Wall clock time and date at job start Sun Mar 29 2020 21:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48499 * 109.47293 * 269.99846 * 3 2 1 5 5 H 1.48504 * 109.47104 * 30.00092 * 3 2 1 6 6 H 1.48495 * 109.47249 * 149.99839 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 N 1.46893 * 109.47176 * 180.02562 * 9 7 2 11 11 C 1.46903 * 110.99924 * 179.97438 * 10 9 7 12 12 C 1.50701 * 109.47245 * 179.97438 * 11 10 9 13 13 C 1.38747 * 120.39033 * 89.99622 * 12 11 10 14 14 C 1.38503 * 118.45641 * 179.97438 * 13 12 11 15 15 C 1.38567 * 119.13262 * 359.97438 * 14 13 12 16 16 F 1.35098 * 119.64371 * 180.02562 * 15 14 13 17 17 N 1.32020 * 120.70088 * 359.97438 * 15 14 13 18 18 C 1.31944 * 121.69021 * 359.76487 * 17 15 14 19 19 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 20 20 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 21 21 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 22 22 H 1.00893 * 111.00654 * 56.04333 * 10 9 7 23 23 H 1.08993 * 109.46933 * 299.99334 * 11 10 9 24 24 H 1.09003 * 109.46864 * 60.00013 * 11 10 9 25 25 H 1.08005 * 120.76913 * 359.95765 * 13 12 11 26 26 H 1.07999 * 120.43535 * 179.97438 * 14 13 12 27 27 H 1.08004 * 119.59954 * 180.24810 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2056 -3.6157 -0.0015 11 6 1.5052 -4.9070 -0.0020 12 6 2.5147 -6.0260 -0.0023 13 6 2.9849 -6.5475 1.1943 14 6 3.9117 -7.5757 1.1472 15 6 4.3352 -8.0462 -0.0854 16 9 5.2385 -9.0491 -0.1433 17 7 3.8645 -7.5256 -1.2036 18 6 2.9773 -6.5491 -1.1938 19 1 -0.4849 0.8401 0.0004 20 1 0.6240 -2.5575 0.8880 21 1 0.6246 -2.5563 -0.8919 22 1 2.8399 -3.5490 0.7803 23 1 0.8801 -4.9816 0.8877 24 1 0.8807 -4.9813 -0.8923 25 1 2.6364 -6.1605 2.1405 26 1 4.2993 -8.0050 2.0593 27 1 2.6119 -6.1509 -2.1289 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388275984.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:35 Heat of formation + Delta-G solvation = -12.511501 kcal Electronic energy + Delta-G solvation = -12763.040187 eV Core-core repulsion = 10242.202801 eV Total energy + Delta-G solvation = -2520.837386 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -48.99510 -40.07692 -35.68007 -33.05441 -32.28584 -30.90051 -27.13212 -24.62127 -23.93201 -21.93535 -21.31592 -18.06862 -17.26596 -16.66440 -16.04373 -15.38407 -14.66103 -14.52866 -14.34090 -13.77977 -13.41831 -13.21299 -12.79420 -12.75084 -11.96118 -11.43285 -11.21750 -10.78850 -10.73396 -10.12331 -9.93587 -9.66833 -9.28451 -8.82393 -8.53884 -7.45633 -6.09652 -4.12074 0.92321 1.11670 3.29047 3.35036 3.38546 3.57638 3.61582 4.38378 4.48674 4.79968 4.85290 4.92242 5.26577 5.33628 5.41887 5.72483 5.80710 5.88579 6.06105 6.28379 6.62997 7.10855 7.29857 7.64961 7.69591 8.02866 8.24148 8.47582 8.96662 9.53342 11.01334 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.066333 B = 0.005348 C = 0.005227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.009170 B = 5234.617453 C = 5355.380431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.063 0.937 9 C 0.193 3.807 10 N -0.684 5.684 11 C 0.098 3.902 12 C -0.127 4.127 13 C -0.047 4.047 14 C -0.194 4.194 15 C 0.292 3.708 16 F -0.119 7.119 17 N -0.515 5.515 18 C 0.153 3.847 19 H 0.262 0.738 20 H -0.011 1.011 21 H 0.031 0.969 22 H 0.330 0.670 23 H 0.034 0.966 24 H 0.080 0.920 25 H 0.143 0.857 26 H 0.144 0.856 27 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.380 -13.023 2.660 13.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.728 3.272 4 H -0.205 1.205 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.555 4.555 8 H 0.081 0.919 9 C 0.067 3.933 10 N -0.315 5.315 11 C -0.032 4.032 12 C -0.129 4.129 13 C -0.073 4.073 14 C -0.215 4.215 15 C 0.138 3.862 16 F -0.099 7.099 17 N -0.229 5.229 18 C -0.004 4.004 19 H 0.072 0.928 20 H 0.006 0.994 21 H 0.049 0.951 22 H 0.147 0.853 23 H 0.053 0.947 24 H 0.099 0.901 25 H 0.161 0.839 26 H 0.162 0.838 27 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 4.631 -13.250 1.185 14.086 hybrid contribution -0.007 1.014 1.673 1.957 sum 4.623 -12.235 2.858 13.389 Atomic orbital electron populations 1.69960 1.06085 1.26916 1.50709 1.24985 0.94895 0.99419 0.95213 0.86464 0.79663 0.82874 0.78213 1.20538 1.21264 1.19838 1.21161 0.93560 0.90133 1.50655 0.91910 1.19603 0.90525 0.87128 0.96042 1.60777 1.21161 1.00445 1.49097 1.20819 0.92809 0.88151 1.01433 1.21128 0.99798 0.98387 0.93603 1.21467 0.93542 0.93201 0.99072 1.21762 1.01565 1.00593 0.97573 1.18168 0.89897 0.87807 0.90296 1.91595 1.64059 1.57148 1.97052 1.67040 1.12749 1.12663 1.30485 1.22490 0.89991 0.89200 0.98684 0.92825 0.99360 0.95120 0.85340 0.94748 0.90136 0.83884 0.83803 0.81326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.22 13.29 55.43 0.74 -25.49 15 2 C 0.06 1.58 5.46 -17.82 -0.10 1.48 15 3 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 15 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 15 6 H -0.27 -6.36 7.11 56.52 0.40 -5.96 15 7 C -0.52 -14.26 9.32 -34.44 -0.32 -14.58 15 8 H 0.06 1.71 7.81 -52.49 -0.41 1.30 15 9 C 0.19 4.83 5.44 -4.98 -0.03 4.80 15 10 N -0.68 -13.70 6.48 -116.34 -0.75 -14.45 15 11 C 0.10 1.55 5.84 -4.97 -0.03 1.52 15 12 C -0.13 -1.74 5.41 -104.48 -0.57 -2.31 15 13 C -0.05 -0.55 9.86 -39.30 -0.39 -0.94 15 14 C -0.19 -2.23 10.09 -39.36 -0.40 -2.63 15 15 C 0.29 4.05 8.41 -17.35 -0.15 3.91 15 16 F -0.12 -1.63 17.29 2.25 0.04 -1.60 15 17 N -0.52 -7.82 10.37 -13.59 -0.14 -7.96 15 18 C 0.15 2.16 10.85 -17.55 -0.19 1.97 15 19 H 0.26 7.23 8.31 -40.82 -0.34 6.89 15 20 H -0.01 -0.30 8.14 -51.93 -0.42 -0.72 15 21 H 0.03 0.82 8.14 -51.93 -0.42 0.40 15 22 H 0.33 6.36 8.71 -39.30 -0.34 6.02 15 23 H 0.03 0.53 8.10 -51.93 -0.42 0.10 15 24 H 0.08 1.25 8.09 -51.93 -0.42 0.83 15 25 H 0.14 1.40 8.06 -52.48 -0.42 0.98 15 26 H 0.14 1.25 8.06 -52.49 -0.42 0.82 15 27 H 0.17 2.13 8.06 -52.48 -0.42 1.71 15 LS Contribution 250.43 15.07 3.77 3.77 Total: -1.00 -29.93 250.43 -6.37 -36.30 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: -2.84 Total: -0.11 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: -2.16 Total: -6.78 kcal Atomic # 7 Polarization: -47.74 SS G_CDS: -0.16 Total: -47.90 kcal Atomic # 9 Polarization: -1.63 SS G_CDS: 0.04 Total: -1.60 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -29.93 -6.37 -36.30 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388275984.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.786 kcal (2) G-P(sol) polarization free energy of solvation -29.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds