Wall clock time and date at job start Sun Mar 29 2020 21:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48499 * 109.47293 * 269.99846 * 3 2 1 5 5 H 1.48504 * 109.47104 * 30.00092 * 3 2 1 6 6 H 1.48495 * 109.47249 * 149.99839 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 N 1.46893 * 109.47176 * 180.02562 * 9 7 2 11 11 C 1.46903 * 110.99924 * 179.97438 * 10 9 7 12 12 C 1.50701 * 109.47245 * 179.97438 * 11 10 9 13 13 C 1.38747 * 120.39033 * 89.99622 * 12 11 10 14 14 C 1.38503 * 118.45641 * 179.97438 * 13 12 11 15 15 C 1.38567 * 119.13262 * 359.97438 * 14 13 12 16 16 F 1.35098 * 119.64371 * 180.02562 * 15 14 13 17 17 N 1.32020 * 120.70088 * 359.97438 * 15 14 13 18 18 C 1.31944 * 121.69021 * 359.76487 * 17 15 14 19 19 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 20 20 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 21 21 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 22 22 H 1.00893 * 111.00654 * 56.04333 * 10 9 7 23 23 H 1.08993 * 109.46933 * 299.99334 * 11 10 9 24 24 H 1.09003 * 109.46864 * 60.00013 * 11 10 9 25 25 H 1.08005 * 120.76913 * 359.95765 * 13 12 11 26 26 H 1.07999 * 120.43535 * 179.97438 * 14 13 12 27 27 H 1.08004 * 119.59954 * 180.24810 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2056 -3.6157 -0.0015 11 6 1.5052 -4.9070 -0.0020 12 6 2.5147 -6.0260 -0.0023 13 6 2.9849 -6.5475 1.1943 14 6 3.9117 -7.5757 1.1472 15 6 4.3352 -8.0462 -0.0854 16 9 5.2385 -9.0491 -0.1433 17 7 3.8645 -7.5256 -1.2036 18 6 2.9773 -6.5491 -1.1938 19 1 -0.4849 0.8401 0.0004 20 1 0.6240 -2.5575 0.8880 21 1 0.6246 -2.5563 -0.8919 22 1 2.8399 -3.5490 0.7803 23 1 0.8801 -4.9816 0.8877 24 1 0.8807 -4.9813 -0.8923 25 1 2.6364 -6.1605 2.1405 26 1 4.2993 -8.0050 2.0593 27 1 2.6119 -6.1509 -2.1289 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388275984.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:35 Heat of formation + Delta-G solvation = -33.226154 kcal Electronic energy + Delta-G solvation = -12763.938442 eV Core-core repulsion = 10242.202801 eV Total energy + Delta-G solvation = -2521.735641 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -50.04101 -41.13300 -37.25529 -34.83949 -33.54344 -32.23960 -28.88679 -26.14863 -24.94226 -23.62526 -22.71038 -19.09655 -18.65225 -18.31775 -17.10714 -16.93315 -16.39145 -15.80535 -15.46215 -15.24373 -14.66838 -14.54887 -14.09139 -13.99658 -13.58993 -13.26025 -12.80292 -12.62735 -12.40962 -11.98691 -11.34853 -10.99882 -10.72418 -10.63402 -9.91827 -9.12021 -8.21798 -6.32219 -0.12295 0.12588 1.43062 1.44225 1.55108 2.40329 2.53669 2.58593 3.12241 3.47998 3.67022 3.80511 3.93428 3.98929 4.32017 4.64685 4.74198 4.81278 4.88828 5.09668 5.21555 5.29952 5.60241 5.63267 6.02521 6.41914 6.60778 6.70238 6.89094 7.38707 8.89369 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.066333 B = 0.005348 C = 0.005227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.009170 B = 5234.617453 C = 5355.380431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.969 3.031 4 H -0.275 1.275 5 H -0.282 1.282 6 H -0.264 1.264 7 C -0.536 4.536 8 H 0.063 0.937 9 C 0.207 3.793 10 N -0.685 5.685 11 C 0.103 3.897 12 C -0.133 4.133 13 C -0.039 4.039 14 C -0.178 4.178 15 C 0.277 3.723 16 F -0.122 7.122 17 N -0.542 5.542 18 C 0.145 3.855 19 H 0.265 0.735 20 H -0.031 1.031 21 H 0.005 0.995 22 H 0.336 0.664 23 H 0.045 0.955 24 H 0.079 0.921 25 H 0.169 0.831 26 H 0.179 0.821 27 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.373 -13.147 3.680 14.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.195 4.195 3 Si 0.794 3.206 4 H -0.201 1.201 5 H -0.207 1.207 6 H -0.188 1.188 7 C -0.574 4.574 8 H 0.081 0.919 9 C 0.080 3.920 10 N -0.316 5.316 11 C -0.027 4.027 12 C -0.136 4.136 13 C -0.065 4.065 14 C -0.199 4.199 15 C 0.124 3.876 16 F -0.101 7.101 17 N -0.256 5.256 18 C -0.012 4.012 19 H 0.074 0.926 20 H -0.013 1.013 21 H 0.023 0.977 22 H 0.153 0.847 23 H 0.063 0.937 24 H 0.097 0.903 25 H 0.187 0.813 26 H 0.196 0.804 27 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 5.637 -13.400 2.205 14.704 hybrid contribution -0.310 0.954 1.363 1.692 sum 5.327 -12.446 3.568 14.000 Atomic orbital electron populations 1.70076 1.07660 1.27977 1.51540 1.25888 0.95754 1.03190 0.94681 0.85383 0.78569 0.78285 0.78365 1.20075 1.20734 1.18826 1.21546 0.93799 0.91529 1.50536 0.91898 1.19238 0.90569 0.88397 0.93819 1.60598 1.20516 1.00941 1.49550 1.20771 0.93296 0.86720 1.01878 1.20914 0.99980 0.98181 0.94501 1.21768 0.92772 0.92655 0.99317 1.22053 1.00382 0.99608 0.97850 1.18505 0.90131 0.88008 0.90985 1.91588 1.64160 1.57253 1.97100 1.66986 1.13541 1.13396 1.31723 1.22582 0.90064 0.89268 0.99246 0.92616 1.01349 0.97658 0.84665 0.93705 0.90297 0.81310 0.80394 0.80885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.87 13.29 21.45 0.28 -54.59 15 2 C 0.00 0.18 5.46 84.65 0.46 0.65 15 3 Si 0.97 43.38 29.54 68.60 2.03 45.40 15 4 H -0.28 -12.06 7.11 99.48 0.71 -11.35 15 5 H -0.28 -12.30 7.11 99.48 0.71 -11.59 15 6 H -0.26 -11.31 7.11 99.48 0.71 -10.60 15 7 C -0.54 -29.60 9.32 25.60 0.24 -29.36 15 8 H 0.06 3.39 7.81 -2.91 -0.02 3.37 15 9 C 0.21 10.49 5.44 85.56 0.47 10.95 15 10 N -0.69 -27.10 6.48 -521.98 -3.38 -30.48 15 11 C 0.10 3.15 5.84 85.56 0.50 3.65 15 12 C -0.13 -3.46 5.41 -19.77 -0.11 -3.57 15 13 C -0.04 -0.82 9.86 22.45 0.22 -0.59 15 14 C -0.18 -3.55 10.09 22.41 0.23 -3.32 15 15 C 0.28 7.21 8.41 84.74 0.71 7.92 15 16 F -0.12 -3.16 17.29 44.97 0.78 -2.38 15 17 N -0.54 -15.98 10.37 -196.92 -2.04 -18.02 15 18 C 0.14 3.97 10.85 84.64 0.92 4.89 15 19 H 0.27 14.67 8.31 -92.71 -0.77 13.90 15 20 H -0.03 -1.67 8.14 -2.39 -0.02 -1.69 15 21 H 0.01 0.29 8.14 -2.39 -0.02 0.27 15 22 H 0.34 12.57 8.71 -89.70 -0.78 11.79 15 23 H 0.04 1.30 8.10 -2.39 -0.02 1.28 15 24 H 0.08 2.43 8.09 -2.39 -0.02 2.41 15 25 H 0.17 2.65 8.06 -2.91 -0.02 2.63 15 26 H 0.18 2.30 8.06 -2.91 -0.02 2.28 15 27 H 0.17 4.37 8.06 -2.91 -0.02 4.35 15 Total: -1.00 -63.50 250.43 1.70 -61.80 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: 0.40 Total: 7.04 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: 3.64 Total: -8.78 kcal Atomic # 7 Polarization: -97.95 SS G_CDS: -5.14 Total: -103.09 kcal Atomic # 9 Polarization: -3.16 SS G_CDS: 0.78 Total: -2.38 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Total: -63.50 1.70 -61.80 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388275984.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.573 kcal (2) G-P(sol) polarization free energy of solvation -63.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds