 0.84212 0.91255 0.95283 0.99326 0.98828 0.92863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.18 11.22 127.77 1.43 2.61 16 2 N -0.28 -6.82 3.74 -355.72 -1.33 -8.15 16 3 N -0.12 -3.65 13.16 37.02 0.49 -3.16 16 4 N -0.31 -9.68 12.41 -58.26 -0.72 -10.41 16 5 C -0.06 -1.42 11.99 83.73 1.00 -0.41 16 6 C -0.01 -0.13 6.51 41.36 0.27 0.14 16 7 C 0.13 2.95 5.91 85.56 0.51 3.46 16 8 N -0.70 -21.02 6.49 -517.92 -3.36 -24.38 16 9 C 0.09 3.15 5.62 86.31 0.49 3.64 16 10 C 0.03 1.46 5.23 29.85 0.16 1.62 16 11 C -0.54 -29.46 9.11 25.60 0.23 -29.22 16 12 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 13 C 0.00 0.03 5.46 84.66 0.46 0.49 16 14 N -0.93 -56.00 13.29 21.45 0.28 -55.72 16 15 Si 0.96 42.80 29.54 68.60 2.03 44.82 16 16 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 17 H -0.29 -12.62 7.11 99.48 0.71 -11.92 16 18 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 19 H 0.10 1.60 8.14 -2.38 -0.02 1.58 16 20 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 21 H 0.12 1.43 7.22 -2.39 -0.02 1.42 16 22 H 0.21 4.01 8.06 -2.91 -0.02 3.98 16 23 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 24 H 0.10 1.88 7.31 -2.38 -0.02 1.86 16 25 H 0.34 10.65 8.72 -89.69 -0.78 9.87 16 26 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 27 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 28 H -0.01 -0.64 8.14 -2.38 -0.02 -0.66 16 29 H -0.01 -0.37 8.14 -2.38 -0.02 -0.39 16 30 H 0.26 14.89 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -68.70 265.35 2.28 -66.42 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: 0.35 Total: 8.26 kcal Atomic # 6 Polarization: -22.23 SS G_CDS: 4.55 Total: -17.68 kcal Atomic # 7 Polarization: -97.18 SS G_CDS: -4.64 Total: -101.82 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.82 kcal Total: -68.70 2.28 -66.42 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388251839.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.875 kcal (2) G-P(sol) polarization free energy of solvation -68.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds